Wall clock time and date at job start Tue Mar 31 2020 19:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47005 * 2 1 4 4 C 1.52993 * 109.47046 * 119.99539 * 2 1 3 5 5 C 1.52999 * 109.47057 * 172.57326 * 4 2 1 6 6 H 1.08998 * 110.88851 * 63.37036 * 5 4 2 7 7 C 1.55403 * 111.07389 * 187.16008 * 5 4 2 8 8 C 1.54325 * 102.83195 * 153.48601 * 7 5 4 9 9 N 1.47020 * 107.40158 * 337.97545 * 8 7 5 10 10 C 1.34771 * 125.64698 * 178.82769 * 9 8 7 11 11 O 1.21359 * 119.99601 * 180.02562 * 10 9 8 12 12 C 1.49442 * 120.00349 * 0.02564 * 10 9 8 13 13 O 1.21349 * 120.00018 * 6.64043 * 12 10 9 14 14 N 1.34778 * 120.00549 * 186.64686 * 12 10 9 15 15 C 1.46927 * 120.62665 * 7.78373 * 14 12 10 16 16 C 1.53190 * 108.77750 * 126.36861 * 15 14 12 17 17 C 1.53043 * 109.30873 * 54.63503 * 16 15 14 18 18 C 1.53036 * 109.53967 * 298.63243 * 17 16 15 19 19 H 1.09001 * 109.50175 * 301.38518 * 18 17 16 20 20 C 1.50697 * 109.50032 * 181.31759 * 18 17 16 21 21 H 1.08001 * 119.99830 * 359.97438 * 20 18 17 22 22 C 1.37874 * 120.00136 * 180.02562 * 20 18 17 23 23 N 1.31513 * 119.99974 * 0.02562 * 22 20 18 24 24 Si 1.86803 * 119.99933 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47044 * 60.00128 * 24 22 20 26 26 H 1.48504 * 109.47078 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.47149 * 300.00101 * 24 22 20 28 28 C 1.46914 * 120.63478 * 187.50491 * 14 12 10 29 29 C 1.47427 * 108.70048 * 358.86216 * 9 8 7 30 30 H 1.09000 * 109.47774 * 304.92573 * 1 2 3 31 31 H 1.09005 * 109.47389 * 64.92963 * 1 2 3 32 32 H 1.09004 * 109.46956 * 184.92754 * 1 2 3 33 33 H 1.08999 * 109.47119 * 240.00029 * 2 1 3 34 34 H 1.08995 * 109.47491 * 179.97438 * 3 2 1 35 35 H 1.09008 * 109.46897 * 300.00621 * 3 2 1 36 36 H 1.08999 * 109.47382 * 59.99301 * 3 2 1 37 37 H 1.09007 * 109.47171 * 52.57636 * 4 2 1 38 38 H 1.08997 * 109.47787 * 292.57024 * 4 2 1 39 39 H 1.08996 * 110.69856 * 35.19179 * 7 5 4 40 40 H 1.09006 * 110.85217 * 271.84911 * 7 5 4 41 41 H 1.08999 * 109.87903 * 218.47760 * 8 7 5 42 42 H 1.08996 * 109.87909 * 97.47061 * 8 7 5 43 43 H 1.09004 * 109.58742 * 246.15669 * 15 14 12 44 44 H 1.09005 * 109.59002 * 6.44031 * 15 14 12 45 45 H 1.09000 * 109.50018 * 174.58389 * 16 15 14 46 46 H 1.08995 * 109.49974 * 294.68453 * 16 15 14 47 47 H 1.09003 * 109.46124 * 58.65728 * 17 16 15 48 48 H 1.09006 * 109.45729 * 178.62576 * 17 16 15 49 49 H 0.97008 * 119.99549 * 179.97438 * 23 22 20 50 50 H 1.08998 * 109.59044 * 353.41729 * 28 14 12 51 51 H 1.09002 * 109.58867 * 113.84104 * 28 14 12 52 52 H 1.09010 * 110.36513 * 142.96931 * 29 9 8 53 53 H 1.09000 * 110.36791 * 265.17915 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 1.2492 5 6 3.5585 -0.8846 1.1595 6 1 4.0540 0.0862 1.1493 7 6 4.0949 -1.7684 2.3198 8 6 5.3849 -2.3705 1.7239 9 7 5.2640 -2.3077 0.2601 10 6 6.1963 -2.7162 -0.6233 11 8 5.9884 -2.6160 -1.8147 12 6 7.4860 -3.2926 -0.1357 13 8 7.6466 -3.5047 1.0483 14 7 8.4709 -3.5767 -1.0108 15 6 8.3612 -3.1711 -2.4187 16 6 9.6101 -2.3701 -2.7999 17 6 10.8582 -3.1956 -2.4790 18 6 10.9090 -3.4837 -0.9768 19 1 10.9204 -2.5432 -0.4261 20 6 12.1549 -4.2689 -0.6571 21 1 12.8420 -4.5363 -1.4463 22 6 12.4171 -4.6467 0.6427 23 7 11.5796 -4.3223 1.6034 24 14 13.9611 -5.6206 1.0388 25 1 15.1574 -4.8333 0.6459 26 1 14.0099 -5.8998 2.4966 27 1 13.9439 -6.9024 0.2891 28 6 9.6772 -4.2924 -0.5738 29 6 3.9544 -1.7231 -0.0814 30 1 -0.3635 0.5883 0.8425 31 1 -0.3634 0.4355 -0.9309 32 1 -0.3633 -1.0239 0.0883 33 1 1.8933 -0.5138 -0.8900 34 1 3.1299 1.4426 0.0005 35 1 1.6765 1.9564 -0.8900 36 1 1.6765 1.9564 0.8899 37 1 1.5722 -1.7033 1.3182 38 1 1.7892 -0.1363 2.1342 39 1 3.3811 -2.5541 2.5673 40 1 4.3217 -1.1618 3.1967 41 1 5.4918 -3.4072 2.0430 42 1 6.2490 -1.7915 2.0497 43 1 8.2886 -4.0570 -3.0496 44 1 7.4732 -2.5532 -2.5530 45 1 9.5868 -2.1453 -3.8662 46 1 9.6331 -1.4400 -2.2320 47 1 10.8224 -4.1364 -3.0282 48 1 11.7477 -2.6377 -2.7718 49 1 11.7640 -4.5885 2.5178 50 1 9.6588 -4.4121 0.5094 51 1 9.7142 -5.2716 -1.0512 52 1 4.0420 -1.0831 -0.9595 53 1 3.2219 -2.5107 -0.2586 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328182484.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:07 Heat of formation + Delta-G solvation = -93.053974 kcal Electronic energy + Delta-G solvation = -30472.534272 eV Core-core repulsion = 26535.992941 eV Total energy + Delta-G solvation = -3936.541330 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.06042 -40.36166 -39.05204 -38.51535 -36.87364 -35.24529 -33.53900 -32.91450 -31.62677 -30.35174 -28.29017 -27.94232 -27.12808 -26.53563 -24.65205 -23.65028 -23.09696 -21.81522 -21.22389 -20.31617 -20.02750 -18.62737 -18.22787 -17.94826 -17.38679 -17.06536 -16.62410 -16.42363 -15.70009 -15.51953 -15.21708 -15.07428 -14.94657 -14.77140 -14.65969 -14.43578 -14.31459 -14.03702 -13.82579 -13.68008 -13.50572 -13.32484 -13.03443 -12.97540 -12.85894 -12.74292 -12.50370 -12.40453 -12.29703 -12.14842 -12.11716 -11.85836 -11.74445 -11.59652 -11.32848 -11.30537 -11.17245 -11.10012 -10.99010 -10.55064 -10.17777 -9.86534 -9.53293 -8.11992 -6.29188 0.33522 1.24654 1.41712 1.43521 1.51279 2.10423 2.38445 2.44691 3.10341 3.17097 3.50783 3.59797 3.80036 4.10489 4.13118 4.14937 4.17226 4.23288 4.30931 4.32561 4.40079 4.56163 4.58824 4.60827 4.70569 4.77141 4.80333 4.84754 4.88939 4.90273 4.95832 4.96832 5.00918 5.04233 5.10258 5.14457 5.16651 5.19287 5.21143 5.24424 5.29184 5.34028 5.44240 5.47906 5.55852 5.56229 5.59016 5.83110 5.93126 6.02288 6.26340 6.36305 6.63533 6.82127 6.98124 7.40598 8.91599 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.021042 B = 0.002553 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.338223 B =10963.603688 C =11860.742727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.102 4.102 3 C -0.149 4.149 4 C -0.094 4.094 5 C -0.092 4.092 6 H 0.087 0.913 7 C -0.117 4.117 8 C 0.101 3.899 9 N -0.587 5.587 10 C 0.525 3.475 11 O -0.528 6.528 12 C 0.486 3.514 13 O -0.548 6.548 14 N -0.577 5.577 15 C 0.069 3.931 16 C -0.125 4.125 17 C -0.106 4.106 18 C 0.039 3.961 19 H -0.012 1.012 20 C -0.536 4.536 21 H 0.063 0.937 22 C 0.011 3.989 23 N -0.914 5.914 24 Si 0.960 3.040 25 H -0.269 1.269 26 H -0.287 1.287 27 H -0.268 1.268 28 C 0.122 3.878 29 C 0.105 3.895 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.049 0.951 35 H 0.052 0.948 36 H 0.060 0.940 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.094 0.906 40 H 0.101 0.899 41 H 0.065 0.935 42 H 0.058 0.942 43 H 0.072 0.928 44 H 0.137 0.863 45 H 0.101 0.899 46 H 0.047 0.953 47 H 0.058 0.942 48 H 0.055 0.945 49 H 0.261 0.739 50 H 0.087 0.913 51 H 0.043 0.957 52 H 0.078 0.922 53 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.674 8.953 -2.265 24.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.121 4.121 3 C -0.207 4.207 4 C -0.132 4.132 5 C -0.111 4.111 6 H 0.106 0.894 7 C -0.155 4.155 8 C -0.021 4.021 9 N -0.319 5.319 10 C 0.309 3.691 11 O -0.408 6.408 12 C 0.268 3.732 13 O -0.426 6.426 14 N -0.309 5.309 15 C -0.051 4.051 16 C -0.163 4.163 17 C -0.144 4.144 18 C 0.020 3.980 19 H 0.006 0.994 20 C -0.575 4.575 21 H 0.081 0.919 22 C -0.189 4.189 23 N -0.552 5.552 24 Si 0.785 3.215 25 H -0.194 1.194 26 H -0.213 1.213 27 H -0.192 1.192 28 C 0.001 3.999 29 C -0.015 4.015 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.093 0.907 38 H 0.101 0.899 39 H 0.113 0.887 40 H 0.119 0.881 41 H 0.083 0.917 42 H 0.076 0.924 43 H 0.090 0.910 44 H 0.154 0.846 45 H 0.119 0.881 46 H 0.066 0.934 47 H 0.076 0.924 48 H 0.074 0.926 49 H 0.071 0.929 50 H 0.105 0.895 51 H 0.062 0.938 52 H 0.097 0.903 53 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -22.667 8.839 -2.128 24.422 hybrid contribution 1.436 -0.733 0.495 1.687 sum -21.231 8.106 -1.633 22.784 Atomic orbital electron populations 1.21824 0.94577 1.01998 1.01900 1.21184 0.96221 0.96392 0.98280 1.21886 1.00815 0.96015 1.01945 1.21564 0.91475 1.01540 0.98606 1.22462 0.97875 0.98260 0.92473 0.89433 1.22847 0.94461 0.99847 0.98356 1.22274 0.99990 1.01969 0.77871 1.48417 1.16937 1.58569 1.08011 1.19733 0.84475 0.79246 0.85665 1.90423 1.78358 1.56745 1.15256 1.20404 0.85713 0.80792 0.86285 1.90729 1.81314 1.53944 1.16654 1.48443 1.17771 1.53861 1.10851 1.22931 1.01837 1.01004 0.79372 1.21917 0.94184 0.97920 1.02247 1.21552 0.97135 0.99319 0.96383 1.18817 0.92432 0.94069 0.92655 0.99402 1.21444 1.06853 1.35676 0.93514 0.91885 1.25897 0.99713 0.96901 0.96374 1.70060 1.37589 1.46774 1.00809 0.85587 0.79785 0.79289 0.76865 1.19420 1.21265 1.19250 1.21864 0.82494 0.93419 1.02168 1.22691 0.81983 0.97232 0.99641 0.92239 0.92864 0.92415 0.91702 0.93173 0.92920 0.92097 0.90728 0.89944 0.88736 0.88070 0.91678 0.92379 0.90964 0.84590 0.88097 0.93431 0.92369 0.92631 0.92944 0.89513 0.93821 0.90326 0.89823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.19 71.98 0.66 -0.68 16 2 C -0.10 -1.09 2.80 -10.80 -0.03 -1.12 16 3 C -0.15 -1.67 9.00 71.98 0.65 -1.02 16 4 C -0.09 -0.92 4.25 30.59 0.13 -0.79 16 5 C -0.09 -1.30 2.81 -9.31 -0.03 -1.33 16 6 H 0.09 1.30 6.89 -2.39 -0.02 1.29 16 7 C -0.12 -1.82 6.45 31.87 0.21 -1.61 16 8 C 0.10 2.65 5.49 86.73 0.48 3.13 16 9 N -0.59 -16.73 3.33 -813.36 -2.71 -19.44 16 10 C 0.53 18.73 7.78 87.27 0.68 19.41 16 11 O -0.53 -18.87 13.41 -3.28 -0.04 -18.91 16 12 C 0.49 21.08 7.69 87.27 0.67 21.75 16 13 O -0.55 -26.71 13.60 -3.24 -0.04 -26.75 16 14 N -0.58 -25.46 2.98 -821.33 -2.45 -27.91 16 15 C 0.07 2.50 6.01 86.36 0.52 3.02 16 16 C -0.12 -4.32 6.08 30.67 0.19 -4.13 16 17 C -0.11 -4.38 5.11 30.62 0.16 -4.22 16 18 C 0.04 2.05 2.24 -11.61 -0.03 2.03 16 19 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 20 C -0.54 -29.83 8.56 25.60 0.22 -29.61 16 21 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 22 C 0.01 0.61 5.30 84.65 0.45 1.05 16 23 N -0.91 -55.06 11.39 21.45 0.24 -54.81 16 24 Si 0.96 44.16 29.54 68.60 2.03 46.19 16 25 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 26 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 27 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 28 C 0.12 6.26 5.39 86.22 0.46 6.73 16 29 C 0.11 2.10 5.27 86.86 0.46 2.56 16 30 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.05 0.50 8.14 -2.38 -0.02 0.48 16 32 H 0.06 0.50 8.14 -2.38 -0.02 0.48 16 33 H 0.06 0.81 6.89 -2.39 -0.02 0.79 16 34 H 0.05 0.63 6.75 -2.39 -0.02 0.62 16 35 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 36 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.07 0.67 8.09 -2.38 -0.02 0.65 16 38 H 0.08 0.66 8.13 -2.39 -0.02 0.64 16 39 H 0.09 1.19 8.01 -2.39 -0.02 1.17 16 40 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16 41 H 0.06 1.92 7.56 -2.39 -0.02 1.90 16 42 H 0.06 1.77 7.73 -2.39 -0.02 1.75 16 43 H 0.07 2.43 8.14 -2.38 -0.02 2.41 16 44 H 0.14 4.77 4.25 -52.89 -0.22 4.54 16 45 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 46 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 47 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 48 H 0.05 2.21 8.14 -2.38 -0.02 2.19 16 49 H 0.26 15.13 8.31 -92.70 -0.77 14.36 16 50 H 0.09 5.15 5.11 -2.39 -0.01 5.14 16 51 H 0.04 2.22 8.14 -2.39 -0.02 2.20 16 52 H 0.08 1.64 7.76 -2.38 -0.02 1.62 16 53 H 0.08 1.51 8.04 -2.39 -0.02 1.49 16 Total: -1.00 -68.89 402.10 3.53 -65.36 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: 0.66 Total: 21.13 kcal Atomic # 6 Polarization: 9.31 SS G_CDS: 5.84 Total: 15.15 kcal Atomic # 7 Polarization: -97.25 SS G_CDS: -4.91 Total: -102.16 kcal Atomic # 8 Polarization: -45.57 SS G_CDS: -0.09 Total: -45.66 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -68.89 3.53 -65.36 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328182484.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.694 kcal (2) G-P(sol) polarization free energy of solvation -68.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds