Wall clock time and date at job start Tue Mar 31 2020 20:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50699 * 120.00304 * 2 1 4 4 C 1.52998 * 109.47621 * 239.72825 * 3 2 1 5 5 C 1.53003 * 109.46877 * 359.73119 * 3 2 1 6 6 C 1.53004 * 109.46920 * 119.72626 * 3 2 1 7 7 C 1.50703 * 109.46940 * 180.02562 * 6 3 2 8 8 O 1.21281 * 119.99997 * 359.97438 * 7 6 3 9 9 N 1.34778 * 119.99971 * 180.02562 * 7 6 3 10 10 C 1.47152 * 120.98637 * 359.71740 * 9 7 6 11 11 C 1.52835 * 108.61973 * 230.52557 * 10 9 7 12 12 O 1.42975 * 109.31408 * 307.91943 * 11 10 9 13 13 C 1.42892 * 114.20577 * 62.34376 * 12 11 10 14 14 C 1.52982 * 109.56231 * 57.46275 * 13 12 11 15 15 C 1.53195 * 109.35140 * 59.05832 * 14 13 12 16 16 N 1.46934 * 108.77649 * 54.57229 * 15 14 13 17 17 C 1.36936 * 120.64496 * 126.30380 * 16 15 14 18 18 H 1.07995 * 119.99740 * 331.86011 * 17 16 15 19 19 C 1.38808 * 119.99870 * 151.85689 * 17 16 15 20 20 N 1.31618 * 120.00080 * 343.05897 * 19 17 16 21 21 Si 1.86805 * 119.99596 * 163.05646 * 19 17 16 22 22 H 1.48493 * 109.47269 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46759 * 120.00503 * 21 19 17 24 24 H 1.48499 * 109.47057 * 240.00120 * 21 19 17 25 25 C 1.46931 * 118.71006 * 306.32513 * 16 15 14 26 26 C 1.52993 * 109.55232 * 177.77260 * 13 12 11 27 27 C 1.47154 * 120.98825 * 179.97438 * 9 7 6 28 28 H 1.07998 * 119.99645 * 359.97438 * 1 2 3 29 29 H 1.07996 * 119.99814 * 179.97438 * 1 2 3 30 30 H 1.08002 * 120.00131 * 179.73215 * 2 1 3 31 31 H 1.08998 * 109.46925 * 59.99666 * 4 3 2 32 32 H 1.08995 * 109.47460 * 180.02562 * 4 3 2 33 33 H 1.09008 * 109.47194 * 299.99904 * 4 3 2 34 34 H 1.08991 * 109.47189 * 59.99778 * 5 3 2 35 35 H 1.09004 * 109.46759 * 179.97438 * 5 3 2 36 36 H 1.09003 * 109.46685 * 299.99092 * 5 3 2 37 37 H 1.09002 * 109.47310 * 299.99856 * 6 3 2 38 38 H 1.08998 * 109.46951 * 60.00558 * 6 3 2 39 39 H 1.08999 * 109.68498 * 350.30631 * 10 9 7 40 40 H 1.09003 * 109.68465 * 110.86674 * 10 9 7 41 41 H 1.08997 * 109.59113 * 187.89912 * 11 10 9 42 42 H 1.08999 * 109.39685 * 67.82472 * 11 10 9 43 43 H 1.09011 * 109.48783 * 179.01701 * 14 13 12 44 44 H 1.08997 * 109.49416 * 299.08658 * 14 13 12 45 45 H 1.08997 * 109.58379 * 294.78192 * 15 14 13 46 46 H 1.08999 * 109.70388 * 174.43149 * 15 14 13 47 47 H 0.97005 * 119.99408 * 179.97438 * 20 19 17 48 48 H 1.08993 * 109.58792 * 293.88629 * 25 16 15 49 49 H 1.09002 * 109.70024 * 173.53069 * 25 16 15 50 50 H 1.09002 * 109.49492 * 60.89906 * 26 13 12 51 51 H 1.08997 * 109.49214 * 180.94866 * 26 13 12 52 52 H 1.08993 * 109.68056 * 249.25189 * 27 9 7 53 53 H 1.09005 * 109.67511 * 9.76015 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.9483 1.3832 -1.2458 5 6 1.0693 2.4680 -0.0068 6 6 2.9380 1.3890 1.2527 7 6 3.6911 2.6944 1.2530 8 8 3.5434 3.4799 0.3409 9 7 4.5296 2.9883 2.2664 10 6 4.7214 2.0534 3.3865 11 6 4.5417 2.8187 4.6972 12 8 5.3792 3.9774 4.6869 13 6 5.0674 4.9166 3.6561 14 6 3.6089 5.3585 3.7898 15 6 3.3950 5.9931 5.1676 16 7 4.3730 7.0749 5.3470 17 6 3.9635 8.3368 5.6864 18 1 2.9821 8.6821 5.3969 19 6 4.8099 9.1719 6.4025 20 7 5.8464 8.6694 7.0393 21 14 4.4779 11.0093 6.4624 22 1 3.2602 11.3183 5.6707 23 1 4.2713 11.4292 7.8717 24 1 5.6380 11.7408 5.8929 25 6 5.7988 6.7765 5.1548 26 6 5.9866 6.1336 3.7771 27 6 5.2762 4.2562 2.2885 28 1 -0.5399 0.9353 0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 1.8500 -0.9353 0.0044 31 1 2.3254 1.3234 -2.1382 32 1 3.4937 2.3269 -1.2455 33 1 3.6567 0.5547 -1.2409 34 1 0.4391 2.4123 0.8807 35 1 1.6144 3.4120 -0.0063 36 1 0.4464 2.4082 -0.8993 37 1 2.3077 1.3334 2.1403 38 1 3.6463 0.5605 1.2575 39 1 3.9846 1.2525 3.3265 40 1 5.7261 1.6326 3.3455 41 1 4.8168 2.1782 5.5351 42 1 3.5000 3.1233 4.7985 43 1 3.3774 6.0880 3.0135 44 1 2.9553 4.4929 3.6825 45 1 3.5369 5.2399 5.9427 46 1 2.3854 6.3986 5.2327 47 1 6.4380 9.2532 7.5394 48 1 6.1354 6.0870 5.9288 49 1 6.3778 7.6984 5.2098 50 1 7.0238 5.8191 3.6609 51 1 5.7367 6.8567 3.0007 52 1 6.3371 4.0602 2.1334 53 1 4.9057 4.9140 1.5022 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328480928.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:28 Heat of formation + Delta-G solvation = -29.256276 kcal Electronic energy + Delta-G solvation = -31555.096385 eV Core-core repulsion = 27621.321530 eV Total energy + Delta-G solvation = -3933.774854 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.87003 -39.39817 -37.23001 -36.18252 -34.58872 -33.04240 -31.60631 -31.11559 -29.83884 -28.97085 -28.59599 -27.38782 -26.32915 -24.21575 -23.47467 -22.65466 -22.14393 -20.89323 -19.12254 -18.90489 -18.32676 -17.42899 -16.90262 -16.12150 -15.79300 -15.65285 -15.28591 -15.00237 -14.73992 -14.59043 -14.29758 -14.12293 -13.81946 -13.59114 -13.42952 -13.28498 -13.04045 -12.84703 -12.42968 -12.22283 -11.97538 -11.90365 -11.72722 -11.58031 -11.38817 -11.33572 -11.25130 -11.06324 -11.02372 -10.82020 -10.81679 -10.64527 -10.34373 -10.24448 -9.99528 -9.84580 -9.63571 -9.59252 -9.43977 -9.30833 -8.42722 -8.38792 -6.61158 -5.74753 -3.17041 2.02299 2.54947 2.86285 3.39220 3.47224 3.49581 3.98920 4.28117 4.51727 4.52834 4.68637 4.75979 4.79813 4.89193 5.02748 5.09131 5.13011 5.14411 5.29453 5.30743 5.38936 5.42375 5.43289 5.55821 5.57295 5.66364 5.67946 5.69779 5.79937 5.85038 5.86840 5.90308 5.97053 6.05854 6.23436 6.29308 6.31483 6.33123 6.35744 6.47127 6.54555 6.57163 6.57881 6.69180 6.76466 7.02282 7.32367 7.43022 7.57622 7.76365 7.83694 8.12973 8.49211 9.25956 9.89333 10.47244 11.33548 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.020507 B = 0.002834 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.044907 B = 9876.131047 C =10328.577730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.146 4.146 3 C -0.019 4.019 4 C -0.149 4.149 5 C -0.157 4.157 6 C -0.127 4.127 7 C 0.517 3.483 8 O -0.531 6.531 9 N -0.611 5.611 10 C 0.072 3.928 11 C 0.043 3.957 12 O -0.356 6.356 13 C 0.118 3.882 14 C -0.151 4.151 15 C 0.153 3.847 16 N -0.591 5.591 17 C -0.251 4.251 18 H 0.064 0.936 19 C 0.002 3.998 20 N -0.901 5.901 21 Si 0.900 3.100 22 H -0.278 1.278 23 H -0.291 1.291 24 H -0.289 1.289 25 C 0.178 3.822 26 C -0.127 4.127 27 C 0.089 3.911 28 H 0.104 0.896 29 H 0.094 0.906 30 H 0.106 0.894 31 H 0.051 0.949 32 H 0.087 0.913 33 H 0.046 0.954 34 H 0.049 0.951 35 H 0.087 0.913 36 H 0.053 0.947 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.089 0.911 40 H 0.075 0.925 41 H 0.101 0.899 42 H 0.059 0.941 43 H 0.067 0.933 44 H 0.050 0.950 45 H 0.020 0.980 46 H 0.050 0.950 47 H 0.253 0.747 48 H 0.027 0.973 49 H 0.086 0.914 50 H 0.057 0.943 51 H 0.070 0.930 52 H 0.070 0.930 53 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.630 -19.476 -11.802 23.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.164 4.164 3 C -0.020 4.020 4 C -0.206 4.206 5 C -0.213 4.213 6 C -0.167 4.167 7 C 0.306 3.694 8 O -0.409 6.409 9 N -0.344 5.344 10 C -0.051 4.051 11 C -0.035 4.035 12 O -0.274 6.274 13 C 0.078 3.922 14 C -0.190 4.190 15 C 0.026 3.974 16 N -0.313 5.313 17 C -0.381 4.381 18 H 0.082 0.918 19 C -0.197 4.197 20 N -0.546 5.546 21 Si 0.730 3.270 22 H -0.203 1.203 23 H -0.218 1.218 24 H -0.216 1.216 25 C 0.052 3.948 26 C -0.166 4.166 27 C -0.034 4.034 28 H 0.123 0.877 29 H 0.112 0.888 30 H 0.124 0.876 31 H 0.070 0.930 32 H 0.106 0.894 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.106 0.894 36 H 0.072 0.928 37 H 0.111 0.889 38 H 0.110 0.890 39 H 0.107 0.893 40 H 0.094 0.906 41 H 0.119 0.881 42 H 0.077 0.923 43 H 0.086 0.914 44 H 0.069 0.931 45 H 0.038 0.962 46 H 0.068 0.932 47 H 0.063 0.937 48 H 0.045 0.955 49 H 0.104 0.896 50 H 0.076 0.924 51 H 0.088 0.912 52 H 0.088 0.912 53 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.450 -18.921 -12.050 22.869 hybrid contribution -0.320 0.537 0.016 0.626 sum -4.770 -18.384 -12.034 22.484 Atomic orbital electron populations 1.24032 0.96191 1.02110 1.00903 1.22939 0.95938 0.97526 0.99979 1.19377 0.94954 0.93309 0.94353 1.22048 0.99150 1.03507 0.95861 1.22188 0.98545 0.99699 1.00901 1.21733 0.99168 0.95737 1.00083 1.20594 0.78909 0.88535 0.81331 1.90572 1.64297 1.50835 1.35174 1.48192 1.44183 1.19928 1.22144 1.22398 1.02723 0.92637 0.87338 1.22810 0.96411 0.88226 0.96086 1.88084 1.56256 1.30089 1.52997 1.21768 0.96332 0.89121 0.84983 1.22502 0.94995 0.99845 1.01693 1.20765 0.93544 0.90982 0.92120 1.44036 1.01298 1.05711 1.80286 1.19215 1.01580 0.88954 1.28321 0.91795 1.25041 0.98982 0.98702 0.96937 1.70053 1.17595 1.33530 1.33376 0.86255 0.77647 0.85809 0.77271 1.20298 1.21781 1.21565 1.20673 0.85624 0.98984 0.89484 1.22201 0.96938 0.94152 1.03328 1.22475 0.95945 0.85151 0.99810 0.87742 0.88759 0.87594 0.93001 0.89429 0.93531 0.93183 0.89396 0.92811 0.88926 0.89012 0.89266 0.90629 0.88121 0.92331 0.91439 0.93145 0.96204 0.93165 0.93732 0.95451 0.89567 0.92389 0.91171 0.91209 0.88364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.51 13.70 29.01 0.40 -1.11 16 2 C -0.15 -1.17 8.76 -36.03 -0.32 -1.49 16 3 C -0.02 -0.18 0.74 -155.66 -0.11 -0.30 16 4 C -0.15 -1.50 8.16 37.16 0.30 -1.20 16 5 C -0.16 -1.67 6.83 37.16 0.25 -1.41 16 6 C -0.13 -1.16 3.13 -27.88 -0.09 -1.24 16 7 C 0.52 6.39 7.12 -10.98 -0.08 6.31 16 8 O -0.53 -8.05 10.82 5.56 0.06 -7.99 16 9 N -0.61 -7.56 2.53 -172.56 -0.44 -7.99 16 10 C 0.07 0.71 6.51 -3.77 -0.02 0.69 16 11 C 0.04 0.52 6.58 37.07 0.24 0.77 16 12 O -0.36 -5.97 9.00 -35.23 -0.32 -6.29 16 13 C 0.12 1.99 0.68 -90.48 -0.06 1.93 16 14 C -0.15 -2.70 4.33 -26.64 -0.12 -2.81 16 15 C 0.15 3.27 6.28 -3.70 -0.02 3.24 16 16 N -0.59 -14.95 2.99 -172.32 -0.52 -15.46 16 17 C -0.25 -6.95 9.58 -15.06 -0.14 -7.10 16 18 H 0.06 1.75 7.88 -52.49 -0.41 1.34 16 19 C 0.00 0.05 4.92 -17.43 -0.09 -0.03 16 20 N -0.90 -26.32 11.19 55.49 0.62 -25.70 16 21 Si 0.90 21.84 29.59 -169.99 -5.03 16.81 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 C 0.18 4.29 5.07 -3.71 -0.02 4.27 16 26 C -0.13 -2.42 5.10 -26.64 -0.14 -2.55 16 27 C 0.09 1.29 5.30 -3.53 -0.02 1.27 16 28 H 0.10 0.83 5.69 -52.49 -0.30 0.53 16 29 H 0.09 0.61 8.06 -52.49 -0.42 0.18 16 30 H 0.11 0.73 8.06 -52.49 -0.42 0.30 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.09 1.09 5.51 -51.93 -0.29 0.80 16 33 H 0.05 0.41 8.14 -51.92 -0.42 -0.01 16 34 H 0.05 0.50 7.48 -51.93 -0.39 0.11 16 35 H 0.09 1.16 5.51 -51.93 -0.29 0.88 16 36 H 0.05 0.53 7.51 -51.93 -0.39 0.14 16 37 H 0.09 0.75 7.65 -51.93 -0.40 0.36 16 38 H 0.09 0.67 8.02 -51.93 -0.42 0.25 16 39 H 0.09 0.62 6.06 -51.93 -0.31 0.31 16 40 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.06 0.75 6.29 -51.93 -0.33 0.42 16 43 H 0.07 1.28 8.14 -51.92 -0.42 0.86 16 44 H 0.05 0.82 6.15 -51.93 -0.32 0.50 16 45 H 0.02 0.44 7.83 -51.93 -0.41 0.03 16 46 H 0.05 1.07 7.93 -51.93 -0.41 0.66 16 47 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 48 H 0.03 0.71 7.83 -51.93 -0.41 0.30 16 49 H 0.09 2.31 6.06 -51.93 -0.31 2.00 16 50 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 51 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 52 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 53 H 0.10 1.55 7.08 -51.93 -0.37 1.18 16 LS Contribution 390.27 15.07 5.88 5.88 Total: -1.00 -31.27 390.27 -8.87 -40.13 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -9.11 Total: 1.39 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: -0.03 Total: -0.78 kcal Atomic # 7 Polarization: -48.82 SS G_CDS: -0.33 Total: -49.15 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: -0.26 Total: -14.28 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.81 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.27 -8.87 -40.13 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328480928.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.878 kcal (2) G-P(sol) polarization free energy of solvation -31.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds