Wall clock time and date at job start Tue Mar 31 2020 20:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50699 * 120.00304 * 2 1 4 4 C 1.52998 * 109.47621 * 239.72825 * 3 2 1 5 5 C 1.53003 * 109.46877 * 359.73119 * 3 2 1 6 6 C 1.53004 * 109.46920 * 119.72626 * 3 2 1 7 7 C 1.50703 * 109.46940 * 180.02562 * 6 3 2 8 8 O 1.21281 * 119.99997 * 359.97438 * 7 6 3 9 9 N 1.34778 * 119.99971 * 180.02562 * 7 6 3 10 10 C 1.47152 * 120.98637 * 359.71740 * 9 7 6 11 11 C 1.52835 * 108.61973 * 230.52557 * 10 9 7 12 12 O 1.42975 * 109.31408 * 307.91943 * 11 10 9 13 13 C 1.42892 * 114.20577 * 62.34376 * 12 11 10 14 14 C 1.52982 * 109.56231 * 57.46275 * 13 12 11 15 15 C 1.53195 * 109.35140 * 59.05832 * 14 13 12 16 16 N 1.46934 * 108.77649 * 54.57229 * 15 14 13 17 17 C 1.36936 * 120.64496 * 126.30380 * 16 15 14 18 18 H 1.07995 * 119.99740 * 331.86011 * 17 16 15 19 19 C 1.38808 * 119.99870 * 151.85689 * 17 16 15 20 20 N 1.31618 * 120.00080 * 343.05897 * 19 17 16 21 21 Si 1.86805 * 119.99596 * 163.05646 * 19 17 16 22 22 H 1.48493 * 109.47269 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46759 * 120.00503 * 21 19 17 24 24 H 1.48499 * 109.47057 * 240.00120 * 21 19 17 25 25 C 1.46931 * 118.71006 * 306.32513 * 16 15 14 26 26 C 1.52993 * 109.55232 * 177.77260 * 13 12 11 27 27 C 1.47154 * 120.98825 * 179.97438 * 9 7 6 28 28 H 1.07998 * 119.99645 * 359.97438 * 1 2 3 29 29 H 1.07996 * 119.99814 * 179.97438 * 1 2 3 30 30 H 1.08002 * 120.00131 * 179.73215 * 2 1 3 31 31 H 1.08998 * 109.46925 * 59.99666 * 4 3 2 32 32 H 1.08995 * 109.47460 * 180.02562 * 4 3 2 33 33 H 1.09008 * 109.47194 * 299.99904 * 4 3 2 34 34 H 1.08991 * 109.47189 * 59.99778 * 5 3 2 35 35 H 1.09004 * 109.46759 * 179.97438 * 5 3 2 36 36 H 1.09003 * 109.46685 * 299.99092 * 5 3 2 37 37 H 1.09002 * 109.47310 * 299.99856 * 6 3 2 38 38 H 1.08998 * 109.46951 * 60.00558 * 6 3 2 39 39 H 1.08999 * 109.68498 * 350.30631 * 10 9 7 40 40 H 1.09003 * 109.68465 * 110.86674 * 10 9 7 41 41 H 1.08997 * 109.59113 * 187.89912 * 11 10 9 42 42 H 1.08999 * 109.39685 * 67.82472 * 11 10 9 43 43 H 1.09011 * 109.48783 * 179.01701 * 14 13 12 44 44 H 1.08997 * 109.49416 * 299.08658 * 14 13 12 45 45 H 1.08997 * 109.58379 * 294.78192 * 15 14 13 46 46 H 1.08999 * 109.70388 * 174.43149 * 15 14 13 47 47 H 0.97005 * 119.99408 * 179.97438 * 20 19 17 48 48 H 1.08993 * 109.58792 * 293.88629 * 25 16 15 49 49 H 1.09002 * 109.70024 * 173.53069 * 25 16 15 50 50 H 1.09002 * 109.49492 * 60.89906 * 26 13 12 51 51 H 1.08997 * 109.49214 * 180.94866 * 26 13 12 52 52 H 1.08993 * 109.68056 * 249.25189 * 27 9 7 53 53 H 1.09005 * 109.67511 * 9.76015 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.9483 1.3832 -1.2458 5 6 1.0693 2.4680 -0.0068 6 6 2.9380 1.3890 1.2527 7 6 3.6911 2.6944 1.2530 8 8 3.5434 3.4799 0.3409 9 7 4.5296 2.9883 2.2664 10 6 4.7214 2.0534 3.3865 11 6 4.5417 2.8187 4.6972 12 8 5.3792 3.9774 4.6869 13 6 5.0674 4.9166 3.6561 14 6 3.6089 5.3585 3.7898 15 6 3.3950 5.9931 5.1676 16 7 4.3730 7.0749 5.3470 17 6 3.9635 8.3368 5.6864 18 1 2.9821 8.6821 5.3969 19 6 4.8099 9.1719 6.4025 20 7 5.8464 8.6694 7.0393 21 14 4.4779 11.0093 6.4624 22 1 3.2602 11.3183 5.6707 23 1 4.2713 11.4292 7.8717 24 1 5.6380 11.7408 5.8929 25 6 5.7988 6.7765 5.1548 26 6 5.9866 6.1336 3.7771 27 6 5.2762 4.2562 2.2885 28 1 -0.5399 0.9353 0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 1.8500 -0.9353 0.0044 31 1 2.3254 1.3234 -2.1382 32 1 3.4937 2.3269 -1.2455 33 1 3.6567 0.5547 -1.2409 34 1 0.4391 2.4123 0.8807 35 1 1.6144 3.4120 -0.0063 36 1 0.4464 2.4082 -0.8993 37 1 2.3077 1.3334 2.1403 38 1 3.6463 0.5605 1.2575 39 1 3.9846 1.2525 3.3265 40 1 5.7261 1.6326 3.3455 41 1 4.8168 2.1782 5.5351 42 1 3.5000 3.1233 4.7985 43 1 3.3774 6.0880 3.0135 44 1 2.9553 4.4929 3.6825 45 1 3.5369 5.2399 5.9427 46 1 2.3854 6.3986 5.2327 47 1 6.4380 9.2532 7.5394 48 1 6.1354 6.0870 5.9288 49 1 6.3778 7.6984 5.2098 50 1 7.0238 5.8191 3.6609 51 1 5.7367 6.8567 3.0007 52 1 6.3371 4.0602 2.1334 53 1 4.9057 4.9140 1.5022 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328480928.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:27 Heat of formation + Delta-G solvation = -46.922848 kcal Electronic energy + Delta-G solvation = -31555.862465 eV Core-core repulsion = 27621.321530 eV Total energy + Delta-G solvation = -3934.540934 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.92173 -40.51295 -38.20668 -37.62312 -35.72529 -34.68127 -33.00259 -32.14534 -31.52266 -30.08005 -29.70974 -28.18403 -27.68276 -25.83844 -24.66265 -23.80474 -23.46470 -22.34427 -20.54965 -19.92661 -19.02605 -18.86711 -18.24974 -17.19502 -16.92271 -16.78563 -16.51665 -16.34145 -15.99969 -15.88064 -15.25822 -15.23611 -15.17670 -14.93890 -14.84443 -14.64399 -14.30455 -13.82831 -13.62284 -13.27829 -13.17101 -13.12870 -13.02961 -12.86643 -12.73277 -12.65992 -12.64664 -12.28658 -12.23627 -12.08194 -11.97549 -11.87398 -11.78423 -11.72228 -11.50769 -11.43765 -11.16997 -10.77926 -10.54543 -10.41806 -10.21028 -9.45611 -8.67021 -7.87447 -5.33296 1.43833 1.45000 1.46818 1.57557 1.64692 1.94267 2.50300 2.82851 3.26785 3.47683 3.61707 3.76376 3.80639 3.83727 3.93411 3.98619 4.04331 4.14231 4.22815 4.32814 4.39461 4.41788 4.48375 4.51386 4.62954 4.64453 4.70062 4.70486 4.75328 4.79264 4.85015 4.90425 4.93236 4.97996 4.99435 5.05951 5.07409 5.12663 5.13835 5.20581 5.29069 5.38294 5.45818 5.48184 5.59379 5.63852 5.79402 5.80407 5.99127 6.36642 6.38945 6.42602 7.14824 7.21472 7.85690 8.38755 9.18845 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.020507 B = 0.002834 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.044907 B = 9876.131047 C =10328.577730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.147 4.147 3 C -0.019 4.019 4 C -0.146 4.146 5 C -0.154 4.154 6 C -0.122 4.122 7 C 0.512 3.488 8 O -0.564 6.564 9 N -0.613 5.613 10 C 0.076 3.924 11 C 0.033 3.967 12 O -0.382 6.382 13 C 0.126 3.874 14 C -0.135 4.135 15 C 0.153 3.847 16 N -0.609 5.609 17 C -0.264 4.264 18 H 0.063 0.937 19 C -0.049 4.049 20 N -0.932 5.932 21 Si 0.966 3.034 22 H -0.269 1.269 23 H -0.291 1.291 24 H -0.288 1.288 25 C 0.189 3.811 26 C -0.119 4.119 27 C 0.099 3.901 28 H 0.097 0.903 29 H 0.109 0.891 30 H 0.125 0.875 31 H 0.050 0.950 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.054 0.946 35 H 0.059 0.941 36 H 0.054 0.946 37 H 0.110 0.890 38 H 0.120 0.880 39 H 0.127 0.873 40 H 0.090 0.910 41 H 0.124 0.876 42 H 0.051 0.949 43 H 0.053 0.947 44 H 0.072 0.928 45 H 0.016 0.984 46 H 0.046 0.954 47 H 0.250 0.750 48 H 0.000 1.000 49 H 0.052 0.948 50 H 0.075 0.925 51 H 0.066 0.934 52 H 0.079 0.921 53 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.388 -22.259 -12.595 26.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.165 4.165 3 C -0.020 4.020 4 C -0.203 4.203 5 C -0.211 4.211 6 C -0.161 4.161 7 C 0.303 3.697 8 O -0.443 6.443 9 N -0.347 5.347 10 C -0.045 4.045 11 C -0.044 4.044 12 O -0.301 6.301 13 C 0.086 3.914 14 C -0.174 4.174 15 C 0.027 3.973 16 N -0.332 5.332 17 C -0.395 4.395 18 H 0.080 0.920 19 C -0.245 4.245 20 N -0.578 5.578 21 Si 0.794 3.206 22 H -0.193 1.193 23 H -0.218 1.218 24 H -0.215 1.215 25 C 0.064 3.936 26 C -0.158 4.158 27 C -0.024 4.024 28 H 0.115 0.885 29 H 0.127 0.873 30 H 0.143 0.857 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.128 0.872 38 H 0.138 0.862 39 H 0.145 0.855 40 H 0.108 0.892 41 H 0.142 0.858 42 H 0.070 0.930 43 H 0.072 0.928 44 H 0.090 0.910 45 H 0.033 0.967 46 H 0.064 0.936 47 H 0.059 0.941 48 H 0.018 0.982 49 H 0.070 0.930 50 H 0.093 0.907 51 H 0.085 0.915 52 H 0.097 0.903 53 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.229 -21.743 -12.850 25.792 hybrid contribution -0.142 1.361 0.294 1.399 sum -5.371 -20.383 -12.556 24.535 Atomic orbital electron populations 1.24153 0.96313 1.02543 1.00371 1.22928 0.95934 0.97198 1.00401 1.19361 0.94697 0.93612 0.94323 1.21982 0.99327 1.02609 0.96352 1.22133 0.98681 0.99074 1.01190 1.21794 0.99457 0.94400 1.00446 1.21258 0.78493 0.89373 0.80619 1.90586 1.65137 1.52146 1.36473 1.48287 1.43939 1.19387 1.23067 1.22562 1.04904 0.92362 0.84721 1.23128 0.95376 0.87227 0.98649 1.88046 1.57474 1.31492 1.53058 1.21496 0.94426 0.88759 0.86713 1.22295 0.96617 0.99896 0.98626 1.20840 0.92448 0.89964 0.94058 1.44291 1.02313 1.06085 1.80526 1.19509 1.01633 0.90331 1.27983 0.91973 1.25793 0.99008 1.02746 0.96906 1.70204 1.18544 1.34781 1.34298 0.85229 0.77647 0.80635 0.77061 1.19307 1.21772 1.21483 1.20385 0.84725 0.96966 0.91544 1.22010 0.98847 0.95177 0.99783 1.22116 0.96802 0.86195 0.97283 0.88512 0.87256 0.85711 0.93136 0.92058 0.92072 0.92728 0.92262 0.92727 0.87231 0.86154 0.85533 0.89163 0.85805 0.93037 0.92790 0.91002 0.96652 0.93572 0.94051 0.98159 0.92971 0.90658 0.91496 0.90273 0.89921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.47 13.70 67.78 0.93 -1.54 16 2 C -0.15 -1.85 8.76 25.65 0.22 -1.62 16 3 C -0.02 -0.32 0.74 -52.93 -0.04 -0.36 16 4 C -0.15 -2.69 8.16 71.98 0.59 -2.10 16 5 C -0.15 -3.12 6.83 71.98 0.49 -2.63 16 6 C -0.12 -1.76 3.13 29.85 0.09 -1.66 16 7 C 0.51 11.53 7.12 87.66 0.62 12.15 16 8 O -0.56 -16.82 10.82 -3.03 -0.03 -16.85 16 9 N -0.61 -13.60 2.53 -818.23 -2.07 -15.67 16 10 C 0.08 1.20 6.51 86.20 0.56 1.76 16 11 C 0.03 0.72 6.58 71.93 0.47 1.19 16 12 O -0.38 -12.36 9.00 -148.98 -1.34 -13.70 16 13 C 0.13 4.18 0.68 -10.70 -0.01 4.18 16 14 C -0.14 -4.80 4.33 30.65 0.13 -4.66 16 15 C 0.15 6.63 6.28 86.36 0.54 7.17 16 16 N -0.61 -31.74 2.99 -699.08 -2.09 -33.83 16 17 C -0.26 -15.02 9.58 84.03 0.81 -14.22 16 18 H 0.06 3.48 7.88 -2.91 -0.02 3.45 16 19 C -0.05 -2.80 4.92 84.86 0.42 -2.38 16 20 N -0.93 -56.25 11.19 21.65 0.24 -56.01 16 21 Si 0.97 45.81 29.59 68.60 2.03 47.84 16 22 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 23 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 24 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 25 C 0.19 9.48 5.07 86.36 0.44 9.91 16 26 C -0.12 -4.61 5.10 30.66 0.16 -4.45 16 27 C 0.10 2.77 5.30 86.35 0.46 3.23 16 28 H 0.10 1.35 5.69 -2.91 -0.02 1.33 16 29 H 0.11 1.04 8.06 -2.91 -0.02 1.02 16 30 H 0.13 1.14 8.06 -2.91 -0.02 1.12 16 31 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.06 1.49 5.51 -2.39 -0.01 1.48 16 33 H 0.06 0.92 8.14 -2.38 -0.02 0.91 16 34 H 0.05 1.02 7.48 -2.39 -0.02 1.00 16 35 H 0.06 1.57 5.51 -2.38 -0.01 1.56 16 36 H 0.05 1.05 7.51 -2.39 -0.02 1.03 16 37 H 0.11 1.27 7.65 -2.39 -0.02 1.25 16 38 H 0.12 1.11 8.02 -2.39 -0.02 1.09 16 39 H 0.13 1.06 6.06 -2.39 -0.01 1.05 16 40 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 42 H 0.05 1.19 6.29 -2.39 -0.02 1.17 16 43 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 44 H 0.07 2.23 6.15 -2.39 -0.01 2.22 16 45 H 0.02 0.69 7.83 -2.39 -0.02 0.67 16 46 H 0.05 1.99 7.93 -2.39 -0.02 1.97 16 47 H 0.25 14.53 8.31 -92.70 -0.77 13.76 16 48 H 0.00 0.02 7.83 -2.39 -0.02 0.00 16 49 H 0.05 2.94 6.06 -2.39 -0.01 2.92 16 50 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 51 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 52 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 53 H 0.08 2.58 7.08 -2.38 -0.02 2.57 16 Total: -1.00 -71.03 390.27 4.50 -66.53 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: 0.88 Total: 17.73 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: 6.89 Total: 3.96 kcal Atomic # 7 Polarization: -101.59 SS G_CDS: -3.92 Total: -105.51 kcal Atomic # 8 Polarization: -29.18 SS G_CDS: -1.37 Total: -30.55 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -71.03 4.50 -66.53 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328480928.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.607 kcal (2) G-P(sol) polarization free energy of solvation -71.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds