Wall clock time and date at job start Tue Mar 31 2020 19:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47502 * 2 1 4 4 C 1.53003 * 109.46934 * 119.99808 * 2 1 3 5 5 C 1.53004 * 109.47131 * 180.43788 * 4 2 1 6 6 H 1.08999 * 110.88295 * 57.08124 * 5 4 2 7 7 C 1.55160 * 111.03582 * 180.98723 * 5 4 2 8 8 C 1.54332 * 103.01722 * 153.39752 * 7 5 4 9 9 N 1.47018 * 107.26971 * 338.14102 * 8 7 5 10 10 C 1.34780 * 125.65301 * 178.85251 * 9 8 7 11 11 O 1.21347 * 120.00275 * 179.68685 * 10 9 8 12 12 C 1.49453 * 119.99571 * 359.69141 * 10 9 8 13 13 O 1.21341 * 120.00127 * 353.40570 * 12 10 9 14 14 N 1.34775 * 119.99344 * 173.41381 * 12 10 9 15 15 C 1.46923 * 120.63503 * 352.99338 * 14 12 10 16 16 C 1.53192 * 108.77408 * 233.61047 * 15 14 12 17 17 C 1.53048 * 109.31188 * 305.36325 * 16 15 14 18 18 C 1.53034 * 109.53752 * 61.36978 * 17 16 15 19 19 H 1.08994 * 109.50010 * 58.61462 * 18 17 16 20 20 C 1.50701 * 109.49880 * 178.68138 * 18 17 16 21 21 H 1.07997 * 119.99734 * 359.72481 * 20 18 17 22 22 C 1.37874 * 120.00171 * 179.97438 * 20 18 17 23 23 N 1.31518 * 119.99846 * 0.02562 * 22 20 18 24 24 Si 1.86794 * 120.00217 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.47216 * 0.02562 * 24 22 20 26 26 H 1.48494 * 109.47336 * 120.00484 * 24 22 20 27 27 H 1.48504 * 109.47502 * 240.00561 * 24 22 20 28 28 C 1.46930 * 120.62332 * 172.99306 * 14 12 10 29 29 C 1.47425 * 108.70267 * 358.58519 * 9 8 7 30 30 H 1.08996 * 109.47146 * 64.91871 * 1 2 3 31 31 H 1.08997 * 109.47445 * 184.92286 * 1 2 3 32 32 H 1.09006 * 109.46956 * 304.91790 * 1 2 3 33 33 H 1.09000 * 109.47023 * 239.99188 * 2 1 3 34 34 H 1.08998 * 109.47202 * 179.97438 * 3 2 1 35 35 H 1.08996 * 109.46663 * 299.99824 * 3 2 1 36 36 H 1.08997 * 109.47159 * 59.99567 * 3 2 1 37 37 H 1.08999 * 109.47221 * 60.44091 * 4 2 1 38 38 H 1.09000 * 109.47608 * 300.44086 * 4 2 1 39 39 H 1.09001 * 110.71818 * 271.95235 * 7 5 4 40 40 H 1.09000 * 110.72153 * 35.05389 * 7 5 4 41 41 H 1.09001 * 109.99051 * 218.66556 * 8 7 5 42 42 H 1.09003 * 109.78166 * 97.49580 * 8 7 5 43 43 H 1.09005 * 109.58714 * 113.82210 * 15 14 12 44 44 H 1.08998 * 109.58649 * 353.39689 * 15 14 12 45 45 H 1.09004 * 109.49370 * 185.41703 * 16 15 14 46 46 H 1.08997 * 109.50198 * 65.31682 * 16 15 14 47 47 H 1.08997 * 109.45789 * 301.34551 * 17 16 15 48 48 H 1.09000 * 109.44621 * 181.37945 * 17 16 15 49 49 H 0.96998 * 120.00108 * 179.97438 * 23 22 20 50 50 H 1.08993 * 109.58856 * 6.60520 * 28 14 12 51 51 H 1.09002 * 109.58398 * 246.17300 * 28 14 12 52 52 H 1.08997 * 110.37218 * 143.19671 * 29 9 8 53 53 H 1.09005 * 110.37056 * 265.52173 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5699 -0.7117 1.2549 6 1 3.9523 0.3079 1.2070 7 6 4.1270 -1.4570 2.4965 8 6 5.5115 -1.9430 2.0181 9 7 5.4780 -1.9778 0.5487 10 6 6.5035 -2.3287 -0.2524 11 8 6.3604 -2.3265 -1.4574 12 6 7.8169 -2.7205 0.3435 13 8 7.9987 -2.6088 1.5380 14 7 8.7993 -3.1979 -0.4460 15 6 8.5474 -3.4831 -1.8651 16 6 8.9694 -4.9259 -2.1605 17 6 10.4235 -5.1266 -1.7275 18 6 10.5469 -4.8862 -0.2212 19 1 9.8905 -5.5738 0.3120 20 6 11.9726 -5.1157 0.2097 21 1 12.7159 -5.4085 -0.5170 22 6 12.3271 -4.9567 1.5326 23 7 11.4208 -4.6053 2.4185 24 14 14.0944 -5.2405 2.0666 25 1 14.9122 -5.6242 0.8879 26 1 14.6383 -3.9931 2.6609 27 1 14.1380 -6.3293 3.0755 28 6 10.1428 -3.4429 0.0962 29 6 4.1348 -1.5715 0.0967 30 1 -0.3633 0.4356 -0.9307 31 1 -0.3634 -1.0238 0.0882 32 1 -0.3633 0.5883 0.8427 33 1 1.8933 -0.5140 -0.8899 34 1 3.1301 1.4424 0.0005 35 1 1.6768 1.9562 -0.8900 36 1 1.6767 1.9563 0.8899 37 1 1.6831 -1.7511 1.2454 38 1 1.6702 -0.2120 2.1393 39 1 4.2257 -0.7767 3.3425 40 1 3.4908 -2.3031 2.7560 41 1 5.7113 -2.9410 2.4081 42 1 6.2824 -1.2499 2.3549 43 1 9.1276 -2.7987 -2.4840 44 1 7.4856 -3.3618 -2.0793 45 1 8.8779 -5.1201 -3.2292 46 1 8.3275 -5.6129 -1.6091 47 1 11.0618 -4.4225 -2.2612 48 1 10.7338 -6.1455 -1.9592 49 1 11.6700 -4.4939 3.3493 50 1 10.1335 -3.2952 1.1761 51 1 10.8531 -2.7552 -0.3628 52 1 4.2045 -0.9798 -0.8160 53 1 3.5078 -2.4483 -0.0656 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328182486.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:09 Heat of formation + Delta-G solvation = -92.154352 kcal Electronic energy + Delta-G solvation = -30440.520946 eV Core-core repulsion = 26504.018626 eV Total energy + Delta-G solvation = -3936.502320 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.06163 -40.36121 -39.06111 -38.50771 -36.88645 -35.24086 -33.53722 -32.90660 -31.61190 -30.34778 -28.28261 -27.96274 -27.12847 -26.53580 -24.66680 -23.64674 -23.08001 -21.81197 -21.21714 -20.30236 -20.04859 -18.64243 -18.22068 -17.86031 -17.53089 -16.90573 -16.71820 -16.44809 -15.71439 -15.49129 -15.30389 -15.05759 -14.91496 -14.79031 -14.65939 -14.43777 -14.29355 -13.97466 -13.83857 -13.73730 -13.50767 -13.28393 -13.02065 -12.96119 -12.90801 -12.80486 -12.46446 -12.38693 -12.31195 -12.14407 -12.09873 -11.85327 -11.73669 -11.57671 -11.34345 -11.27700 -11.16735 -11.10087 -10.98985 -10.56363 -10.16326 -9.86526 -9.53213 -8.12503 -6.29370 0.33649 1.24763 1.40526 1.41712 1.53683 2.10814 2.38322 2.44647 3.10395 3.16880 3.51429 3.60279 3.79433 4.10826 4.13483 4.15183 4.16672 4.23725 4.31576 4.32810 4.40584 4.56406 4.59353 4.60686 4.70178 4.77165 4.80087 4.85060 4.88689 4.90496 4.95911 4.97706 4.99902 5.04216 5.09680 5.14184 5.17205 5.19596 5.21108 5.24358 5.29443 5.34430 5.44143 5.48294 5.56098 5.56716 5.59203 5.82796 5.92739 6.02422 6.26402 6.36482 6.63791 6.82320 6.98263 7.40464 8.91577 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.021624 B = 0.002521 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.552756 B =11105.597756 C =12032.141903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.101 4.101 3 C -0.151 4.151 4 C -0.095 4.095 5 C -0.092 4.092 6 H 0.091 0.909 7 C -0.118 4.118 8 C 0.101 3.899 9 N -0.587 5.587 10 C 0.525 3.475 11 O -0.528 6.528 12 C 0.485 3.515 13 O -0.548 6.548 14 N -0.577 5.577 15 C 0.068 3.932 16 C -0.125 4.125 17 C -0.106 4.106 18 C 0.039 3.961 19 H -0.012 1.012 20 C -0.535 4.535 21 H 0.063 0.937 22 C 0.010 3.990 23 N -0.914 5.914 24 Si 0.960 3.040 25 H -0.262 1.262 26 H -0.281 1.281 27 H -0.282 1.282 28 C 0.122 3.878 29 C 0.105 3.895 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.050 0.950 35 H 0.052 0.948 36 H 0.060 0.940 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.102 0.898 40 H 0.092 0.908 41 H 0.059 0.941 42 H 0.064 0.936 43 H 0.072 0.928 44 H 0.139 0.861 45 H 0.101 0.899 46 H 0.047 0.953 47 H 0.058 0.942 48 H 0.055 0.945 49 H 0.261 0.739 50 H 0.086 0.914 51 H 0.044 0.956 52 H 0.079 0.921 53 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.197 9.777 -4.177 24.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.119 4.119 3 C -0.208 4.208 4 C -0.132 4.132 5 C -0.111 4.111 6 H 0.109 0.891 7 C -0.156 4.156 8 C -0.021 4.021 9 N -0.319 5.319 10 C 0.309 3.691 11 O -0.407 6.407 12 C 0.268 3.732 13 O -0.427 6.427 14 N -0.309 5.309 15 C -0.053 4.053 16 C -0.163 4.163 17 C -0.144 4.144 18 C 0.020 3.980 19 H 0.006 0.994 20 C -0.573 4.573 21 H 0.081 0.919 22 C -0.189 4.189 23 N -0.553 5.553 24 Si 0.785 3.215 25 H -0.186 1.186 26 H -0.207 1.207 27 H -0.208 1.208 28 C 0.001 3.999 29 C -0.016 4.016 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.091 0.909 38 H 0.101 0.899 39 H 0.120 0.880 40 H 0.110 0.890 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.090 0.910 44 H 0.156 0.844 45 H 0.119 0.881 46 H 0.066 0.934 47 H 0.076 0.924 48 H 0.073 0.927 49 H 0.070 0.930 50 H 0.104 0.896 51 H 0.062 0.938 52 H 0.097 0.903 53 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -22.126 9.853 -4.046 24.556 hybrid contribution 1.523 -0.345 0.643 1.689 sum -20.603 9.508 -3.403 22.944 Atomic orbital electron populations 1.21817 0.94579 1.01995 1.01902 1.21155 0.96197 0.96341 0.98239 1.21910 1.00852 0.96072 1.01949 1.21557 0.91385 1.01560 0.98730 1.22468 0.96977 0.98996 0.92691 0.89117 1.22795 0.92930 1.01421 0.98433 1.22283 0.99977 1.01919 0.77916 1.48420 1.11754 1.63132 1.08621 1.19739 0.84405 0.78808 0.86157 1.90404 1.82674 1.53724 1.13944 1.20401 0.85981 0.80108 0.86715 1.90726 1.81816 1.54774 1.15349 1.48454 1.10948 1.59711 1.11796 1.22972 1.06597 0.96645 0.79093 1.21920 0.96390 0.95739 1.02223 1.21552 0.95884 1.00809 0.96142 1.18899 0.95145 0.91242 0.92701 0.99352 1.21505 0.95133 1.46848 0.93810 0.91902 1.25897 1.01470 0.94645 0.96918 1.70074 1.34891 1.47635 1.02651 0.85476 0.80023 0.77640 0.78351 1.18618 1.20695 1.20778 1.21950 0.78703 0.98455 1.00833 1.22691 0.80428 0.99340 0.99135 0.92838 0.92422 0.92262 0.91725 0.93063 0.92914 0.92107 0.90860 0.89912 0.87989 0.88961 0.92267 0.91712 0.90961 0.84431 0.88115 0.93431 0.92375 0.92652 0.92961 0.89565 0.93762 0.90306 0.89886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.19 71.98 0.66 -0.66 16 2 C -0.10 -1.06 2.83 -10.79 -0.03 -1.09 16 3 C -0.15 -1.66 8.85 71.98 0.64 -1.02 16 4 C -0.09 -0.93 4.26 30.60 0.13 -0.80 16 5 C -0.09 -1.30 2.73 -9.40 -0.03 -1.33 16 6 H 0.09 1.31 6.37 -2.39 -0.02 1.30 16 7 C -0.12 -1.83 6.42 31.79 0.20 -1.63 16 8 C 0.10 2.65 5.51 86.73 0.48 3.13 16 9 N -0.59 -16.71 3.33 -813.34 -2.70 -19.42 16 10 C 0.53 18.71 7.79 87.27 0.68 19.39 16 11 O -0.53 -18.82 13.39 -3.24 -0.04 -18.86 16 12 C 0.49 21.05 7.70 87.27 0.67 21.72 16 13 O -0.55 -26.69 13.60 -3.22 -0.04 -26.73 16 14 N -0.58 -25.43 2.97 -820.47 -2.44 -27.87 16 15 C 0.07 2.44 6.03 86.36 0.52 2.96 16 16 C -0.12 -4.32 6.08 30.67 0.19 -4.14 16 17 C -0.11 -4.38 5.11 30.62 0.16 -4.22 16 18 C 0.04 2.04 2.25 -11.46 -0.03 2.02 16 19 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 20 C -0.53 -29.73 8.56 25.60 0.22 -29.51 16 21 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 22 C 0.01 0.57 5.30 84.65 0.45 1.02 16 23 N -0.91 -55.02 11.40 21.45 0.24 -54.77 16 24 Si 0.96 44.23 29.54 68.60 2.03 46.25 16 25 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 26 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 27 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 28 C 0.12 6.26 5.41 86.37 0.47 6.73 16 29 C 0.10 2.09 5.58 86.86 0.49 2.57 16 30 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.06 0.48 8.14 -2.38 -0.02 0.46 16 33 H 0.06 0.78 7.49 -2.39 -0.02 0.77 16 34 H 0.05 0.64 6.37 -2.39 -0.02 0.63 16 35 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.07 0.68 8.09 -2.39 -0.02 0.66 16 38 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.09 1.20 8.04 -2.39 -0.02 1.18 16 41 H 0.06 1.78 7.85 -2.39 -0.02 1.76 16 42 H 0.06 1.93 7.43 -2.39 -0.02 1.91 16 43 H 0.07 2.42 8.14 -2.38 -0.02 2.40 16 44 H 0.14 4.82 4.21 -56.51 -0.24 4.59 16 45 H 0.10 2.73 8.14 -2.38 -0.02 2.71 16 46 H 0.05 1.73 8.14 -2.39 -0.02 1.72 16 47 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 48 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 49 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 50 H 0.09 5.12 5.13 -2.39 -0.01 5.11 16 51 H 0.04 2.24 8.14 -2.39 -0.02 2.22 16 52 H 0.08 1.63 7.98 -2.39 -0.02 1.61 16 53 H 0.08 1.51 8.00 -2.38 -0.02 1.49 16 Total: -1.00 -68.92 402.13 3.55 -65.37 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: 0.64 Total: 20.88 kcal Atomic # 6 Polarization: 9.30 SS G_CDS: 5.86 Total: 15.16 kcal Atomic # 7 Polarization: -97.17 SS G_CDS: -4.90 Total: -102.06 kcal Atomic # 8 Polarization: -45.51 SS G_CDS: -0.09 Total: -45.60 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.25 kcal Total: -68.92 3.55 -65.37 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328182486.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.788 kcal (2) G-P(sol) polarization free energy of solvation -68.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds