Wall clock time and date at job start Tue Mar 31 2020 19:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.46956 * 2 1 4 4 C 1.53001 * 109.47393 * 120.00369 * 2 1 3 5 5 C 1.52996 * 109.47063 * 65.31233 * 4 2 1 6 6 H 1.09004 * 110.00118 * 48.70369 * 5 4 2 7 7 C 1.54336 * 109.99509 * 287.66673 * 5 4 2 8 8 C 1.55148 * 103.02253 * 218.66690 * 7 5 4 9 9 C 1.54908 * 101.58478 * 35.30457 * 8 7 5 10 10 N 1.47021 * 109.88571 * 169.79718 * 5 4 2 11 11 C 1.34779 * 125.64625 * 298.40050 * 10 5 4 12 12 O 1.21346 * 120.00008 * 4.11698 * 11 10 5 13 13 C 1.49456 * 119.99877 * 184.11819 * 11 10 5 14 14 O 1.21345 * 119.99737 * 352.55451 * 13 11 10 15 15 N 1.34769 * 119.99674 * 172.55437 * 13 11 10 16 16 C 1.46921 * 120.63415 * 353.26507 * 15 13 11 17 17 C 1.53191 * 108.77907 * 233.58696 * 16 15 13 18 18 C 1.53044 * 109.31531 * 305.36709 * 17 16 15 19 19 C 1.50701 * 109.46152 * 181.38181 * 18 17 16 20 20 H 1.08003 * 119.99922 * 357.90240 * 19 18 17 21 21 C 1.37876 * 119.99665 * 177.89848 * 19 18 17 22 22 N 1.31511 * 120.00156 * 2.34332 * 21 19 18 23 23 Si 1.86803 * 119.99736 * 182.34766 * 21 19 18 24 24 H 1.48494 * 109.47224 * 265.00240 * 23 21 19 25 25 H 1.48496 * 109.47183 * 145.00180 * 23 21 19 26 26 H 1.48503 * 109.47234 * 25.00275 * 23 21 19 27 27 C 1.53042 * 109.52478 * 61.36602 * 18 17 16 28 28 C 1.46932 * 120.62827 * 173.24698 * 15 13 11 29 29 H 1.09001 * 109.46960 * 173.88170 * 1 2 3 30 30 H 1.08996 * 109.47308 * 293.88335 * 1 2 3 31 31 H 1.08996 * 109.47102 * 53.88653 * 1 2 3 32 32 H 1.09005 * 109.47170 * 240.00350 * 2 1 3 33 33 H 1.09005 * 109.47118 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.47251 * 300.00119 * 3 2 1 35 35 H 1.09005 * 109.46896 * 60.00182 * 3 2 1 36 36 H 1.08996 * 109.46912 * 305.31722 * 4 2 1 37 37 H 1.08996 * 109.47235 * 185.31106 * 4 2 1 38 38 H 1.08995 * 110.85308 * 100.19141 * 7 5 4 39 39 H 1.09006 * 110.66518 * 337.05022 * 7 5 4 40 40 H 1.09002 * 111.00424 * 277.23008 * 8 7 5 41 41 H 1.08998 * 111.00817 * 153.37770 * 8 7 5 42 42 H 1.08998 * 110.37333 * 204.15447 * 9 8 7 43 43 H 1.08997 * 110.36894 * 81.83051 * 9 8 7 44 44 H 1.09006 * 109.58434 * 113.80036 * 16 15 13 45 45 H 1.09000 * 109.59179 * 353.37716 * 16 15 13 46 46 H 1.09001 * 109.50100 * 185.41463 * 17 16 15 47 47 H 1.09005 * 109.49445 * 65.31800 * 17 16 15 48 48 H 1.09002 * 109.45905 * 301.35674 * 18 17 16 49 49 H 0.97003 * 119.99652 * 180.02562 * 22 21 19 50 50 H 1.09000 * 109.49631 * 58.58365 * 27 18 17 51 51 H 1.09001 * 109.49500 * 178.67587 * 27 18 17 52 52 H 1.08999 * 109.58551 * 246.19802 * 28 15 13 53 53 H 1.09004 * 109.58813 * 6.62630 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6421 -2.1972 1.1841 6 1 1.9031 -2.6111 0.2101 7 6 0.1249 -2.3457 1.4250 8 6 0.0321 -3.6324 2.2870 9 6 1.3143 -3.5223 3.1492 10 7 2.3280 -2.9474 2.2462 11 6 3.6627 -3.0822 2.3762 12 8 4.4083 -2.4976 1.6180 13 6 4.2245 -3.9517 3.4542 14 8 3.4896 -4.4277 4.2944 15 7 5.5472 -4.2071 3.4932 16 6 6.4279 -3.7622 2.4046 17 6 7.2213 -4.9668 1.8886 18 6 7.9531 -5.6294 3.0581 19 6 8.7619 -6.7946 2.5489 20 1 8.7281 -7.0590 1.5022 21 6 9.5449 -7.5230 3.4191 22 7 9.5504 -7.2300 4.7012 23 14 10.5980 -8.9259 2.7770 24 1 9.8615 -10.2066 2.9272 25 1 11.8637 -8.9891 3.5510 26 1 10.9059 -8.6973 1.3424 27 6 6.9324 -6.1268 4.0843 28 6 6.1360 -4.9354 4.6253 29 1 -0.3633 -1.0218 -0.1095 30 1 -0.3634 0.4161 0.9396 31 1 -0.3633 0.6057 -0.8302 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9563 -0.8899 35 1 1.6766 1.9563 0.8900 36 1 1.6011 -0.2655 2.1366 37 1 3.1259 -0.6397 1.2980 38 1 -0.4070 -2.4738 0.4823 39 1 -0.2638 -1.4865 1.9716 40 1 0.0575 -4.5246 1.6612 41 1 -0.8610 -3.6206 2.9118 42 1 1.6272 -4.5087 3.4916 43 1 1.1445 -2.8612 3.9989 44 1 7.1163 -3.0041 2.7782 45 1 5.8274 -3.3465 1.5954 46 1 7.9474 -4.6336 1.1470 47 1 6.5385 -5.6841 1.4333 48 1 8.6172 -4.9044 3.5286 49 1 10.1016 -7.7423 5.3133 50 1 6.2524 -6.8332 3.6081 51 1 7.4529 -6.6195 4.9056 52 1 6.8006 -4.2730 5.1800 53 1 5.3428 -5.2938 5.2815 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325119471.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:39 Heat of formation + Delta-G solvation = -79.523387 kcal Electronic energy + Delta-G solvation = -30762.264240 eV Core-core repulsion = 26826.309641 eV Total energy + Delta-G solvation = -3935.954600 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.19102 -40.54030 -38.94217 -38.57487 -36.78172 -35.36899 -33.01685 -32.68683 -31.92506 -31.05059 -28.50475 -28.11234 -26.69473 -26.26180 -24.45639 -24.12205 -22.85750 -21.89997 -21.03160 -20.88287 -20.01238 -18.54092 -18.27251 -18.07005 -17.51130 -16.85031 -16.52990 -16.35819 -15.94308 -15.57225 -15.26772 -14.96727 -14.88827 -14.79537 -14.56401 -14.48207 -14.43594 -14.05335 -13.91157 -13.58504 -13.45361 -13.30578 -13.09549 -12.92795 -12.84394 -12.83802 -12.55434 -12.44098 -12.26129 -12.10330 -11.98347 -11.76346 -11.67627 -11.51659 -11.47130 -11.35695 -11.26636 -11.09729 -10.89141 -10.45810 -10.09294 -9.85809 -9.64447 -8.09634 -6.23489 0.30243 1.19505 1.40074 1.41686 1.51785 2.05484 2.35098 2.42904 3.07155 3.16810 3.60150 3.67422 3.75957 4.04817 4.06619 4.11478 4.20076 4.27989 4.31952 4.36214 4.41445 4.43614 4.56120 4.56817 4.67162 4.71508 4.78413 4.82618 4.86815 4.90263 4.93086 4.95347 4.97215 5.05919 5.11609 5.12492 5.14696 5.16705 5.21501 5.31947 5.33936 5.39561 5.41072 5.44189 5.51147 5.57591 5.61615 5.93835 6.05642 6.06323 6.25119 6.36113 6.58450 6.86430 6.89246 7.44447 8.94294 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.020949 B = 0.002555 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.288799 B =10954.268729 C =11568.998257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.089 4.089 3 C -0.146 4.146 4 C -0.122 4.122 5 C 0.129 3.871 6 H 0.074 0.926 7 C -0.119 4.119 8 C -0.129 4.129 9 C 0.088 3.912 10 N -0.583 5.583 11 C 0.522 3.478 12 O -0.526 6.526 13 C 0.498 3.502 14 O -0.546 6.546 15 N -0.571 5.571 16 C 0.076 3.924 17 C -0.114 4.114 18 C 0.044 3.956 19 C -0.533 4.533 20 H 0.050 0.950 21 C 0.014 3.986 22 N -0.915 5.915 23 Si 0.952 3.048 24 H -0.278 1.278 25 H -0.282 1.282 26 H -0.269 1.269 27 C -0.109 4.109 28 C 0.117 3.883 29 H 0.080 0.920 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.041 0.959 34 H 0.064 0.936 35 H 0.056 0.944 36 H 0.067 0.933 37 H 0.049 0.951 38 H 0.112 0.888 39 H 0.096 0.904 40 H 0.077 0.923 41 H 0.111 0.889 42 H 0.080 0.920 43 H 0.076 0.924 44 H 0.066 0.934 45 H 0.140 0.860 46 H 0.068 0.932 47 H 0.043 0.957 48 H 0.004 0.996 49 H 0.261 0.739 50 H 0.025 0.975 51 H 0.078 0.922 52 H 0.069 0.931 53 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.986 14.123 -7.172 27.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.108 4.108 3 C -0.204 4.204 4 C -0.160 4.160 5 C 0.028 3.972 6 H 0.092 0.908 7 C -0.156 4.156 8 C -0.167 4.167 9 C -0.033 4.033 10 N -0.315 5.315 11 C 0.305 3.695 12 O -0.405 6.405 13 C 0.281 3.719 14 O -0.425 6.425 15 N -0.302 5.302 16 C -0.045 4.045 17 C -0.152 4.152 18 C 0.025 3.975 19 C -0.571 4.571 20 H 0.069 0.931 21 C -0.185 4.185 22 N -0.554 5.554 23 Si 0.778 3.222 24 H -0.204 1.204 25 H -0.208 1.208 26 H -0.194 1.194 27 C -0.148 4.148 28 C -0.005 4.005 29 H 0.099 0.901 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.060 0.940 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.068 0.932 38 H 0.130 0.870 39 H 0.114 0.886 40 H 0.095 0.905 41 H 0.129 0.871 42 H 0.098 0.902 43 H 0.095 0.905 44 H 0.084 0.916 45 H 0.156 0.844 46 H 0.087 0.913 47 H 0.061 0.939 48 H 0.022 0.978 49 H 0.071 0.929 50 H 0.044 0.956 51 H 0.096 0.904 52 H 0.087 0.913 53 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -22.807 14.117 -6.950 27.708 hybrid contribution 1.498 -1.036 0.185 1.831 sum -21.309 13.081 -6.765 25.902 Atomic orbital electron populations 1.22288 0.93545 1.03600 1.02150 1.21013 0.97276 0.95845 0.96704 1.21822 1.00394 0.95979 1.02185 1.21985 1.01057 0.93696 0.99246 1.22024 0.93726 0.91607 0.89877 0.90774 1.23115 0.91679 0.98655 1.02137 1.22909 0.96630 0.98682 0.98514 1.22807 0.87687 0.99916 0.92924 1.48532 1.03772 1.50040 1.29171 1.19685 0.82536 0.82524 0.84734 1.90444 1.56728 1.47703 1.45626 1.20269 0.82903 0.82371 0.86342 1.90643 1.57816 1.52616 1.41439 1.48180 1.06356 1.53067 1.22646 1.22931 0.94178 0.96539 0.90835 1.21881 0.98215 0.96266 0.98835 1.18647 0.92416 0.94299 0.92123 1.21546 1.26337 1.14662 0.94576 0.93131 1.25714 0.97946 0.99707 0.95128 1.69973 1.40705 1.41697 1.03062 0.85630 0.78397 0.79616 0.78532 1.20434 1.20773 1.19384 1.21767 0.96404 0.95395 1.01230 1.21800 0.96956 0.94199 0.87555 0.90126 0.92157 0.92452 0.91655 0.93979 0.91683 0.92529 0.91407 0.93191 0.86984 0.88561 0.90469 0.87106 0.90183 0.90534 0.91553 0.84353 0.91307 0.93859 0.97792 0.92933 0.95589 0.90393 0.91259 0.89935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 7.81 71.98 0.56 -0.86 16 2 C -0.09 -1.25 2.90 -10.79 -0.03 -1.28 16 3 C -0.15 -2.07 9.19 71.98 0.66 -1.40 16 4 C -0.12 -2.22 4.43 30.59 0.14 -2.08 16 5 C 0.13 2.32 2.85 45.34 0.13 2.45 16 6 H 0.07 1.43 8.09 -2.38 -0.02 1.42 16 7 C -0.12 -1.19 4.47 31.78 0.14 -1.05 16 8 C -0.13 -1.52 7.09 31.98 0.23 -1.30 16 9 C 0.09 1.80 6.11 86.85 0.53 2.33 16 10 N -0.58 -14.26 3.06 -789.59 -2.42 -16.68 16 11 C 0.52 16.52 7.57 87.27 0.66 17.18 16 12 O -0.53 -17.84 11.94 -3.23 -0.04 -17.88 16 13 C 0.50 18.03 7.70 87.27 0.67 18.70 16 14 O -0.55 -20.55 13.22 -3.23 -0.04 -20.60 16 15 N -0.57 -22.03 2.97 -820.48 -2.44 -24.47 16 16 C 0.08 2.86 6.02 86.36 0.52 3.38 16 17 C -0.11 -4.84 5.30 30.67 0.16 -4.68 16 18 C 0.04 2.20 2.05 -11.51 -0.02 2.18 16 19 C -0.53 -29.57 8.53 25.60 0.22 -29.35 16 20 H 0.05 2.78 7.74 -2.91 -0.02 2.75 16 21 C 0.01 0.76 5.33 84.65 0.45 1.22 16 22 N -0.91 -52.46 11.37 21.45 0.24 -52.22 16 23 Si 0.95 43.85 29.54 68.60 2.03 45.88 16 24 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 25 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 26 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 27 C -0.11 -5.28 5.17 30.67 0.16 -5.13 16 28 C 0.12 4.79 6.44 86.36 0.56 5.34 16 29 H 0.08 0.54 4.53 -2.39 -0.01 0.53 16 30 H 0.06 0.50 7.76 -2.39 -0.02 0.48 16 31 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.06 0.99 8.11 -2.38 -0.02 0.97 16 33 H 0.04 0.70 8.14 -2.38 -0.02 0.68 16 34 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 36 H 0.07 1.17 7.89 -2.39 -0.02 1.15 16 37 H 0.05 1.25 6.47 -2.39 -0.02 1.23 16 38 H 0.11 0.67 6.37 -2.39 -0.02 0.65 16 39 H 0.10 0.76 6.64 -2.38 -0.02 0.74 16 40 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.08 2.04 6.11 -2.39 -0.01 2.02 16 43 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.07 2.43 8.14 -2.38 -0.02 2.41 16 45 H 0.14 5.02 4.22 -55.23 -0.23 4.78 16 46 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 47 H 0.04 1.87 8.14 -2.38 -0.02 1.85 16 48 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 49 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 50 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 51 H 0.08 4.18 6.11 -2.39 -0.01 4.17 16 52 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 53 H 0.08 3.30 7.00 -2.39 -0.02 3.28 16 Total: -1.00 -64.60 393.60 3.73 -60.87 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: 0.66 Total: 19.44 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: 5.73 Total: 5.66 kcal Atomic # 7 Polarization: -88.76 SS G_CDS: -4.61 Total: -93.37 kcal Atomic # 8 Polarization: -38.39 SS G_CDS: -0.08 Total: -38.47 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -64.60 3.73 -60.87 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325119471.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.655 kcal (2) G-P(sol) polarization free energy of solvation -64.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds