Wall clock time and date at job start Tue Mar 31 2020 19:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50708 * 119.99945 * 2 1 4 4 C 1.53000 * 109.46966 * 0.02562 * 3 2 1 5 5 C 1.52999 * 109.47361 * 240.00227 * 3 2 1 6 6 C 1.53003 * 109.46905 * 120.00109 * 3 2 1 7 7 C 1.50694 * 109.46830 * 180.02562 * 6 3 2 8 8 O 1.21275 * 120.00534 * 0.02562 * 7 6 3 9 9 N 1.34783 * 119.99902 * 179.72264 * 7 6 3 10 10 C 1.46935 * 120.64019 * 359.97438 * 9 7 6 11 11 C 1.53628 * 108.53413 * 126.29211 * 10 9 7 12 12 C 1.52992 * 109.27523 * 54.80545 * 11 10 9 13 13 C 1.52981 * 109.63507 * 298.65615 * 12 11 10 14 14 C 1.46927 * 120.64411 * 180.27330 * 9 7 6 15 15 C 1.53257 * 109.36067 * 178.70870 * 12 11 10 16 16 N 1.47157 * 108.40921 * 187.91445 * 15 12 11 17 17 C 1.36938 * 120.98611 * 230.49670 * 16 15 12 18 18 H 1.08000 * 120.00073 * 26.59274 * 17 16 15 19 19 C 1.38808 * 119.99674 * 206.57732 * 17 16 15 20 20 N 1.31622 * 120.00332 * 17.04270 * 19 17 16 21 21 Si 1.86803 * 119.99835 * 197.03461 * 19 17 16 22 22 H 1.48506 * 109.47159 * 94.15713 * 21 19 17 23 23 H 1.48501 * 109.47536 * 214.15619 * 21 19 17 24 24 H 1.48496 * 109.47489 * 334.16003 * 21 19 17 25 25 C 1.47152 * 118.02552 * 50.48131 * 16 15 12 26 26 C 1.53296 * 108.37071 * 309.40590 * 25 16 15 27 27 O 1.42901 * 109.54650 * 58.91564 * 12 11 10 28 28 H 1.08002 * 119.99650 * 359.97438 * 1 2 3 29 29 H 1.08003 * 119.99937 * 180.02562 * 1 2 3 30 30 H 1.07998 * 120.00368 * 180.02562 * 2 1 3 31 31 H 1.08999 * 109.47242 * 179.97438 * 4 3 2 32 32 H 1.08999 * 109.47191 * 299.99932 * 4 3 2 33 33 H 1.09003 * 109.47010 * 59.99684 * 4 3 2 34 34 H 1.08998 * 109.47260 * 300.00104 * 5 3 2 35 35 H 1.08999 * 109.46835 * 60.00044 * 5 3 2 36 36 H 1.08993 * 109.46857 * 179.97438 * 5 3 2 37 37 H 1.08998 * 109.46980 * 60.00346 * 6 3 2 38 38 H 1.09003 * 109.47313 * 300.00464 * 6 3 2 39 39 H 1.08993 * 109.58921 * 246.12317 * 10 9 7 40 40 H 1.09001 * 109.58706 * 6.55271 * 10 9 7 41 41 H 1.08999 * 109.62848 * 294.80519 * 11 10 9 42 42 H 1.09001 * 109.44388 * 174.69718 * 11 10 9 43 43 H 1.08993 * 109.49239 * 301.24421 * 13 12 11 44 44 H 1.09004 * 109.51056 * 181.17990 * 13 12 11 45 45 H 1.09000 * 109.58680 * 353.44614 * 14 9 7 46 46 H 1.09009 * 109.58330 * 113.72736 * 14 9 7 47 47 H 1.08999 * 109.68352 * 307.65007 * 15 12 11 48 48 H 1.09004 * 109.67311 * 68.19106 * 15 12 11 49 49 H 0.96998 * 119.99935 * 179.97438 * 20 19 17 50 50 H 1.08995 * 109.68468 * 69.12175 * 25 16 15 51 51 H 1.09004 * 109.68603 * 189.68610 * 25 16 15 52 52 H 1.08997 * 109.51483 * 172.27978 * 26 25 16 53 53 H 1.09005 * 109.51330 * 292.37739 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3052 0.0000 4 6 1.0693 2.4681 0.0006 5 6 2.9431 1.3863 -1.2492 6 6 2.9432 1.3862 1.2493 7 6 3.6962 2.6915 1.2496 8 8 3.5440 3.4797 0.3405 9 7 4.5342 2.9858 2.2633 10 6 4.7239 2.0445 3.3755 11 6 6.2271 1.7678 3.5302 12 6 6.9704 3.0948 3.6960 13 6 6.7644 3.9585 2.4503 14 6 5.2709 4.2569 2.2810 15 6 8.4663 2.8193 3.8828 16 7 9.1322 4.0849 4.2295 17 6 10.2476 4.5029 3.5538 18 1 10.4126 4.1846 2.5350 19 6 11.1658 5.3358 4.1782 20 7 11.1596 5.4570 5.4888 21 14 12.4104 6.2847 3.1584 22 1 11.8821 7.6423 2.8700 23 1 13.6843 6.3993 3.9130 24 1 12.6544 5.5669 1.8815 25 6 8.5638 4.8883 5.3235 26 6 7.0633 5.0648 5.0641 27 8 6.4695 3.7831 4.8438 28 1 -0.5400 0.9354 0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8501 -0.9353 -0.0004 31 1 1.6142 3.4121 0.0011 32 1 0.4423 2.4105 -0.8891 33 1 0.4429 2.4101 0.8909 34 1 3.6515 0.5579 -1.2493 35 1 2.3164 1.3286 -2.1392 36 1 3.4877 2.3305 -1.2494 37 1 3.6515 0.5577 1.2492 38 1 2.3166 1.3283 2.1393 39 1 4.3334 2.4813 4.2945 40 1 4.1999 1.1134 3.1595 41 1 6.5975 1.2517 2.6444 42 1 6.3929 1.1456 4.4097 43 1 7.1307 3.4251 1.5733 44 1 7.3118 4.8945 2.5618 45 1 5.1081 4.7867 1.3424 46 1 4.9218 4.8700 3.1119 47 1 8.6091 2.0972 4.6868 48 1 8.8855 2.4257 2.9567 49 1 11.8015 6.0387 5.9251 50 1 8.7142 4.3743 6.2729 51 1 9.0486 5.8641 5.3528 52 1 6.5975 5.5381 5.9284 53 1 6.9172 5.6907 4.1836 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001503723492.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:03 Heat of formation + Delta-G solvation = -32.614114 kcal Electronic energy + Delta-G solvation = -31304.700571 eV Core-core repulsion = 27370.780109 eV Total energy + Delta-G solvation = -3933.920461 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.66187 -39.36671 -37.40397 -36.00953 -34.38657 -32.56427 -31.76796 -31.10430 -30.83490 -28.72812 -27.92516 -27.36683 -26.35148 -23.78302 -23.46675 -22.98652 -22.28486 -20.97102 -19.38398 -18.54695 -18.27302 -17.28587 -16.87563 -15.81573 -15.72272 -15.60631 -15.18065 -15.05336 -14.57101 -14.50279 -14.24013 -14.03226 -13.92062 -13.70787 -13.41579 -13.12320 -12.90595 -12.82937 -12.59508 -12.18106 -11.98509 -11.94743 -11.83678 -11.62597 -11.31601 -11.24016 -11.16802 -11.10123 -10.96577 -10.91316 -10.78667 -10.70597 -10.56427 -10.24882 -10.19299 -9.96489 -9.60891 -9.52301 -9.33948 -9.02227 -8.56587 -8.43854 -6.73686 -5.85511 -3.29039 2.05118 2.64749 3.06597 3.33033 3.40710 3.41603 4.27180 4.37835 4.42897 4.57708 4.71709 4.81818 4.88954 5.04382 5.06895 5.16667 5.26187 5.30911 5.32014 5.36891 5.40757 5.46220 5.52413 5.56283 5.59365 5.68862 5.72604 5.85534 5.87546 5.90223 5.97536 6.00935 6.04273 6.10911 6.13483 6.20904 6.29903 6.34569 6.38058 6.40224 6.43886 6.51159 6.56004 6.59780 6.70993 6.81249 7.11680 7.49702 7.50703 7.70363 7.92407 8.24109 8.32474 9.10571 9.73499 10.30706 11.22213 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.023716 B = 0.002658 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.361049 B =10530.723077 C =10946.724336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.143 4.143 3 C -0.020 4.020 4 C -0.155 4.155 5 C -0.149 4.149 6 C -0.128 4.128 7 C 0.515 3.485 8 O -0.539 6.539 9 N -0.606 5.606 10 C 0.112 3.888 11 C -0.118 4.118 12 C 0.106 3.894 13 C -0.148 4.148 14 C 0.117 3.883 15 C 0.126 3.874 16 N -0.591 5.591 17 C -0.253 4.253 18 H 0.067 0.933 19 C 0.003 3.997 20 N -0.902 5.902 21 Si 0.903 3.097 22 H -0.287 1.287 23 H -0.291 1.291 24 H -0.279 1.279 25 C 0.141 3.859 26 C 0.036 3.964 27 O -0.382 6.382 28 H 0.103 0.897 29 H 0.094 0.906 30 H 0.107 0.893 31 H 0.087 0.913 32 H 0.052 0.948 33 H 0.048 0.952 34 H 0.047 0.953 35 H 0.050 0.950 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.081 0.919 43 H 0.067 0.933 44 H 0.093 0.907 45 H 0.086 0.914 46 H 0.067 0.933 47 H 0.025 0.975 48 H 0.058 0.942 49 H 0.254 0.746 50 H 0.026 0.974 51 H 0.092 0.908 52 H 0.078 0.922 53 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.661 -9.316 -6.349 21.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.161 4.161 3 C -0.020 4.020 4 C -0.212 4.212 5 C -0.206 4.206 6 C -0.168 4.168 7 C 0.304 3.696 8 O -0.418 6.418 9 N -0.339 5.339 10 C -0.011 4.011 11 C -0.157 4.157 12 C 0.065 3.935 13 C -0.186 4.186 14 C -0.005 4.005 15 C 0.000 4.000 16 N -0.315 5.315 17 C -0.382 4.382 18 H 0.085 0.915 19 C -0.196 4.196 20 N -0.547 5.547 21 Si 0.733 3.267 22 H -0.214 1.214 23 H -0.217 1.217 24 H -0.204 1.204 25 C 0.016 3.984 26 C -0.042 4.042 27 O -0.301 6.301 28 H 0.122 0.878 29 H 0.112 0.888 30 H 0.125 0.875 31 H 0.106 0.894 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.106 0.894 37 H 0.111 0.889 38 H 0.110 0.890 39 H 0.096 0.904 40 H 0.098 0.902 41 H 0.095 0.905 42 H 0.099 0.901 43 H 0.086 0.914 44 H 0.111 0.889 45 H 0.105 0.895 46 H 0.086 0.914 47 H 0.043 0.957 48 H 0.077 0.923 49 H 0.064 0.936 50 H 0.044 0.956 51 H 0.110 0.890 52 H 0.096 0.904 53 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -18.729 -8.871 -6.606 21.751 hybrid contribution 1.064 0.432 -0.345 1.199 sum -17.665 -8.439 -6.951 20.775 Atomic orbital electron populations 1.24007 0.96185 1.01997 1.01335 1.22971 0.95931 0.97655 0.99582 1.19384 0.94926 0.93154 0.94576 1.22177 0.98495 0.99808 1.00709 1.22050 0.99187 1.03683 0.95691 1.21731 0.99117 0.96055 0.99851 1.20574 0.79271 0.88487 0.81270 1.90547 1.64782 1.50968 1.35526 1.48207 1.43514 1.19884 1.22279 1.21792 0.96859 0.92566 0.89855 1.21941 0.94343 0.96685 1.02683 1.21793 0.95239 0.91056 0.85430 1.22347 0.95055 1.02878 0.98361 1.21573 0.91400 0.84840 1.02653 1.21517 0.90050 0.89778 0.98687 1.44044 1.29751 1.18132 1.39583 1.19182 0.97814 1.26895 0.94288 0.91484 1.25037 0.97375 1.01970 0.95228 1.70035 1.37736 1.39926 1.06979 0.86264 0.80654 0.80284 0.79511 1.21410 1.21733 1.20376 1.21405 0.88472 0.98343 0.90212 1.23322 0.97023 0.84281 0.99555 1.87766 1.64089 1.32181 1.46070 0.87848 0.88808 0.87535 0.89442 0.92924 0.93340 0.93413 0.93121 0.89356 0.88904 0.89024 0.90394 0.90233 0.90536 0.90064 0.91437 0.88911 0.89541 0.91434 0.95725 0.92328 0.93555 0.95589 0.89015 0.90365 0.93799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.52 13.70 29.01 0.40 -1.12 16 2 C -0.14 -1.18 8.76 -36.02 -0.32 -1.49 16 3 C -0.02 -0.19 0.74 -155.66 -0.11 -0.31 16 4 C -0.16 -1.58 6.83 37.16 0.25 -1.33 16 5 C -0.15 -1.57 8.16 37.16 0.30 -1.27 16 6 C -0.13 -1.20 3.10 -27.88 -0.09 -1.29 16 7 C 0.51 6.48 7.11 -10.99 -0.08 6.40 16 8 O -0.54 -8.18 10.76 5.56 0.06 -8.12 16 9 N -0.61 -7.73 2.96 -172.47 -0.51 -8.24 16 10 C 0.11 1.24 6.13 -3.48 -0.02 1.21 16 11 C -0.12 -1.50 5.12 -26.41 -0.14 -1.63 16 12 C 0.11 1.75 0.68 -90.50 -0.06 1.68 16 13 C -0.15 -2.40 4.33 -26.62 -0.12 -2.51 16 14 C 0.12 1.71 6.20 -3.69 -0.02 1.68 16 15 C 0.13 2.54 5.39 -3.55 -0.02 2.52 16 16 N -0.59 -14.23 2.55 -171.85 -0.44 -14.67 16 17 C -0.25 -6.69 9.64 -15.06 -0.15 -6.83 16 18 H 0.07 1.76 7.88 -52.49 -0.41 1.34 16 19 C 0.00 0.07 4.94 -17.43 -0.09 -0.01 16 20 N -0.90 -25.61 11.18 55.49 0.62 -24.99 16 21 Si 0.90 21.31 29.59 -169.99 -5.03 16.28 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 C 0.14 3.27 5.44 -3.53 -0.02 3.25 16 26 C 0.04 0.67 6.60 37.31 0.25 0.91 16 27 O -0.38 -6.77 9.00 -35.23 -0.32 -7.09 16 28 H 0.10 0.79 5.69 -52.49 -0.30 0.49 16 29 H 0.09 0.60 8.06 -52.48 -0.42 0.18 16 30 H 0.11 0.77 8.06 -52.49 -0.42 0.35 16 31 H 0.09 1.10 5.51 -51.93 -0.29 0.81 16 32 H 0.05 0.50 7.50 -51.93 -0.39 0.11 16 33 H 0.05 0.45 7.50 -51.93 -0.39 0.06 16 34 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.09 1.14 5.51 -51.93 -0.29 0.85 16 37 H 0.09 0.75 7.71 -51.93 -0.40 0.35 16 38 H 0.09 0.75 7.93 -51.93 -0.41 0.34 16 39 H 0.08 0.91 7.82 -51.93 -0.41 0.50 16 40 H 0.08 0.65 5.94 -51.93 -0.31 0.34 16 41 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 44 H 0.09 1.73 6.16 -51.93 -0.32 1.41 16 45 H 0.09 1.32 7.01 -51.93 -0.36 0.95 16 46 H 0.07 1.01 7.83 -51.92 -0.41 0.60 16 47 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.06 1.15 7.95 -51.93 -0.41 0.74 16 49 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 50 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 51 H 0.09 2.35 6.17 -51.93 -0.32 2.03 16 52 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 53 H 0.04 0.81 6.29 -51.93 -0.33 0.48 16 LS Contribution 390.17 15.07 5.88 5.88 Total: -1.00 -29.55 390.17 -8.86 -38.41 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -9.10 Total: 2.67 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: -0.02 Total: -0.12 kcal Atomic # 7 Polarization: -47.57 SS G_CDS: -0.33 Total: -47.90 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: -0.26 Total: -15.22 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.03 Total: 16.28 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -29.55 -8.86 -38.41 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001503723492.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.799 kcal (2) G-P(sol) polarization free energy of solvation -29.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds