Wall clock time and date at job start Tue Mar 31 2020 19:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47178 * 2 1 4 4 C 1.53002 * 109.46997 * 239.99940 * 2 1 3 5 5 C 1.52997 * 109.47023 * 185.48773 * 4 2 1 6 6 H 1.09003 * 109.87851 * 306.69357 * 5 4 2 7 7 C 1.54324 * 109.88201 * 67.87370 * 5 4 2 8 8 C 1.55148 * 102.94661 * 141.60770 * 7 5 4 9 9 C 1.54909 * 101.58080 * 324.49964 * 8 7 5 10 10 N 1.47024 * 109.88182 * 185.67585 * 5 4 2 11 11 C 1.34777 * 125.64668 * 61.61120 * 10 5 4 12 12 O 1.21348 * 120.00076 * 354.98246 * 11 10 5 13 13 C 1.49447 * 120.00295 * 174.97709 * 11 10 5 14 14 O 1.21360 * 119.99534 * 6.75048 * 13 11 10 15 15 N 1.34777 * 120.00484 * 186.74825 * 13 11 10 16 16 C 1.46924 * 120.62807 * 6.52383 * 15 13 11 17 17 C 1.53198 * 108.77377 * 233.58879 * 16 15 13 18 18 C 1.53038 * 109.30983 * 305.36187 * 17 16 15 19 19 C 1.53048 * 109.53763 * 61.36979 * 18 17 16 20 20 H 1.08995 * 109.49646 * 58.58052 * 19 18 17 21 21 C 1.50696 * 109.49497 * 178.68264 * 19 18 17 22 22 H 1.07997 * 120.00738 * 34.72793 * 21 19 18 23 23 C 1.37881 * 119.99431 * 214.72705 * 21 19 18 24 24 N 1.31522 * 119.99909 * 184.51229 * 23 21 19 25 25 Si 1.86803 * 120.00324 * 4.51505 * 23 21 19 26 26 H 1.48497 * 109.47013 * 94.41949 * 25 23 21 27 27 H 1.48498 * 109.46956 * 214.41873 * 25 23 21 28 28 H 1.48494 * 109.46856 * 334.41902 * 25 23 21 29 29 C 1.46928 * 120.63160 * 186.24425 * 15 13 11 30 30 H 1.08998 * 109.46632 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46687 * 299.99906 * 1 2 3 32 32 H 1.08992 * 109.47197 * 59.99947 * 1 2 3 33 33 H 1.09002 * 109.47215 * 120.00035 * 2 1 3 34 34 H 1.09005 * 109.47274 * 64.20551 * 3 2 1 35 35 H 1.09004 * 109.47566 * 184.20626 * 3 2 1 36 36 H 1.09005 * 109.47198 * 304.20723 * 3 2 1 37 37 H 1.08995 * 109.47326 * 305.49295 * 4 2 1 38 38 H 1.09007 * 109.46703 * 65.49000 * 4 2 1 39 39 H 1.09005 * 110.71488 * 259.97410 * 7 5 4 40 40 H 1.08999 * 110.71844 * 23.23867 * 7 5 4 41 41 H 1.09001 * 111.00760 * 206.42226 * 8 7 5 42 42 H 1.08997 * 111.00505 * 82.56789 * 8 7 5 43 43 H 1.09001 * 110.36806 * 278.16713 * 9 8 7 44 44 H 1.08997 * 110.37157 * 155.84910 * 9 8 7 45 45 H 1.09000 * 109.58528 * 353.37211 * 16 15 13 46 46 H 1.08997 * 109.58629 * 113.65633 * 16 15 13 47 47 H 1.08988 * 109.49805 * 65.31444 * 17 16 15 48 48 H 1.09000 * 109.49456 * 185.41910 * 17 16 15 49 49 H 1.09002 * 109.46152 * 181.38642 * 18 17 16 50 50 H 1.09004 * 109.46521 * 301.36326 * 18 17 16 51 51 H 0.96995 * 120.00066 * 180.02562 * 24 23 21 52 52 H 1.08996 * 109.58826 * 246.20343 * 29 15 13 53 53 H 1.09001 * 109.58429 * 6.62997 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5638 -0.8418 -1.1822 6 1 4.0061 0.1398 -1.0124 7 6 3.9645 -1.8055 -0.0453 8 6 5.1679 -2.5755 -0.6503 9 6 4.7495 -2.6874 -2.1376 10 7 4.0760 -1.4108 -2.4374 11 6 3.9501 -0.8572 -3.6597 12 8 3.2951 0.1542 -3.8032 13 6 4.6173 -1.4888 -4.8385 14 8 5.1689 -2.5632 -4.7198 15 7 4.6064 -0.8652 -6.0333 16 6 4.0697 0.4964 -6.1621 17 6 3.0083 0.5055 -7.2668 18 6 3.6140 -0.0559 -8.5552 19 6 4.0583 -1.5021 -8.3242 20 1 3.2025 -2.1000 -8.0110 21 6 4.6249 -2.0644 -9.6023 22 1 5.1784 -1.4258 -10.2747 23 6 4.4367 -3.3944 -9.9133 24 7 5.0054 -3.9065 -10.9830 25 14 3.3740 -4.4691 -8.8155 26 1 1.9879 -4.5021 -9.3473 27 1 3.9264 -5.8473 -8.7877 28 1 3.3630 -3.9123 -7.4389 29 6 5.1367 -1.5318 -7.2305 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 -0.3633 0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 1.7396 1.9341 0.9253 35 1 3.1275 1.4435 -0.0754 36 1 1.6165 1.9776 -0.8499 37 1 1.5986 -1.7166 -1.2998 38 1 1.7591 -0.1537 -2.1365 39 1 4.2686 -1.2499 0.8418 40 1 3.1473 -2.4883 0.1874 41 1 5.2683 -3.5618 -0.1973 42 1 6.0899 -2.0037 -0.5459 43 1 4.0611 -3.5211 -2.2763 44 1 5.6281 -2.8107 -2.7707 45 1 3.6175 0.8017 -5.2185 46 1 4.8751 1.1837 -6.4207 47 1 2.1624 -0.1113 -6.9636 48 1 2.6709 1.5276 -7.4387 49 1 2.8680 -0.0277 -9.3495 50 1 4.4752 0.5466 -8.8443 51 1 4.8727 -4.8420 -11.2020 52 1 6.0270 -1.0069 -7.5768 53 1 5.3888 -2.5651 -6.9919 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328139923.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:57 Heat of formation + Delta-G solvation = -86.018693 kcal Electronic energy + Delta-G solvation = -31180.092900 eV Core-core repulsion = 27243.856643 eV Total energy + Delta-G solvation = -3936.236258 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -42.21786 -40.52197 -38.93709 -38.59175 -36.82411 -35.23416 -33.63926 -32.70593 -32.19567 -31.12187 -28.01596 -27.84947 -27.03177 -26.52472 -25.04949 -23.48515 -23.00477 -22.20265 -21.04798 -20.51317 -20.09839 -19.08936 -18.31318 -18.03507 -17.63882 -16.86368 -16.52578 -16.37638 -15.96618 -15.61699 -15.34377 -15.07090 -15.02761 -14.94590 -14.60931 -14.50637 -14.45711 -14.06351 -14.02945 -13.82800 -13.72490 -13.26547 -13.14121 -13.05953 -13.04484 -12.76027 -12.64679 -12.41556 -12.08842 -12.06655 -12.02180 -11.88481 -11.71511 -11.60285 -11.54040 -11.48025 -11.32804 -11.26435 -11.09816 -10.76730 -10.00407 -9.88041 -9.65872 -8.37087 -6.40029 0.26864 1.17501 1.25061 1.29946 1.39675 2.04405 2.26501 2.33639 2.99742 3.05775 3.56639 3.66001 3.77792 4.00717 4.04057 4.08173 4.12029 4.15293 4.21519 4.29987 4.41503 4.43058 4.47498 4.52273 4.65573 4.72670 4.76402 4.79863 4.80831 4.86026 4.90398 4.92462 4.99075 4.99920 5.03568 5.06041 5.08039 5.12924 5.13908 5.19975 5.26230 5.29961 5.35913 5.39578 5.47565 5.52934 5.56831 5.57730 5.65152 6.02948 6.24084 6.28082 6.59254 6.69401 6.87830 7.26449 8.79251 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.015358 B = 0.003283 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.753401 B = 8526.765730 C = 9161.568193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 C -0.149 4.149 4 C -0.125 4.125 5 C 0.127 3.873 6 H 0.085 0.915 7 C -0.118 4.118 8 C -0.125 4.125 9 C 0.085 3.915 10 N -0.582 5.582 11 C 0.526 3.474 12 O -0.517 6.517 13 C 0.489 3.511 14 O -0.553 6.553 15 N -0.576 5.576 16 C 0.050 3.950 17 C -0.122 4.122 18 C -0.103 4.103 19 C 0.004 3.996 20 H 0.026 0.974 21 C -0.510 4.510 22 H 0.044 0.956 23 C 0.023 3.977 24 N -0.940 5.940 25 Si 0.932 3.068 26 H -0.266 1.266 27 H -0.284 1.284 28 H -0.263 1.263 29 C 0.122 3.878 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.042 0.958 33 H 0.091 0.909 34 H 0.066 0.934 35 H 0.056 0.944 36 H 0.041 0.959 37 H 0.060 0.940 38 H 0.053 0.947 39 H 0.110 0.890 40 H 0.090 0.910 41 H 0.107 0.893 42 H 0.081 0.919 43 H 0.069 0.931 44 H 0.081 0.919 45 H 0.157 0.843 46 H 0.074 0.926 47 H 0.050 0.950 48 H 0.099 0.901 49 H 0.055 0.945 50 H 0.057 0.943 51 H 0.267 0.733 52 H 0.067 0.933 53 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.471 8.486 29.091 30.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.104 4.104 3 C -0.206 4.206 4 C -0.163 4.163 5 C 0.026 3.974 6 H 0.103 0.897 7 C -0.155 4.155 8 C -0.162 4.162 9 C -0.037 4.037 10 N -0.314 5.314 11 C 0.310 3.690 12 O -0.397 6.397 13 C 0.272 3.728 14 O -0.432 6.432 15 N -0.307 5.307 16 C -0.070 4.070 17 C -0.160 4.160 18 C -0.141 4.141 19 C -0.015 4.015 20 H 0.044 0.956 21 C -0.549 4.549 22 H 0.063 0.937 23 C -0.175 4.175 24 N -0.579 5.579 25 Si 0.758 3.242 26 H -0.191 1.191 27 H -0.210 1.210 28 H -0.187 1.187 29 C 0.000 4.000 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.061 0.939 33 H 0.109 0.891 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.060 0.940 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.128 0.872 40 H 0.108 0.892 41 H 0.126 0.874 42 H 0.100 0.900 43 H 0.087 0.913 44 H 0.099 0.901 45 H 0.173 0.827 46 H 0.092 0.908 47 H 0.069 0.931 48 H 0.117 0.883 49 H 0.074 0.926 50 H 0.075 0.925 51 H 0.077 0.923 52 H 0.085 0.915 53 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.503 8.329 28.883 30.560 hybrid contribution -0.134 -0.986 -0.940 1.369 sum -5.637 7.343 27.943 29.437 Atomic orbital electron populations 1.21835 0.95045 1.01793 1.01797 1.21043 0.95848 0.96266 0.97255 1.21896 1.01066 0.95851 1.01760 1.22011 0.93981 1.00868 0.99468 1.22133 0.94656 0.98513 0.82125 0.89673 1.22793 0.98498 0.97691 0.96545 1.22841 0.98657 1.02966 0.91785 1.22822 0.97900 0.84304 0.98664 1.48551 1.53763 1.23537 1.05553 1.19632 0.81668 0.84241 0.83494 1.90263 1.41529 1.25328 1.82572 1.20440 0.81638 0.85672 0.85026 1.90663 1.45606 1.22783 1.84165 1.48427 1.57852 1.17541 1.06895 1.23346 0.97703 0.80478 1.05435 1.21858 0.97515 1.02253 0.94351 1.21522 1.00079 0.95422 0.97073 1.19556 0.93844 0.95665 0.92465 0.95592 1.21155 1.34376 0.94919 1.04408 0.93726 1.25799 0.96443 0.99203 0.96083 1.70022 1.45120 1.14638 1.28128 0.85946 0.79841 0.78265 0.80191 1.19070 1.21030 1.18730 1.22216 0.97895 0.96637 0.83279 0.92645 0.91442 0.93886 0.89086 0.91476 0.92486 0.93979 0.92152 0.92831 0.87189 0.89170 0.87413 0.89987 0.91295 0.90055 0.82747 0.90805 0.93125 0.88296 0.92609 0.92456 0.92343 0.91458 0.92601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.19 71.98 0.66 -1.23 16 2 C -0.09 -1.08 2.84 -10.79 -0.03 -1.11 16 3 C -0.15 -1.93 9.06 71.98 0.65 -1.28 16 4 C -0.12 -2.25 4.15 30.59 0.13 -2.13 16 5 C 0.13 2.21 2.81 45.34 0.13 2.34 16 6 H 0.09 1.48 6.25 -2.39 -0.01 1.46 16 7 C -0.12 -1.21 5.56 31.78 0.18 -1.03 16 8 C -0.12 -1.55 7.08 31.98 0.23 -1.32 16 9 C 0.08 1.87 6.14 86.86 0.53 2.40 16 10 N -0.58 -14.42 3.06 -789.63 -2.42 -16.84 16 11 C 0.53 16.51 7.62 87.27 0.67 17.18 16 12 O -0.52 -16.39 11.88 -3.24 -0.04 -16.42 16 13 C 0.49 18.50 7.71 87.27 0.67 19.17 16 14 O -0.55 -23.09 13.22 -3.28 -0.04 -23.13 16 15 N -0.58 -22.20 2.97 -819.63 -2.43 -24.63 16 16 C 0.05 1.61 6.27 86.37 0.54 2.15 16 17 C -0.12 -3.89 6.08 30.67 0.19 -3.71 16 18 C -0.10 -4.04 5.15 30.62 0.16 -3.89 16 19 C 0.00 0.21 1.89 -11.32 -0.02 0.19 16 20 H 0.03 1.29 5.11 -2.39 -0.01 1.28 16 21 C -0.51 -29.00 8.86 25.60 0.23 -28.77 16 22 H 0.04 2.76 8.06 -2.91 -0.02 2.73 16 23 C 0.02 1.37 5.47 84.65 0.46 1.83 16 24 N -0.94 -58.80 13.96 21.45 0.30 -58.50 16 25 Si 0.93 46.66 27.29 68.60 1.87 48.54 16 26 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 27 H -0.28 -14.02 7.11 99.48 0.71 -13.32 16 28 H -0.26 -13.14 6.40 99.48 0.64 -12.50 16 29 C 0.12 5.46 5.71 86.51 0.49 5.95 16 30 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 32 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.09 0.81 7.35 -2.39 -0.02 0.80 16 34 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 35 H 0.06 0.73 6.28 -2.38 -0.01 0.71 16 36 H 0.04 0.68 8.14 -2.38 -0.02 0.66 16 37 H 0.06 1.12 8.00 -2.39 -0.02 1.10 16 38 H 0.05 1.30 6.54 -2.38 -0.02 1.29 16 39 H 0.11 0.62 8.14 -2.38 -0.02 0.60 16 40 H 0.09 0.80 7.76 -2.39 -0.02 0.78 16 41 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 44 H 0.08 2.22 6.05 -2.39 -0.01 2.20 16 45 H 0.16 4.79 3.77 -79.48 -0.30 4.49 16 46 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 47 H 0.05 1.70 8.14 -2.39 -0.02 1.69 16 48 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 49 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 50 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 51 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 52 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 53 H 0.06 2.78 7.05 -2.39 -0.02 2.76 16 Total: -1.00 -70.26 397.23 3.62 -66.64 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: 0.52 Total: 17.61 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: 5.86 Total: 6.74 kcal Atomic # 7 Polarization: -95.41 SS G_CDS: -4.55 Total: -99.96 kcal Atomic # 8 Polarization: -39.48 SS G_CDS: -0.08 Total: -39.56 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 1.87 Total: 48.54 kcal Total: -70.26 3.62 -66.64 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328139923.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.383 kcal (2) G-P(sol) polarization free energy of solvation -70.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds