Wall clock time and date at job start Tue Mar 31 2020 20:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50694 * 120.00046 * 2 1 4 4 C 1.53004 * 109.46915 * 124.99991 * 3 2 1 5 5 C 1.50708 * 109.46693 * 179.97438 * 4 3 2 6 6 O 1.21279 * 120.00297 * 0.02562 * 5 4 3 7 7 N 1.34775 * 119.99660 * 179.97438 * 5 4 3 8 8 C 1.46930 * 120.63153 * 359.73014 * 7 5 4 9 9 C 1.53618 * 108.54703 * 126.36473 * 8 7 5 10 10 C 1.53044 * 109.24447 * 54.85017 * 9 8 7 11 11 C 1.52998 * 109.46209 * 178.49113 * 10 9 8 12 12 O 1.42906 * 109.47339 * 295.07197 * 11 10 9 13 13 C 1.42892 * 113.99693 * 180.02562 * 12 11 10 14 14 H 1.08994 * 110.89424 * 26.11902 * 13 12 11 15 15 C 1.55165 * 111.00227 * 150.00291 * 13 12 11 16 16 C 1.54321 * 102.94086 * 153.57289 * 15 13 12 17 17 N 1.47019 * 107.27388 * 337.80348 * 16 15 13 18 18 C 1.36937 * 125.64863 * 178.96292 * 17 16 15 19 19 H 1.08001 * 120.00014 * 179.97438 * 18 17 16 20 20 C 1.38818 * 119.99958 * 359.97438 * 18 17 16 21 21 N 1.31613 * 119.99721 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00000 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47059 * 90.00038 * 22 20 18 24 24 H 1.48497 * 109.47074 * 210.00381 * 22 20 18 25 25 H 1.48496 * 109.47055 * 330.00478 * 22 20 18 26 26 C 1.47416 * 108.70428 * 358.94329 * 17 16 15 27 27 C 1.53038 * 109.53888 * 298.51691 * 10 9 8 28 28 C 1.46926 * 120.63254 * 180.02562 * 7 5 4 29 29 H 1.08005 * 119.99846 * 0.02562 * 1 2 3 30 30 H 1.07995 * 120.00080 * 179.72892 * 1 2 3 31 31 H 1.08000 * 119.99390 * 179.97438 * 2 1 3 32 32 H 1.08999 * 109.47261 * 245.00047 * 3 2 1 33 33 H 1.08997 * 109.47273 * 4.99972 * 3 2 1 34 34 H 1.08998 * 109.47237 * 299.99538 * 4 3 2 35 35 H 1.08998 * 109.46722 * 60.00211 * 4 3 2 36 36 H 1.09004 * 109.58196 * 246.19674 * 8 7 5 37 37 H 1.09001 * 109.58901 * 6.61944 * 8 7 5 38 38 H 1.09006 * 109.63347 * 294.86893 * 9 8 7 39 39 H 1.08996 * 109.43786 * 174.72288 * 9 8 7 40 40 H 1.09005 * 109.45675 * 58.53318 * 10 9 8 41 41 H 1.08996 * 109.46803 * 55.06977 * 11 10 9 42 42 H 1.09001 * 109.46703 * 175.07261 * 11 10 9 43 43 H 1.08993 * 110.71433 * 271.93842 * 15 13 12 44 44 H 1.09002 * 110.72031 * 35.03051 * 15 13 12 45 45 H 1.08999 * 109.88079 * 97.22636 * 16 15 13 46 46 H 1.09001 * 109.87935 * 218.23427 * 16 15 13 47 47 H 0.97009 * 120.00109 * 180.02562 * 21 20 18 48 48 H 1.08994 * 110.37072 * 265.28962 * 26 17 16 49 49 H 1.09001 * 110.37010 * 142.96412 * 26 17 16 50 50 H 1.08993 * 109.49879 * 301.40914 * 27 10 9 51 51 H 1.09006 * 109.52399 * 181.32787 * 27 10 9 52 52 H 1.09005 * 109.58359 * 353.38044 * 28 7 5 53 53 H 1.08994 * 109.58909 * 113.80104 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0351 1.3330 1.1817 5 6 3.7890 2.6379 1.1813 6 8 3.5705 3.4643 0.3209 7 7 4.7055 2.8869 2.1376 8 6 4.9762 1.8985 3.1905 9 6 6.4855 1.6133 3.2165 10 6 7.2452 2.9315 3.3820 11 6 8.7475 2.6494 3.4463 12 8 9.0402 1.8924 4.6225 13 6 10.4244 1.5743 4.7794 14 1 11.0516 2.3075 4.2725 15 6 10.8025 1.4617 6.2801 16 6 12.0096 0.5004 6.2611 17 7 11.9314 -0.2741 5.0139 18 6 12.8297 -1.2240 4.6067 19 1 12.6824 -1.7399 3.6693 20 6 13.9297 -1.5239 5.3986 21 7 14.1088 -0.8956 6.5411 22 14 15.1547 -2.8202 4.8434 23 1 16.2232 -2.1781 4.0364 24 1 15.7576 -3.4732 6.0331 25 1 14.4571 -3.8398 4.0194 26 6 10.7255 0.1410 4.2746 27 6 6.9486 3.8461 2.1914 28 6 5.4482 4.1545 2.1509 29 1 -0.5400 0.9354 -0.0004 30 1 -0.5400 -0.9352 -0.0044 31 1 1.8499 -0.9354 0.0004 32 1 2.6213 1.4026 -0.9314 33 1 1.3586 2.1316 0.0896 34 1 2.4773 1.2355 2.1130 35 1 3.7399 0.5064 1.0920 36 1 4.6600 2.2961 4.1549 37 1 4.4326 0.9783 2.9764 38 1 6.7842 1.1361 2.2831 39 1 6.7155 0.9533 4.0530 40 1 6.9279 3.4203 4.3032 41 1 9.0488 2.0828 2.5653 42 1 9.2933 3.5925 3.4760 43 1 11.0902 2.4342 6.6792 44 1 9.9784 1.0390 6.8548 45 1 12.9381 1.0708 6.2858 46 1 11.9634 -0.1696 7.1197 47 1 14.8777 -1.1048 7.0944 48 1 9.8928 -0.5242 4.5027 49 1 10.9221 0.1500 3.2025 50 1 7.2428 3.3479 1.2677 51 1 7.5082 4.7755 2.2976 52 1 5.2161 4.7234 1.2505 53 1 5.1696 4.7320 3.0323 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001489222615.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:45 Heat of formation + Delta-G solvation = -68.657400 kcal Electronic energy + Delta-G solvation = -29040.349959 eV Core-core repulsion = 25104.866543 eV Total energy + Delta-G solvation = -3935.483415 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -41.29405 -39.96293 -38.77775 -37.33915 -36.29082 -34.67747 -33.90580 -32.41715 -31.26573 -31.07598 -29.12290 -28.16314 -26.34883 -25.55474 -24.31453 -23.51582 -22.04340 -21.88580 -21.35091 -20.66151 -19.85284 -18.95141 -18.10412 -17.88509 -16.91669 -16.82255 -16.70285 -16.40923 -15.94367 -15.87711 -15.61620 -15.14776 -15.01423 -14.84418 -14.61678 -14.35388 -14.18258 -13.92011 -13.81696 -13.69022 -13.44843 -13.28895 -13.11860 -12.92021 -12.88253 -12.72421 -12.32588 -12.23391 -12.15586 -12.03340 -11.98697 -11.88188 -11.80755 -11.68027 -11.54713 -11.45361 -11.33673 -10.79865 -10.72402 -10.38886 -10.21062 -9.65875 -8.92801 -7.86369 -5.23083 1.39796 1.46006 1.48045 1.56828 1.61343 2.05155 2.45072 2.66237 3.32365 3.50426 3.71347 3.74231 3.81220 3.90911 3.96971 3.99996 4.08171 4.13268 4.16260 4.19524 4.27595 4.36716 4.42493 4.45885 4.46663 4.57446 4.64487 4.66823 4.70072 4.77476 4.83435 4.87994 4.90509 4.93730 4.97344 4.98415 5.05668 5.07894 5.08722 5.11161 5.20715 5.27268 5.43104 5.44879 5.59014 5.63325 5.73173 5.77406 5.91085 6.15790 6.37490 6.40500 7.08089 7.15868 7.74416 8.38695 9.23916 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.016287 B = 0.001903 C = 0.001771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.749575 B =14708.330113 C =15807.124572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.160 4.160 3 C -0.077 4.077 4 C -0.130 4.130 5 C 0.508 3.492 6 O -0.590 6.590 7 N -0.612 5.612 8 C 0.108 3.892 9 C -0.126 4.126 10 C -0.077 4.077 11 C 0.061 3.939 12 O -0.378 6.378 13 C 0.093 3.907 14 H 0.073 0.927 15 C -0.126 4.126 16 C 0.185 3.815 17 N -0.626 5.626 18 C -0.245 4.245 19 H 0.082 0.918 20 C -0.066 4.066 21 N -0.951 5.951 22 Si 0.981 3.019 23 H -0.285 1.285 24 H -0.293 1.293 25 H -0.269 1.269 26 C 0.118 3.882 27 C -0.119 4.119 28 C 0.112 3.888 29 H 0.094 0.906 30 H 0.109 0.891 31 H 0.122 0.878 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.115 0.885 35 H 0.113 0.887 36 H 0.085 0.915 37 H 0.107 0.893 38 H 0.059 0.941 39 H 0.080 0.920 40 H 0.086 0.914 41 H 0.043 0.957 42 H 0.057 0.943 43 H 0.086 0.914 44 H 0.074 0.926 45 H 0.017 0.983 46 H 0.010 0.990 47 H 0.248 0.752 48 H 0.025 0.975 49 H 0.040 0.960 50 H 0.059 0.941 51 H 0.090 0.910 52 H 0.077 0.923 53 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.662 7.882 -8.367 27.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.178 4.178 3 C -0.115 4.115 4 C -0.169 4.169 5 C 0.298 3.702 6 O -0.471 6.471 7 N -0.345 5.345 8 C -0.014 4.014 9 C -0.164 4.164 10 C -0.096 4.096 11 C -0.016 4.016 12 O -0.296 6.296 13 C 0.034 3.966 14 H 0.091 0.909 15 C -0.164 4.164 16 C 0.060 3.940 17 N -0.354 5.354 18 C -0.374 4.374 19 H 0.100 0.900 20 C -0.259 4.259 21 N -0.599 5.599 22 Si 0.809 3.191 23 H -0.211 1.211 24 H -0.220 1.220 25 H -0.194 1.194 26 C -0.008 4.008 27 C -0.158 4.158 28 C -0.011 4.011 29 H 0.113 0.887 30 H 0.128 0.872 31 H 0.140 0.860 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.133 0.867 35 H 0.132 0.868 36 H 0.104 0.896 37 H 0.125 0.875 38 H 0.078 0.922 39 H 0.099 0.901 40 H 0.104 0.896 41 H 0.062 0.938 42 H 0.075 0.925 43 H 0.104 0.896 44 H 0.092 0.908 45 H 0.035 0.965 46 H 0.028 0.972 47 H 0.057 0.943 48 H 0.043 0.957 49 H 0.059 0.941 50 H 0.078 0.922 51 H 0.109 0.891 52 H 0.096 0.904 53 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -24.752 8.170 -8.608 27.451 hybrid contribution 1.392 -0.631 -0.248 1.548 sum -23.361 7.539 -8.856 26.096 Atomic orbital electron populations 1.24042 0.96042 1.02471 1.00541 1.23000 0.96228 0.98141 1.00405 1.20441 0.97601 0.95723 0.97711 1.21694 0.99025 0.94462 1.01763 1.21296 0.79420 0.89513 0.79931 1.90666 1.67392 1.50036 1.38968 1.48315 1.38977 1.18980 1.28184 1.22058 0.96013 0.92626 0.90729 1.21966 0.94436 0.97209 1.02772 1.21071 0.92384 0.96683 0.99465 1.22725 0.96803 0.94796 0.87263 1.87835 1.23861 1.74029 1.43921 1.23019 0.82228 0.94894 0.96458 0.90919 1.22818 0.97997 1.00146 0.95412 1.20911 0.93895 0.91211 0.87957 1.44661 1.25133 1.44449 1.21166 1.19456 1.01533 1.12693 1.03700 0.89985 1.25693 1.00680 1.02386 0.97167 1.70176 1.30457 1.45595 1.13717 0.85044 0.78723 0.78559 0.76784 1.21145 1.21973 1.19374 1.22021 0.88835 0.94768 0.95158 1.21834 0.95678 1.00511 0.97731 1.21592 0.90715 0.85606 1.03163 0.88750 0.87230 0.85991 0.91768 0.92159 0.86716 0.86849 0.89648 0.87461 0.92213 0.90112 0.89553 0.93846 0.92510 0.89562 0.90761 0.96486 0.97153 0.94272 0.95691 0.94129 0.92225 0.89113 0.90442 0.90022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.10 14.32 67.78 0.97 -1.13 16 2 C -0.16 -1.82 9.52 25.64 0.24 -1.58 16 3 C -0.08 -1.11 4.95 29.85 0.15 -0.97 16 4 C -0.13 -1.56 4.03 29.85 0.12 -1.44 16 5 C 0.51 9.61 7.70 87.66 0.67 10.29 16 6 O -0.59 -16.07 15.40 -3.02 -0.05 -16.12 16 7 N -0.61 -9.61 2.97 -817.98 -2.43 -12.04 16 8 C 0.11 1.23 6.37 86.51 0.55 1.78 16 9 C -0.13 -1.95 5.29 30.82 0.16 -1.79 16 10 C -0.08 -1.27 2.39 -10.77 -0.03 -1.30 16 11 C 0.06 1.31 5.15 71.98 0.37 1.68 16 12 O -0.38 -10.75 9.66 -148.98 -1.44 -12.19 16 13 C 0.09 3.18 3.55 31.99 0.11 3.29 16 14 H 0.07 2.40 7.83 -2.39 -0.02 2.38 16 15 C -0.13 -4.65 6.69 31.78 0.21 -4.43 16 16 C 0.19 9.23 5.37 86.73 0.47 9.70 16 17 N -0.63 -32.69 3.39 -692.01 -2.35 -35.04 16 18 C -0.25 -13.86 10.28 84.03 0.86 -13.00 16 19 H 0.08 4.43 7.83 -2.91 -0.02 4.40 16 20 C -0.07 -3.79 5.49 84.86 0.47 -3.32 16 21 N -0.95 -57.28 10.31 21.65 0.22 -57.05 16 22 Si 0.98 45.70 29.55 68.60 2.03 47.73 16 23 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 24 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 25 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 26 C 0.12 4.89 6.97 86.86 0.61 5.50 16 27 C -0.12 -1.75 5.36 30.68 0.16 -1.59 16 28 C 0.11 1.74 6.43 86.38 0.56 2.30 16 29 H 0.09 1.03 7.84 -2.91 -0.02 1.01 16 30 H 0.11 0.91 8.06 -2.91 -0.02 0.88 16 31 H 0.12 1.09 8.06 -2.91 -0.02 1.06 16 32 H 0.06 1.11 8.10 -2.39 -0.02 1.09 16 33 H 0.06 1.02 7.75 -2.39 -0.02 1.00 16 34 H 0.11 0.93 7.93 -2.39 -0.02 0.91 16 35 H 0.11 0.99 7.70 -2.39 -0.02 0.98 16 36 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16 37 H 0.11 0.80 5.93 -2.39 -0.01 0.79 16 38 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 39 H 0.08 1.44 7.79 -2.39 -0.02 1.42 16 40 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 41 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.06 1.13 8.12 -2.39 -0.02 1.11 16 43 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 44 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 45 H 0.02 0.93 7.38 -2.39 -0.02 0.92 16 46 H 0.01 0.57 7.50 -2.39 -0.02 0.56 16 47 H 0.25 14.48 8.31 -92.70 -0.77 13.71 16 48 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 49 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 50 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 51 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 52 H 0.08 1.48 7.01 -2.38 -0.02 1.47 16 53 H 0.08 1.05 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -71.70 415.14 3.50 -68.20 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: 0.85 Total: 12.51 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: 6.66 Total: 3.99 kcal Atomic # 7 Polarization: -99.58 SS G_CDS: -4.55 Total: -104.13 kcal Atomic # 8 Polarization: -26.82 SS G_CDS: -1.49 Total: -28.31 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -71.70 3.50 -68.20 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489222615.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.458 kcal (2) G-P(sol) polarization free energy of solvation -71.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.93 seconds