Wall clock time and date at job start Tue Mar 31 2020 19:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47479 * 2 1 4 4 C 1.53002 * 109.47252 * 119.99864 * 2 1 3 5 5 C 1.53000 * 109.47184 * 64.99706 * 4 2 1 6 6 H 1.08996 * 110.91283 * 308.90686 * 5 4 2 7 7 C 1.55154 * 111.00779 * 184.99896 * 5 4 2 8 8 C 1.54323 * 103.10430 * 206.51593 * 7 5 4 9 9 N 1.47018 * 107.26928 * 22.10399 * 8 7 5 10 10 C 1.34786 * 125.64444 * 181.09888 * 9 8 7 11 11 O 1.21347 * 119.99732 * 179.97438 * 10 9 8 12 12 C 1.49452 * 119.99993 * 359.97399 * 10 9 8 13 13 O 1.21345 * 119.99991 * 6.47303 * 12 10 9 14 14 N 1.34775 * 120.00062 * 186.47493 * 12 10 9 15 15 C 1.46929 * 120.62838 * 7.02465 * 14 12 10 16 16 C 1.53198 * 108.77133 * 233.58523 * 15 14 12 17 17 C 1.53033 * 109.31412 * 305.36246 * 16 15 14 18 18 C 1.53050 * 109.53828 * 61.36285 * 17 16 15 19 19 H 1.09003 * 109.49019 * 58.62431 * 18 17 16 20 20 C 1.50701 * 109.49592 * 178.68309 * 18 17 16 21 21 H 1.07995 * 120.00232 * 0.02562 * 20 18 17 22 22 C 1.37875 * 119.99296 * 180.02562 * 20 18 17 23 23 N 1.31508 * 120.00615 * 0.02562 * 22 20 18 24 24 Si 1.86802 * 119.99484 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47324 * 90.00021 * 24 22 20 26 26 H 1.48506 * 109.47133 * 210.00049 * 24 22 20 27 27 H 1.48501 * 109.47128 * 329.99977 * 24 22 20 28 28 C 1.46925 * 120.63036 * 186.73966 * 14 12 10 29 29 C 1.47420 * 108.70775 * 1.05835 * 9 8 7 30 30 H 1.09005 * 109.47231 * 300.00007 * 1 2 3 31 31 H 1.09003 * 109.47340 * 59.99832 * 1 2 3 32 32 H 1.08999 * 109.47404 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.47231 * 239.99993 * 2 1 3 34 34 H 1.09002 * 109.47560 * 180.02562 * 3 2 1 35 35 H 1.09008 * 109.46545 * 300.00312 * 3 2 1 36 36 H 1.08999 * 109.47575 * 59.99698 * 3 2 1 37 37 H 1.08994 * 109.46871 * 304.99649 * 4 2 1 38 38 H 1.08999 * 109.47268 * 185.00010 * 4 2 1 39 39 H 1.08998 * 110.72029 * 88.05914 * 7 5 4 40 40 H 1.09003 * 110.71709 * 324.96647 * 7 5 4 41 41 H 1.08995 * 109.88340 * 141.52326 * 8 7 5 42 42 H 1.09005 * 109.87610 * 262.68487 * 8 7 5 43 43 H 1.09000 * 109.58643 * 353.36892 * 15 14 12 44 44 H 1.08991 * 109.59077 * 113.65765 * 15 14 12 45 45 H 1.09005 * 109.49769 * 65.31620 * 16 15 14 46 46 H 1.09002 * 109.49156 * 185.40867 * 16 15 14 47 47 H 1.09000 * 109.46269 * 181.38840 * 17 16 15 48 48 H 1.09004 * 109.46081 * 301.36405 * 17 16 15 49 49 H 0.97000 * 120.00538 * 179.97438 * 23 22 20 50 50 H 1.08999 * 109.58160 * 246.20012 * 28 14 12 51 51 H 1.08993 * 109.58773 * 6.62732 * 28 14 12 52 52 H 1.08998 * 110.36177 * 94.71023 * 29 9 8 53 53 H 1.08991 * 110.36863 * 216.92465 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6352 -2.1954 1.1881 6 1 0.5693 -2.2981 0.9844 7 6 2.0253 -2.9341 2.4955 8 6 2.1996 -4.3960 2.0328 9 7 2.4576 -4.3679 0.5857 10 6 2.6446 -5.4471 -0.1998 11 8 2.8507 -5.3048 -1.3872 12 6 2.5980 -6.8189 0.3914 13 8 2.2766 -6.9688 1.5519 14 7 2.9131 -7.8895 -0.3642 15 6 3.4506 -7.7162 -1.7206 16 6 2.5939 -8.5276 -2.6977 17 6 2.5308 -9.9826 -2.2278 18 6 1.8777 -10.0461 -0.8451 19 1 0.8771 -9.6166 -0.8955 20 6 1.7867 -11.4821 -0.3972 21 1 2.1579 -12.2711 -1.0345 22 6 1.2296 -11.7886 0.8261 23 7 0.7772 -10.8279 1.6019 24 14 1.1175 -13.5686 1.3816 25 1 2.3476 -13.9322 2.1297 26 1 -0.0660 -13.7386 2.2625 27 1 0.9814 -14.4500 0.1943 28 6 2.7315 -9.2518 0.1551 29 6 2.4770 -2.9641 0.1360 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8901 36 1 1.6767 1.9564 0.8899 37 1 1.6054 -0.2616 2.1369 38 1 3.1263 -0.6443 1.2952 39 1 1.2284 -2.8560 3.2351 40 1 2.9605 -2.5421 2.8955 41 1 3.0437 -4.8508 2.5512 42 1 1.2893 -4.9601 2.2363 43 1 3.4179 -6.6618 -1.9947 44 1 4.4808 -8.0706 -1.7535 45 1 1.5868 -8.1118 -2.7304 46 1 3.0379 -8.4854 -3.6923 47 1 1.9422 -10.5674 -2.9346 48 1 3.5403 -10.3901 -2.1713 49 1 0.3849 -11.0436 2.4625 50 1 3.7035 -9.7311 0.2714 51 1 2.2242 -9.2109 1.1189 52 1 3.4988 -2.5847 0.1212 53 1 2.0261 -2.8761 -0.8523 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328182483.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:03 Heat of formation + Delta-G solvation = -90.109190 kcal Electronic energy + Delta-G solvation = -30434.517255 eV Core-core repulsion = 26498.103621 eV Total energy + Delta-G solvation = -3936.413635 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.07485 -40.33502 -39.06405 -38.50540 -36.89345 -35.23577 -33.53149 -32.92927 -31.58943 -30.35730 -28.29039 -27.95911 -27.13182 -26.53200 -24.65614 -23.64560 -23.09919 -21.74014 -21.19680 -20.41784 -20.07604 -18.66351 -18.21794 -17.83360 -17.54801 -16.94014 -16.60087 -16.51806 -15.68379 -15.53034 -15.37104 -15.02499 -14.97198 -14.80132 -14.61956 -14.47182 -14.29764 -14.02824 -13.74058 -13.68684 -13.49413 -13.27568 -13.04159 -12.97657 -12.90232 -12.84783 -12.47208 -12.40031 -12.32439 -12.17285 -12.05963 -11.85573 -11.73239 -11.54987 -11.35379 -11.26723 -11.18117 -11.11250 -10.99482 -10.57352 -10.06220 -9.88324 -9.53462 -8.13570 -6.30074 0.32145 1.24530 1.41221 1.41561 1.52375 2.10869 2.38322 2.44378 3.09041 3.16826 3.51485 3.60193 3.78046 4.12998 4.13752 4.16113 4.16601 4.23632 4.32601 4.33746 4.40855 4.55329 4.59714 4.60557 4.70487 4.77286 4.79122 4.85559 4.88055 4.91286 4.95863 4.98187 5.00995 5.03464 5.10295 5.14215 5.15509 5.20972 5.21474 5.25545 5.31459 5.34225 5.44252 5.49086 5.55308 5.57704 5.58989 5.81740 5.91292 6.02246 6.26246 6.38419 6.64447 6.81220 6.97313 7.39702 8.90794 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.019964 B = 0.002543 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.195994 B =11010.023950 C =11834.931095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.101 4.101 3 C -0.145 4.145 4 C -0.094 4.094 5 C -0.094 4.094 6 H 0.086 0.914 7 C -0.117 4.117 8 C 0.101 3.899 9 N -0.586 5.586 10 C 0.526 3.474 11 O -0.525 6.525 12 C 0.486 3.514 13 O -0.549 6.549 14 N -0.576 5.576 15 C 0.050 3.950 16 C -0.120 4.120 17 C -0.106 4.106 18 C 0.039 3.961 19 H -0.012 1.012 20 C -0.535 4.535 21 H 0.063 0.937 22 C 0.010 3.990 23 N -0.916 5.916 24 Si 0.960 3.040 25 H -0.274 1.274 26 H -0.286 1.286 27 H -0.264 1.264 28 C 0.124 3.876 29 C 0.104 3.896 30 H 0.060 0.940 31 H 0.052 0.948 32 H 0.049 0.951 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.052 0.948 36 H 0.059 0.941 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.099 0.901 40 H 0.096 0.904 41 H 0.066 0.934 42 H 0.060 0.940 43 H 0.153 0.847 44 H 0.071 0.929 45 H 0.044 0.956 46 H 0.098 0.902 47 H 0.054 0.946 48 H 0.058 0.942 49 H 0.262 0.738 50 H 0.044 0.956 51 H 0.084 0.916 52 H 0.088 0.912 53 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.240 24.274 -1.556 24.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.120 4.120 3 C -0.203 4.203 4 C -0.131 4.131 5 C -0.113 4.113 6 H 0.104 0.896 7 C -0.155 4.155 8 C -0.021 4.021 9 N -0.318 5.318 10 C 0.310 3.690 11 O -0.405 6.405 12 C 0.269 3.731 13 O -0.428 6.428 14 N -0.308 5.308 15 C -0.071 4.071 16 C -0.158 4.158 17 C -0.144 4.144 18 C 0.020 3.980 19 H 0.006 0.994 20 C -0.573 4.573 21 H 0.081 0.919 22 C -0.189 4.189 23 N -0.554 5.554 24 Si 0.786 3.214 25 H -0.199 1.199 26 H -0.212 1.212 27 H -0.189 1.189 28 C 0.002 3.998 29 C -0.017 4.017 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.101 0.899 38 H 0.094 0.906 39 H 0.118 0.882 40 H 0.115 0.885 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.169 0.831 44 H 0.089 0.911 45 H 0.063 0.937 46 H 0.117 0.883 47 H 0.073 0.927 48 H 0.077 0.923 49 H 0.071 0.929 50 H 0.062 0.938 51 H 0.102 0.898 52 H 0.106 0.894 53 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.112 24.226 -1.440 24.615 hybrid contribution -0.414 -1.608 0.516 1.739 sum 3.698 22.618 -0.924 22.937 Atomic orbital electron populations 1.21909 0.95440 1.01517 1.01938 1.21156 0.95842 0.96645 0.98310 1.21817 1.01121 0.95391 1.01938 1.21551 1.01683 0.91291 0.98601 1.22504 0.99974 0.95431 0.93390 0.89564 1.22790 1.04229 0.90755 0.97734 1.22301 1.01663 0.99599 0.78568 1.48422 1.66688 1.06197 1.10473 1.19776 0.78162 0.85159 0.85915 1.90263 1.50399 1.84753 1.15104 1.20349 0.79846 0.86579 0.86341 1.90708 1.48535 1.86323 1.17268 1.48457 1.59671 1.06081 1.16569 1.23281 0.96818 1.07294 0.79659 1.21816 0.99612 0.95018 0.99315 1.21562 1.00263 0.95899 0.96683 1.18985 0.92827 0.94243 0.91934 0.99432 1.21478 1.40044 0.92736 1.03078 0.91873 1.25898 0.94616 1.01503 0.96884 1.70054 1.40634 1.33592 1.11134 0.85517 0.77606 0.80019 0.78300 1.19921 1.21159 1.18866 1.22026 0.98584 0.78127 1.01064 1.22741 1.01768 0.77726 0.99424 0.92104 0.92934 0.93180 0.91770 0.92374 0.92873 0.92227 0.89917 0.90599 0.88223 0.88538 0.91564 0.92199 0.83130 0.91078 0.93719 0.88335 0.92739 0.92337 0.92932 0.93773 0.89755 0.89435 0.90559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 8.97 71.98 0.65 -1.08 16 2 C -0.10 -1.08 2.87 -10.80 -0.03 -1.11 16 3 C -0.15 -1.32 9.19 71.98 0.66 -0.66 16 4 C -0.09 -0.91 4.20 30.59 0.13 -0.78 16 5 C -0.09 -1.34 2.89 -9.33 -0.03 -1.37 16 6 H 0.09 1.35 6.31 -2.39 -0.02 1.33 16 7 C -0.12 -1.77 6.41 31.78 0.20 -1.57 16 8 C 0.10 2.59 5.50 86.73 0.48 3.07 16 9 N -0.59 -16.58 3.33 -812.95 -2.71 -19.29 16 10 C 0.53 18.80 7.81 87.27 0.68 19.48 16 11 O -0.53 -18.87 13.36 -3.24 -0.04 -18.91 16 12 C 0.49 21.10 7.70 87.27 0.67 21.78 16 13 O -0.55 -26.54 13.62 -3.23 -0.04 -26.58 16 14 N -0.58 -25.47 2.97 -819.66 -2.43 -27.90 16 15 C 0.05 1.80 6.27 86.36 0.54 2.34 16 16 C -0.12 -4.25 6.08 30.67 0.19 -4.06 16 17 C -0.11 -4.44 5.10 30.62 0.16 -4.28 16 18 C 0.04 2.06 2.26 -11.31 -0.03 2.03 16 19 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 20 C -0.54 -29.87 8.56 25.60 0.22 -29.65 16 21 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 22 C 0.01 0.59 5.30 84.66 0.45 1.04 16 23 N -0.92 -55.26 11.41 21.45 0.24 -55.02 16 24 Si 0.96 44.29 29.54 68.60 2.03 46.32 16 25 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 26 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 27 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 28 C 0.12 6.36 5.41 86.51 0.47 6.83 16 29 C 0.10 2.06 5.82 86.93 0.51 2.57 16 30 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 31 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.05 0.66 6.42 -2.39 -0.02 0.64 16 33 H 0.06 0.79 7.58 -2.38 -0.02 0.78 16 34 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.05 0.49 8.14 -2.38 -0.02 0.47 16 36 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.08 0.65 7.97 -2.39 -0.02 0.63 16 39 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.10 1.13 8.04 -2.39 -0.02 1.11 16 41 H 0.07 1.84 7.84 -2.39 -0.02 1.82 16 42 H 0.06 1.84 7.44 -2.38 -0.02 1.82 16 43 H 0.15 5.31 3.78 -78.84 -0.30 5.02 16 44 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 45 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 46 H 0.10 2.76 8.14 -2.39 -0.02 2.74 16 47 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 48 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 49 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 50 H 0.04 2.24 8.14 -2.39 -0.02 2.22 16 51 H 0.08 5.02 5.20 -2.39 -0.01 5.01 16 52 H 0.09 1.50 7.91 -2.39 -0.02 1.48 16 53 H 0.08 1.62 7.96 -2.39 -0.02 1.60 16 Total: -1.00 -69.14 402.37 3.54 -65.60 By element: Atomic # 1 Polarization: 20.63 SS G_CDS: 0.58 Total: 21.22 kcal Atomic # 6 Polarization: 8.65 SS G_CDS: 5.91 Total: 14.57 kcal Atomic # 7 Polarization: -97.31 SS G_CDS: -4.89 Total: -102.20 kcal Atomic # 8 Polarization: -45.41 SS G_CDS: -0.09 Total: -45.50 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -69.14 3.54 -65.60 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328182483.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.514 kcal (2) G-P(sol) polarization free energy of solvation -69.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds