Wall clock time and date at job start Tue Mar 31 2020 19:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47281 * 2 1 4 4 C 1.53005 * 109.46840 * 119.99972 * 2 1 3 5 5 C 1.52999 * 109.46968 * 176.51793 * 4 2 1 6 6 H 1.09000 * 109.87637 * 54.07970 * 5 4 2 7 7 C 1.54331 * 109.88130 * 293.06418 * 5 4 2 8 8 C 1.55405 * 102.82749 * 218.48571 * 7 5 4 9 9 C 1.54908 * 101.66837 * 35.33712 * 8 7 5 10 10 N 1.47019 * 109.88501 * 175.09869 * 5 4 2 11 11 C 1.34783 * 125.64520 * 298.39461 * 10 5 4 12 12 O 1.21338 * 119.99953 * 354.60219 * 11 10 5 13 13 C 1.49454 * 119.99725 * 174.60528 * 11 10 5 14 14 O 1.21348 * 120.00203 * 6.42348 * 13 11 10 15 15 N 1.34769 * 119.99835 * 186.41720 * 13 11 10 16 16 C 1.46934 * 120.63038 * 7.15361 * 15 13 11 17 17 C 1.53187 * 108.77641 * 126.36743 * 16 15 13 18 18 C 1.53045 * 109.31701 * 54.63300 * 17 16 15 19 19 C 1.53046 * 109.53462 * 298.63841 * 18 17 16 20 20 H 1.08994 * 109.49613 * 301.40903 * 19 18 17 21 21 C 1.50698 * 109.49369 * 181.31171 * 19 18 17 22 22 H 1.08001 * 119.99993 * 359.97438 * 21 19 18 23 23 C 1.37873 * 120.00144 * 179.97438 * 21 19 18 24 24 N 1.31519 * 119.99839 * 0.02562 * 23 21 19 25 25 Si 1.86801 * 120.00206 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47179 * 0.02562 * 25 23 21 27 27 H 1.48501 * 109.47068 * 120.00377 * 25 23 21 28 28 H 1.48505 * 109.46889 * 240.00064 * 25 23 21 29 29 C 1.46932 * 120.63386 * 186.86895 * 15 13 11 30 30 H 1.09004 * 109.47116 * 299.99984 * 1 2 3 31 31 H 1.08995 * 109.46998 * 60.00046 * 1 2 3 32 32 H 1.08996 * 109.47240 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.46749 * 239.99240 * 2 1 3 34 34 H 1.08996 * 109.46885 * 185.24317 * 3 2 1 35 35 H 1.08999 * 109.46620 * 305.23614 * 3 2 1 36 36 H 1.08994 * 109.47277 * 65.23979 * 3 2 1 37 37 H 1.09004 * 109.47249 * 56.51628 * 4 2 1 38 38 H 1.08997 * 109.47054 * 296.51520 * 4 2 1 39 39 H 1.09006 * 110.72019 * 336.75300 * 7 5 4 40 40 H 1.08996 * 110.72333 * 100.02612 * 7 5 4 41 41 H 1.09003 * 110.88535 * 277.26371 * 8 7 5 42 42 H 1.08997 * 111.03596 * 153.47698 * 8 7 5 43 43 H 1.08997 * 110.36399 * 204.24187 * 9 8 7 44 44 H 1.08998 * 110.46045 * 81.96018 * 9 8 7 45 45 H 1.08995 * 109.58383 * 246.15380 * 16 15 13 46 46 H 1.08999 * 109.58627 * 6.57376 * 16 15 13 47 47 H 1.09000 * 109.50043 * 174.59002 * 17 16 15 48 48 H 1.09002 * 109.49807 * 294.68344 * 17 16 15 49 49 H 1.09001 * 109.45289 * 58.65365 * 18 17 16 50 50 H 1.08999 * 109.46258 * 178.61510 * 18 17 16 51 51 H 0.97000 * 119.99836 * 180.02562 * 24 23 21 52 52 H 1.08996 * 109.58345 * 353.42598 * 29 15 13 53 53 H 1.08997 * 109.58341 * 113.84742 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5674 -0.7976 1.2063 6 1 3.9846 0.2000 1.0688 7 6 4.0146 -1.7173 0.0505 8 6 5.2288 -2.4718 0.6600 9 6 4.7885 -2.6332 2.1363 10 7 4.0742 -1.3837 2.4558 11 6 3.9118 -0.8650 3.6891 12 8 3.3888 0.2212 3.8265 13 6 4.3761 -1.6278 4.8876 14 8 5.0025 -2.6575 4.7462 15 7 4.0993 -1.1719 6.1252 16 6 3.2122 -0.0163 6.3164 17 6 2.0961 -0.4072 7.2900 18 6 2.7163 -0.9439 8.5821 19 6 3.5456 -2.1922 8.2716 20 1 2.9085 -2.9467 7.8104 21 6 4.1296 -2.7384 9.5490 22 1 3.9298 -2.2448 10.4885 23 6 4.9188 -3.8685 9.5182 24 7 5.1625 -4.4694 8.3739 25 14 5.6421 -4.5461 11.1016 26 1 5.2208 -3.6942 12.2426 27 1 5.1560 -5.9331 11.3140 28 1 7.1241 -4.5500 11.0068 29 6 4.6738 -1.8249 7.3095 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 3.1260 1.4438 -0.0939 35 1 1.6021 1.9826 -0.8394 36 1 1.7554 1.9285 0.9331 37 1 1.6265 -1.7294 1.2811 38 1 1.7285 -0.1726 2.1381 39 1 3.2212 -2.4158 -0.2157 40 1 4.3182 -1.1289 -0.8153 41 1 6.1360 -1.8720 0.5861 42 1 5.3648 -3.4431 0.1844 43 1 5.6594 -2.7478 2.7816 44 1 4.1222 -3.4892 2.2438 45 1 3.7814 0.8169 6.7285 46 1 2.7778 0.2731 5.3595 47 1 1.4866 0.4680 7.5152 48 1 1.4726 -1.1786 6.8380 49 1 3.3591 -0.1806 9.0206 50 1 1.9244 -1.1998 9.2861 51 1 5.7175 -5.2646 8.3523 52 1 5.2034 -2.7285 7.0076 53 1 5.3645 -1.1421 7.8042 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328139915.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:46 Heat of formation + Delta-G solvation = -89.012445 kcal Electronic energy + Delta-G solvation = -31149.929009 eV Core-core repulsion = 27213.562932 eV Total energy + Delta-G solvation = -3936.366076 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.12033 -40.43935 -38.85954 -38.50454 -36.80640 -35.25607 -33.53454 -32.64968 -31.64022 -31.09520 -28.00474 -27.75562 -26.95656 -26.50978 -25.01283 -23.60549 -22.92465 -22.20619 -21.09000 -20.43965 -19.95561 -18.61233 -18.22752 -17.81889 -17.40634 -17.03613 -16.54715 -16.32625 -15.90031 -15.59261 -15.10290 -15.00805 -14.91376 -14.70736 -14.59154 -14.46704 -14.39530 -14.03491 -13.91851 -13.79421 -13.50145 -13.26079 -13.10719 -12.95042 -12.90350 -12.60629 -12.49180 -12.31666 -12.25832 -12.06614 -12.05293 -11.85794 -11.73856 -11.57937 -11.50390 -11.46869 -11.32892 -11.11381 -10.98928 -10.56509 -10.08885 -9.80441 -9.53103 -8.12558 -6.29617 0.35690 1.26245 1.40463 1.41552 1.53552 2.13031 2.38718 2.45447 3.12168 3.17516 3.58332 3.66783 3.79448 4.02998 4.08261 4.10471 4.13997 4.16064 4.30573 4.33377 4.42262 4.48393 4.56008 4.69621 4.75513 4.78346 4.79953 4.81116 4.86631 4.90691 4.96144 4.99248 5.01962 5.03874 5.07817 5.11358 5.14525 5.17710 5.20492 5.27702 5.29789 5.32816 5.36280 5.46295 5.49856 5.55856 5.57275 5.82676 5.92874 6.08405 6.26803 6.37400 6.67305 6.82248 6.99696 7.40281 8.91361 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.017527 B = 0.003047 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.165750 B = 9187.365074 C =10245.057193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 C -0.148 4.148 4 C -0.123 4.123 5 C 0.127 3.873 6 H 0.083 0.917 7 C -0.116 4.116 8 C -0.124 4.124 9 C 0.090 3.910 10 N -0.584 5.584 11 C 0.526 3.474 12 O -0.523 6.523 13 C 0.485 3.515 14 O -0.549 6.549 15 N -0.577 5.577 16 C 0.068 3.932 17 C -0.125 4.125 18 C -0.106 4.106 19 C 0.040 3.960 20 H -0.012 1.012 21 C -0.535 4.535 22 H 0.062 0.938 23 C 0.011 3.989 24 N -0.913 5.913 25 Si 0.960 3.040 26 H -0.262 1.262 27 H -0.282 1.282 28 H -0.281 1.281 29 C 0.123 3.877 30 H 0.042 0.958 31 H 0.068 0.932 32 H 0.055 0.945 33 H 0.092 0.908 34 H 0.057 0.943 35 H 0.067 0.933 36 H 0.039 0.961 37 H 0.061 0.939 38 H 0.048 0.952 39 H 0.091 0.909 40 H 0.111 0.889 41 H 0.081 0.919 42 H 0.108 0.892 43 H 0.074 0.926 44 H 0.066 0.934 45 H 0.071 0.929 46 H 0.139 0.861 47 H 0.100 0.900 48 H 0.046 0.954 49 H 0.057 0.943 50 H 0.054 0.946 51 H 0.261 0.739 52 H 0.086 0.914 53 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.151 9.346 -21.238 23.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.104 4.104 3 C -0.205 4.205 4 C -0.161 4.161 5 C 0.025 3.975 6 H 0.100 0.900 7 C -0.154 4.154 8 C -0.162 4.162 9 C -0.032 4.032 10 N -0.316 5.316 11 C 0.310 3.690 12 O -0.403 6.403 13 C 0.268 3.732 14 O -0.428 6.428 15 N -0.309 5.309 16 C -0.053 4.053 17 C -0.163 4.163 18 C -0.144 4.144 19 C 0.021 3.979 20 H 0.006 0.994 21 C -0.573 4.573 22 H 0.081 0.919 23 C -0.189 4.189 24 N -0.552 5.552 25 Si 0.785 3.215 26 H -0.186 1.186 27 H -0.208 1.208 28 H -0.207 1.207 29 C 0.001 3.999 30 H 0.061 0.939 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.110 0.890 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.058 0.942 37 H 0.080 0.920 38 H 0.067 0.933 39 H 0.110 0.890 40 H 0.129 0.871 41 H 0.100 0.900 42 H 0.127 0.873 43 H 0.092 0.908 44 H 0.084 0.916 45 H 0.090 0.910 46 H 0.156 0.844 47 H 0.118 0.882 48 H 0.065 0.935 49 H 0.076 0.924 50 H 0.073 0.927 51 H 0.070 0.930 52 H 0.104 0.896 53 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -5.009 9.268 -21.225 23.695 hybrid contribution 0.553 -0.854 1.553 1.856 sum -4.455 8.414 -19.672 21.855 Atomic orbital electron populations 1.21835 0.94918 1.01839 1.01864 1.21041 0.95937 0.96238 0.97138 1.21886 1.01208 0.95873 1.01580 1.21996 0.93925 1.00877 0.99312 1.22096 0.94605 0.98413 0.82340 0.89953 1.22836 0.98128 0.98216 0.96201 1.22885 0.98560 1.02961 0.91773 1.22719 0.96869 0.85213 0.98414 1.48537 1.52660 1.25329 1.05076 1.19672 0.79995 0.85599 0.83732 1.90391 1.44634 1.21015 1.84235 1.20480 0.81905 0.85587 0.85277 1.90703 1.41998 1.24176 1.85894 1.48451 1.45768 1.31464 1.05178 1.22970 0.91482 0.86464 1.04369 1.21916 0.97356 1.01415 0.95582 1.21549 0.98753 0.97320 0.96729 1.18813 0.92572 0.92879 0.93667 0.99416 1.21497 1.31146 1.10943 0.93756 0.91939 1.25891 0.96668 0.96971 0.99332 1.70073 1.38494 1.20155 1.26457 0.85477 0.77960 0.78132 0.79920 1.18645 1.20779 1.20670 1.21850 0.97440 0.96815 0.83783 0.93852 0.91302 0.92632 0.88979 0.92352 0.91426 0.94156 0.92040 0.93335 0.89047 0.87057 0.90047 0.87343 0.90775 0.91598 0.91031 0.84393 0.88190 0.93523 0.92399 0.92688 0.92967 0.89566 0.93850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.19 71.98 0.66 -1.39 16 2 C -0.08 -1.20 2.83 -10.79 -0.03 -1.23 16 3 C -0.15 -2.14 8.79 71.98 0.63 -1.51 16 4 C -0.12 -2.47 4.17 30.60 0.13 -2.34 16 5 C 0.13 2.57 2.71 45.34 0.12 2.69 16 6 H 0.08 1.69 6.39 -2.39 -0.02 1.68 16 7 C -0.12 -1.48 5.56 31.87 0.18 -1.30 16 8 C -0.12 -1.92 7.09 32.07 0.23 -1.69 16 9 C 0.09 2.35 5.98 86.85 0.52 2.87 16 10 N -0.58 -16.66 3.07 -789.61 -2.42 -19.08 16 11 C 0.53 18.76 7.50 87.27 0.65 19.41 16 12 O -0.52 -18.56 12.32 -3.21 -0.04 -18.60 16 13 C 0.48 21.08 7.71 87.27 0.67 21.75 16 14 O -0.55 -26.76 13.29 -3.24 -0.04 -26.80 16 15 N -0.58 -25.49 2.98 -821.32 -2.45 -27.94 16 16 C 0.07 2.47 6.03 86.36 0.52 2.99 16 17 C -0.12 -4.36 6.08 30.67 0.19 -4.18 16 18 C -0.11 -4.39 5.11 30.62 0.16 -4.23 16 19 C 0.04 2.08 2.24 -11.61 -0.03 2.05 16 20 H -0.01 -0.74 8.14 -2.39 -0.02 -0.75 16 21 C -0.54 -29.82 8.56 25.60 0.22 -29.60 16 22 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 23 C 0.01 0.62 5.31 84.65 0.45 1.06 16 24 N -0.91 -54.99 11.39 21.45 0.24 -54.74 16 25 Si 0.96 44.27 29.54 68.60 2.03 46.30 16 26 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 27 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 28 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 29 C 0.12 6.30 5.39 86.22 0.46 6.77 16 30 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.09 0.95 7.37 -2.39 -0.02 0.93 16 34 H 0.06 0.80 6.66 -2.39 -0.02 0.78 16 35 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.06 1.26 8.03 -2.39 -0.02 1.24 16 38 H 0.05 1.27 6.90 -2.39 -0.02 1.25 16 39 H 0.09 1.00 7.77 -2.38 -0.02 0.98 16 40 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.07 2.38 6.33 -2.39 -0.02 2.36 16 44 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 45 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 46 H 0.14 4.87 4.21 -56.33 -0.24 4.63 16 47 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 48 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 49 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 50 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 51 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 52 H 0.09 5.14 5.11 -2.39 -0.01 5.12 16 53 H 0.04 2.21 8.14 -2.39 -0.02 2.19 16 Total: -1.00 -69.48 399.24 3.71 -65.77 By element: Atomic # 1 Polarization: 22.32 SS G_CDS: 0.65 Total: 22.97 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: 5.74 Total: 12.12 kcal Atomic # 7 Polarization: -97.13 SS G_CDS: -4.62 Total: -101.76 kcal Atomic # 8 Polarization: -45.32 SS G_CDS: -0.08 Total: -45.41 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -69.48 3.71 -65.77 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328139915.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.241 kcal (2) G-P(sol) polarization free energy of solvation -69.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds