Wall clock time and date at job start Tue Mar 31 2020 19:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46823 * 2 1 4 4 C 1.53003 * 109.47207 * 119.99396 * 2 1 3 5 5 C 1.53001 * 109.47401 * 239.99691 * 2 1 3 6 6 H 1.08996 * 110.88515 * 298.49065 * 5 2 1 7 7 C 1.55159 * 111.00171 * 174.56713 * 5 2 1 8 8 C 1.54318 * 102.93975 * 206.42472 * 7 5 2 9 9 N 1.47024 * 107.27513 * 22.19395 * 8 7 5 10 10 C 1.34780 * 125.65032 * 181.09217 * 9 8 7 11 11 O 1.21348 * 119.99516 * 179.97438 * 10 9 8 12 12 C 1.49448 * 119.99978 * 359.96303 * 10 9 8 13 13 O 1.21351 * 119.99852 * 6.40348 * 12 10 9 14 14 N 1.34774 * 119.99738 * 186.40850 * 12 10 9 15 15 C 1.46923 * 120.63250 * 357.11972 * 14 12 10 16 16 C 1.53626 * 108.54441 * 126.37024 * 15 14 12 17 17 C 1.53043 * 109.24078 * 54.85663 * 16 15 14 18 18 C 1.53042 * 109.53923 * 298.51612 * 17 16 15 19 19 H 1.09004 * 109.49783 * 301.41082 * 18 17 16 20 20 C 1.50695 * 109.49815 * 181.31298 * 18 17 16 21 21 H 1.08006 * 120.00402 * 0.16310 * 20 18 17 22 22 C 1.37882 * 120.00323 * 180.15664 * 20 18 17 23 23 N 1.31519 * 119.99621 * 0.02562 * 22 20 18 24 24 Si 1.86794 * 120.00266 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47193 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46753 * 120.00350 * 24 22 20 27 27 H 1.48498 * 109.47398 * 240.00340 * 24 22 20 28 28 C 1.46923 * 120.63086 * 177.40674 * 14 12 10 29 29 C 1.47428 * 108.69905 * 1.05861 * 9 8 7 30 30 H 1.09005 * 109.46376 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.46914 * 60.00390 * 1 2 3 32 32 H 1.08994 * 109.47048 * 299.99874 * 1 2 3 33 33 H 1.08998 * 109.47317 * 58.02939 * 3 2 1 34 34 H 1.08998 * 109.47199 * 178.03757 * 3 2 1 35 35 H 1.08999 * 109.46812 * 298.03197 * 3 2 1 36 36 H 1.09005 * 109.46940 * 60.00380 * 4 2 1 37 37 H 1.08995 * 109.47211 * 180.02562 * 4 2 1 38 38 H 1.08997 * 109.47041 * 300.00621 * 4 2 1 39 39 H 1.08997 * 110.72186 * 324.78942 * 7 5 2 40 40 H 1.09000 * 110.71483 * 88.06362 * 7 5 2 41 41 H 1.09002 * 109.88269 * 262.77594 * 8 7 5 42 42 H 1.08997 * 109.88211 * 141.61377 * 8 7 5 43 43 H 1.08997 * 109.59184 * 246.20771 * 15 14 12 44 44 H 1.09006 * 109.58680 * 6.63650 * 15 14 12 45 45 H 1.09003 * 109.63411 * 294.87334 * 16 15 14 46 46 H 1.08995 * 109.43719 * 174.72987 * 16 15 14 47 47 H 1.08990 * 109.46139 * 178.49213 * 17 16 15 48 48 H 1.09004 * 109.44828 * 58.52295 * 17 16 15 49 49 H 0.96996 * 119.99492 * 179.97438 * 23 22 20 50 50 H 1.08998 * 109.58522 * 353.37191 * 28 14 12 51 51 H 1.08996 * 109.59129 * 113.64963 * 28 14 12 52 52 H 1.09001 * 110.36754 * 217.03035 * 29 9 8 53 53 H 1.09003 * 110.36209 * 94.71290 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7211 1.2493 5 6 2.0401 -0.7213 -1.2492 6 1 1.7117 -1.7606 -1.2591 7 6 3.5850 -0.6243 -1.3555 8 6 3.8355 -0.7487 -2.8731 9 7 2.5903 -0.3646 -3.5540 10 6 2.3931 -0.3606 -4.8873 11 8 1.3192 -0.0236 -5.3407 12 6 3.4972 -0.7711 -5.8072 13 8 4.5302 -1.2179 -5.3537 14 7 3.3454 -0.6448 -7.1404 15 6 2.0779 -0.1647 -7.7074 16 6 2.3759 1.0259 -8.6315 17 6 3.4124 0.6062 -9.6763 18 6 4.7120 0.2039 -8.9752 19 1 5.0813 1.0423 -8.3846 20 6 5.7423 -0.1783 -10.0064 21 1 5.4963 -0.1360 -11.0572 22 6 6.9992 -0.5821 -9.6084 23 7 7.2987 -0.6340 -8.3289 24 14 8.2761 -1.0565 -10.8866 25 1 7.6936 -0.9136 -12.2450 26 1 9.4582 -0.1667 -10.7592 27 1 8.6919 -2.4658 -10.6716 28 6 4.4422 -0.9906 -8.0547 29 6 1.5930 0.0147 -2.5368 30 1 -0.3632 -1.0278 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 0.5138 0.8899 33 1 1.6481 1.9665 0.8718 34 1 3.1294 1.4428 0.0352 35 1 1.7057 1.9460 -0.9071 36 1 1.6768 -1.7489 1.2494 37 1 3.1300 -0.7207 1.2496 38 1 1.6767 -0.2073 2.1392 39 1 3.9375 0.3379 -0.9840 40 1 4.0607 -1.4443 -0.8176 41 1 4.0924 -1.7781 -3.1233 42 1 4.6428 -0.0800 -3.1716 43 1 1.6065 -0.9647 -8.2781 44 1 1.4146 0.1528 -6.9027 45 1 2.7673 1.8565 -8.0441 46 1 1.4585 1.3345 -9.1327 47 1 3.6067 1.4402 -10.3505 48 1 3.0305 -0.2405 -10.2468 49 1 8.1828 -0.9184 -8.0489 50 1 5.3395 -1.2184 -7.4793 51 1 4.1608 -1.8582 -8.6514 52 1 0.5992 -0.3169 -2.8376 53 1 1.6025 1.0934 -2.3800 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333437852.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:22 Heat of formation + Delta-G solvation = -80.339668 kcal Electronic energy + Delta-G solvation = -30864.690025 eV Core-core repulsion = 26928.700028 eV Total energy + Delta-G solvation = -3935.989997 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.12815 -40.64364 -39.30777 -38.54665 -36.80191 -35.20738 -33.48615 -31.98489 -31.57346 -30.09954 -28.17586 -27.90997 -27.69250 -26.88614 -25.23383 -23.63480 -22.99174 -22.75593 -21.13369 -20.16799 -19.26966 -18.63275 -18.23462 -17.84576 -17.46527 -16.97063 -16.60117 -16.42455 -15.59939 -15.49732 -15.33770 -14.98692 -14.96423 -14.81278 -14.61957 -14.46177 -14.23370 -14.14315 -13.90475 -13.80158 -13.49026 -13.08618 -13.02276 -12.92472 -12.91079 -12.60782 -12.47265 -12.42060 -12.31762 -12.22391 -12.15430 -11.96040 -11.73327 -11.51969 -11.35221 -11.27527 -11.21211 -11.13694 -10.99608 -10.56575 -10.01978 -9.87424 -9.53125 -8.13135 -6.29704 0.32998 1.23208 1.40332 1.41533 1.53549 2.11831 2.38000 2.44223 3.08650 3.16675 3.50591 3.53120 3.74212 4.08955 4.12735 4.14951 4.16057 4.25235 4.32576 4.36091 4.38016 4.54876 4.57736 4.67771 4.71072 4.75602 4.79688 4.84965 4.89397 4.92030 4.93436 5.00425 5.03997 5.04782 5.11635 5.16815 5.18162 5.20831 5.21239 5.25215 5.30038 5.32403 5.44226 5.49136 5.55547 5.57210 5.61469 5.82258 5.92128 6.02364 6.26712 6.39065 6.64746 6.81679 6.97975 7.40051 8.91034 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.019765 B = 0.002734 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.273509 B =10237.412618 C =11257.358770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.051 4.051 3 C -0.152 4.152 4 C -0.140 4.140 5 C -0.081 4.081 6 H 0.089 0.911 7 C -0.122 4.122 8 C 0.102 3.898 9 N -0.584 5.584 10 C 0.527 3.473 11 O -0.524 6.524 12 C 0.485 3.515 13 O -0.550 6.550 14 N -0.575 5.575 15 C 0.047 3.953 16 C -0.122 4.122 17 C -0.107 4.107 18 C 0.040 3.960 19 H -0.011 1.011 20 C -0.535 4.535 21 H 0.062 0.938 22 C 0.011 3.989 23 N -0.914 5.914 24 Si 0.960 3.040 25 H -0.263 1.263 26 H -0.281 1.281 27 H -0.281 1.281 28 C 0.122 3.878 29 C 0.101 3.899 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.052 0.948 36 H 0.057 0.943 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.095 0.905 40 H 0.101 0.899 41 H 0.066 0.934 42 H 0.058 0.942 43 H 0.070 0.930 44 H 0.156 0.844 45 H 0.046 0.954 46 H 0.098 0.902 47 H 0.054 0.946 48 H 0.057 0.943 49 H 0.261 0.739 50 H 0.086 0.914 51 H 0.042 0.958 52 H 0.080 0.920 53 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.216 1.336 19.384 24.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.051 4.051 3 C -0.209 4.209 4 C -0.197 4.197 5 C -0.100 4.100 6 H 0.108 0.892 7 C -0.160 4.160 8 C -0.020 4.020 9 N -0.316 5.316 10 C 0.311 3.689 11 O -0.405 6.405 12 C 0.268 3.732 13 O -0.429 6.429 14 N -0.306 5.306 15 C -0.073 4.073 16 C -0.160 4.160 17 C -0.145 4.145 18 C 0.021 3.979 19 H 0.007 0.993 20 C -0.573 4.573 21 H 0.081 0.919 22 C -0.189 4.189 23 N -0.552 5.552 24 Si 0.785 3.215 25 H -0.187 1.187 26 H -0.207 1.207 27 H -0.207 1.207 28 C 0.001 3.999 29 C -0.020 4.020 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.113 0.887 40 H 0.120 0.880 41 H 0.085 0.915 42 H 0.076 0.924 43 H 0.089 0.911 44 H 0.172 0.828 45 H 0.065 0.935 46 H 0.117 0.883 47 H 0.073 0.927 48 H 0.075 0.925 49 H 0.070 0.930 50 H 0.104 0.896 51 H 0.060 0.940 52 H 0.099 0.901 53 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -14.098 1.233 19.414 24.024 hybrid contribution 1.318 -0.358 -1.100 1.753 sum -12.780 0.875 18.314 22.350 Atomic orbital electron populations 1.21922 0.93916 1.02175 1.02192 1.20386 0.95899 0.95342 0.93482 1.22094 1.01573 0.95185 1.02073 1.21856 1.01443 1.00201 0.96175 1.22423 0.94889 1.00016 0.92674 0.89241 1.22923 0.96178 1.04927 0.91930 1.22284 0.85192 1.00910 0.93597 1.48409 1.16682 1.62777 1.03769 1.19761 0.87540 0.78906 0.82706 1.90221 1.27186 1.49875 1.73173 1.20343 0.87900 0.80900 0.84065 1.90718 1.29858 1.46179 1.76138 1.48471 1.16476 1.61060 1.04627 1.23485 0.85306 0.97059 1.01472 1.21941 0.99852 0.97076 0.97123 1.21563 0.95128 1.00275 0.97492 1.18900 0.93130 0.92487 0.93431 0.99299 1.21503 0.97071 1.45435 0.93300 0.91939 1.25893 1.00560 0.95277 0.97145 1.70065 1.21545 1.47750 1.15889 0.85470 0.78739 0.77681 0.79567 1.18655 1.20737 1.20689 1.21942 0.88519 0.98131 0.91321 1.22803 0.91910 1.00839 0.86434 0.92350 0.92885 0.91653 0.91581 0.91904 0.92885 0.92391 0.92103 0.91839 0.88714 0.88009 0.91535 0.92365 0.91138 0.82763 0.93525 0.88336 0.92710 0.92473 0.92952 0.89613 0.93950 0.90118 0.89540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 8.28 71.98 0.60 -0.90 16 2 C -0.05 -0.55 0.60 -52.18 -0.03 -0.58 16 3 C -0.15 -1.69 7.82 71.98 0.56 -1.13 16 4 C -0.14 -1.26 8.31 71.98 0.60 -0.66 16 5 C -0.08 -1.19 2.39 -9.40 -0.02 -1.22 16 6 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 7 C -0.12 -1.98 5.42 31.78 0.17 -1.80 16 8 C 0.10 2.71 5.50 86.73 0.48 3.18 16 9 N -0.58 -16.72 3.33 -813.37 -2.71 -19.43 16 10 C 0.53 18.79 7.84 87.27 0.68 19.47 16 11 O -0.52 -18.60 13.27 -3.24 -0.04 -18.64 16 12 C 0.49 21.07 7.71 87.27 0.67 21.75 16 13 O -0.55 -26.68 13.59 -3.25 -0.04 -26.72 16 14 N -0.57 -25.43 2.97 -819.66 -2.43 -27.86 16 15 C 0.05 1.71 6.28 86.51 0.54 2.25 16 16 C -0.12 -4.29 6.10 30.82 0.19 -4.10 16 17 C -0.11 -4.45 5.10 30.62 0.16 -4.29 16 18 C 0.04 2.07 2.25 -11.46 -0.03 2.05 16 19 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 20 C -0.53 -29.81 8.56 25.60 0.22 -29.60 16 21 H 0.06 3.37 7.74 -2.91 -0.02 3.34 16 22 C 0.01 0.61 5.30 84.66 0.45 1.05 16 23 N -0.91 -54.93 11.39 21.45 0.24 -54.68 16 24 Si 0.96 44.27 29.54 68.60 2.03 46.30 16 25 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 26 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 27 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 28 C 0.12 6.31 5.39 86.36 0.47 6.77 16 29 C 0.10 2.04 5.28 86.85 0.46 2.50 16 30 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 31 H 0.05 0.61 7.30 -2.39 -0.02 0.59 16 32 H 0.06 0.57 8.14 -2.39 -0.02 0.56 16 33 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.06 0.70 6.12 -2.39 -0.01 0.68 16 35 H 0.05 0.68 6.00 -2.39 -0.01 0.66 16 36 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16 37 H 0.06 0.54 7.47 -2.39 -0.02 0.52 16 38 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.09 1.35 5.67 -2.39 -0.01 1.34 16 40 H 0.10 1.33 8.13 -2.39 -0.02 1.31 16 41 H 0.07 1.97 7.44 -2.39 -0.02 1.95 16 42 H 0.06 1.78 7.84 -2.39 -0.02 1.76 16 43 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 44 H 0.16 5.45 3.74 -84.32 -0.32 5.14 16 45 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 46 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 47 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 48 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 49 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 50 H 0.09 5.11 5.13 -2.39 -0.01 5.10 16 51 H 0.04 2.17 8.14 -2.39 -0.02 2.15 16 52 H 0.08 1.67 7.94 -2.39 -0.02 1.65 16 53 H 0.09 1.65 5.73 -2.39 -0.01 1.63 16 Total: -1.00 -68.46 393.95 3.79 -64.67 By element: Atomic # 1 Polarization: 21.05 SS G_CDS: 0.58 Total: 21.63 kcal Atomic # 6 Polarization: 8.58 SS G_CDS: 6.16 Total: 14.74 kcal Atomic # 7 Polarization: -97.08 SS G_CDS: -4.89 Total: -101.97 kcal Atomic # 8 Polarization: -45.28 SS G_CDS: -0.09 Total: -45.37 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -68.46 3.79 -64.67 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333437852.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.673 kcal (2) G-P(sol) polarization free energy of solvation -68.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds