Wall clock time and date at job start Tue Mar 31 2020 19:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50708 * 119.99945 * 2 1 4 4 C 1.53000 * 109.46966 * 0.02562 * 3 2 1 5 5 C 1.52999 * 109.47361 * 240.00227 * 3 2 1 6 6 C 1.53003 * 109.46905 * 120.00109 * 3 2 1 7 7 C 1.50694 * 109.46830 * 180.02562 * 6 3 2 8 8 O 1.21275 * 120.00534 * 0.02562 * 7 6 3 9 9 N 1.34783 * 119.99902 * 179.72264 * 7 6 3 10 10 C 1.46935 * 120.64019 * 359.97438 * 9 7 6 11 11 C 1.53628 * 108.53413 * 126.29211 * 10 9 7 12 12 C 1.52992 * 109.27523 * 54.80545 * 11 10 9 13 13 C 1.52981 * 109.63507 * 298.65615 * 12 11 10 14 14 C 1.46927 * 120.64411 * 180.27330 * 9 7 6 15 15 C 1.53257 * 109.36067 * 178.70870 * 12 11 10 16 16 N 1.47157 * 108.40921 * 187.91445 * 15 12 11 17 17 C 1.36938 * 120.98611 * 230.49670 * 16 15 12 18 18 H 1.08000 * 120.00073 * 26.59274 * 17 16 15 19 19 C 1.38808 * 119.99674 * 206.57732 * 17 16 15 20 20 N 1.31622 * 120.00332 * 17.04270 * 19 17 16 21 21 Si 1.86803 * 119.99835 * 197.03461 * 19 17 16 22 22 H 1.48506 * 109.47159 * 94.15713 * 21 19 17 23 23 H 1.48501 * 109.47536 * 214.15619 * 21 19 17 24 24 H 1.48496 * 109.47489 * 334.16003 * 21 19 17 25 25 C 1.47152 * 118.02552 * 50.48131 * 16 15 12 26 26 C 1.53296 * 108.37071 * 309.40590 * 25 16 15 27 27 O 1.42901 * 109.54650 * 58.91564 * 12 11 10 28 28 H 1.08002 * 119.99650 * 359.97438 * 1 2 3 29 29 H 1.08003 * 119.99937 * 180.02562 * 1 2 3 30 30 H 1.07998 * 120.00368 * 180.02562 * 2 1 3 31 31 H 1.08999 * 109.47242 * 179.97438 * 4 3 2 32 32 H 1.08999 * 109.47191 * 299.99932 * 4 3 2 33 33 H 1.09003 * 109.47010 * 59.99684 * 4 3 2 34 34 H 1.08998 * 109.47260 * 300.00104 * 5 3 2 35 35 H 1.08999 * 109.46835 * 60.00044 * 5 3 2 36 36 H 1.08993 * 109.46857 * 179.97438 * 5 3 2 37 37 H 1.08998 * 109.46980 * 60.00346 * 6 3 2 38 38 H 1.09003 * 109.47313 * 300.00464 * 6 3 2 39 39 H 1.08993 * 109.58921 * 246.12317 * 10 9 7 40 40 H 1.09001 * 109.58706 * 6.55271 * 10 9 7 41 41 H 1.08999 * 109.62848 * 294.80519 * 11 10 9 42 42 H 1.09001 * 109.44388 * 174.69718 * 11 10 9 43 43 H 1.08993 * 109.49239 * 301.24421 * 13 12 11 44 44 H 1.09004 * 109.51056 * 181.17990 * 13 12 11 45 45 H 1.09000 * 109.58680 * 353.44614 * 14 9 7 46 46 H 1.09009 * 109.58330 * 113.72736 * 14 9 7 47 47 H 1.08999 * 109.68352 * 307.65007 * 15 12 11 48 48 H 1.09004 * 109.67311 * 68.19106 * 15 12 11 49 49 H 0.96998 * 119.99935 * 179.97438 * 20 19 17 50 50 H 1.08995 * 109.68468 * 69.12175 * 25 16 15 51 51 H 1.09004 * 109.68603 * 189.68610 * 25 16 15 52 52 H 1.08997 * 109.51483 * 172.27978 * 26 25 16 53 53 H 1.09005 * 109.51330 * 292.37739 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3052 0.0000 4 6 1.0693 2.4681 0.0006 5 6 2.9431 1.3863 -1.2492 6 6 2.9432 1.3862 1.2493 7 6 3.6962 2.6915 1.2496 8 8 3.5440 3.4797 0.3405 9 7 4.5342 2.9858 2.2633 10 6 4.7239 2.0445 3.3755 11 6 6.2271 1.7678 3.5302 12 6 6.9704 3.0948 3.6960 13 6 6.7644 3.9585 2.4503 14 6 5.2709 4.2569 2.2810 15 6 8.4663 2.8193 3.8828 16 7 9.1322 4.0849 4.2295 17 6 10.2476 4.5029 3.5538 18 1 10.4126 4.1846 2.5350 19 6 11.1658 5.3358 4.1782 20 7 11.1596 5.4570 5.4888 21 14 12.4104 6.2847 3.1584 22 1 11.8821 7.6423 2.8700 23 1 13.6843 6.3993 3.9130 24 1 12.6544 5.5669 1.8815 25 6 8.5638 4.8883 5.3235 26 6 7.0633 5.0648 5.0641 27 8 6.4695 3.7831 4.8438 28 1 -0.5400 0.9354 0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8501 -0.9353 -0.0004 31 1 1.6142 3.4121 0.0011 32 1 0.4423 2.4105 -0.8891 33 1 0.4429 2.4101 0.8909 34 1 3.6515 0.5579 -1.2493 35 1 2.3164 1.3286 -2.1392 36 1 3.4877 2.3305 -1.2494 37 1 3.6515 0.5577 1.2492 38 1 2.3166 1.3283 2.1393 39 1 4.3334 2.4813 4.2945 40 1 4.1999 1.1134 3.1595 41 1 6.5975 1.2517 2.6444 42 1 6.3929 1.1456 4.4097 43 1 7.1307 3.4251 1.5733 44 1 7.3118 4.8945 2.5618 45 1 5.1081 4.7867 1.3424 46 1 4.9218 4.8700 3.1119 47 1 8.6091 2.0972 4.6868 48 1 8.8855 2.4257 2.9567 49 1 11.8015 6.0387 5.9251 50 1 8.7142 4.3743 6.2729 51 1 9.0486 5.8641 5.3528 52 1 6.5975 5.5381 5.9284 53 1 6.9172 5.6907 4.1836 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001503723492.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:02 Heat of formation + Delta-G solvation = -48.486301 kcal Electronic energy + Delta-G solvation = -31305.388840 eV Core-core repulsion = 27370.780109 eV Total energy + Delta-G solvation = -3934.608731 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.73567 -40.61481 -38.34460 -37.18137 -36.12508 -33.92975 -32.95966 -32.66777 -31.75485 -30.08543 -29.05333 -28.15455 -27.94628 -25.31066 -24.70648 -24.36234 -23.19987 -22.36262 -20.64416 -19.78484 -18.98867 -18.80750 -18.20899 -17.03745 -16.85894 -16.74597 -16.47223 -16.35961 -15.91558 -15.78626 -15.50594 -15.28785 -15.06415 -14.88435 -14.75295 -14.60053 -14.14573 -13.87401 -13.56593 -13.41607 -13.21440 -13.05247 -12.94878 -12.85232 -12.77351 -12.61367 -12.45677 -12.30446 -12.18058 -12.14790 -12.05846 -11.95110 -11.80696 -11.69327 -11.62413 -11.46967 -10.97125 -10.73646 -10.46132 -10.35685 -10.18316 -9.54758 -8.69458 -7.90558 -5.36989 1.43657 1.45603 1.47074 1.54008 1.71014 2.09974 2.46005 2.89553 3.23366 3.51150 3.56626 3.81564 3.88091 3.90990 3.96595 4.03070 4.10741 4.21117 4.34418 4.40551 4.45954 4.46465 4.51346 4.56592 4.60426 4.69010 4.74114 4.77877 4.78386 4.83986 4.85491 4.87736 4.94415 4.99382 5.02383 5.07800 5.10366 5.11708 5.16304 5.23779 5.30179 5.35996 5.48719 5.55633 5.55835 5.62116 5.67896 5.83302 6.01193 6.29731 6.42878 6.54442 7.07413 7.28856 7.76624 8.30144 9.14536 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.023716 B = 0.002658 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.361049 B =10530.723077 C =10946.724336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.148 4.148 3 C -0.020 4.020 4 C -0.152 4.152 5 C -0.147 4.147 6 C -0.123 4.123 7 C 0.510 3.490 8 O -0.569 6.569 9 N -0.608 5.608 10 C 0.116 3.884 11 C -0.114 4.114 12 C 0.110 3.890 13 C -0.138 4.138 14 C 0.128 3.872 15 C 0.123 3.877 16 N -0.608 5.608 17 C -0.258 4.258 18 H 0.067 0.933 19 C -0.049 4.049 20 N -0.934 5.934 21 Si 0.965 3.035 22 H -0.286 1.286 23 H -0.295 1.295 24 H -0.269 1.269 25 C 0.148 3.852 26 C 0.051 3.949 27 O -0.377 6.377 28 H 0.100 0.900 29 H 0.108 0.892 30 H 0.121 0.879 31 H 0.060 0.940 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.050 0.950 36 H 0.060 0.940 37 H 0.116 0.884 38 H 0.112 0.888 39 H 0.076 0.924 40 H 0.119 0.881 41 H 0.089 0.911 42 H 0.093 0.907 43 H 0.065 0.935 44 H 0.063 0.937 45 H 0.075 0.925 46 H 0.064 0.936 47 H 0.017 0.983 48 H 0.059 0.941 49 H 0.251 0.749 50 H -0.001 1.001 51 H 0.062 0.938 52 H 0.103 0.897 53 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.741 -11.497 -6.946 24.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.166 4.166 3 C -0.020 4.020 4 C -0.209 4.209 5 C -0.204 4.204 6 C -0.162 4.162 7 C 0.301 3.699 8 O -0.450 6.450 9 N -0.341 5.341 10 C -0.006 4.006 11 C -0.152 4.152 12 C 0.069 3.931 13 C -0.176 4.176 14 C 0.005 3.995 15 C -0.003 4.003 16 N -0.332 5.332 17 C -0.388 4.388 18 H 0.084 0.916 19 C -0.245 4.245 20 N -0.581 5.581 21 Si 0.793 3.207 22 H -0.213 1.213 23 H -0.222 1.222 24 H -0.194 1.194 25 C 0.022 3.978 26 C -0.027 4.027 27 O -0.296 6.296 28 H 0.118 0.882 29 H 0.127 0.873 30 H 0.139 0.861 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.079 0.921 37 H 0.134 0.866 38 H 0.130 0.870 39 H 0.094 0.906 40 H 0.137 0.863 41 H 0.108 0.892 42 H 0.111 0.889 43 H 0.084 0.916 44 H 0.081 0.919 45 H 0.093 0.907 46 H 0.083 0.917 47 H 0.035 0.965 48 H 0.078 0.922 49 H 0.060 0.940 50 H 0.017 0.983 51 H 0.080 0.920 52 H 0.121 0.879 53 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -20.838 -11.084 -7.213 24.680 hybrid contribution 1.695 1.082 -0.204 2.021 sum -19.143 -10.003 -7.417 22.837 Atomic orbital electron populations 1.24148 0.96171 1.02595 1.00330 1.22933 0.96030 0.97197 1.00443 1.19365 0.94724 0.93740 0.94198 1.22114 0.98546 0.98936 1.01258 1.21991 0.99375 1.02513 0.96507 1.21793 0.99389 0.94469 1.00538 1.21224 0.78909 0.89320 0.80426 1.90562 1.65580 1.52215 1.36635 1.48272 1.43370 1.19391 1.23037 1.21924 0.95717 0.93777 0.89210 1.21971 0.95176 0.94192 1.03895 1.21837 0.93186 0.93057 0.84986 1.22188 0.96009 1.01302 0.98115 1.21286 0.90334 0.86028 1.01895 1.21707 0.92381 0.87998 0.98227 1.44267 1.29661 1.19819 1.39472 1.19455 0.98326 1.26547 0.94437 0.91570 1.25746 0.99433 1.03157 0.96127 1.70180 1.38669 1.40816 1.08388 0.85290 0.78184 0.78913 0.78294 1.21281 1.22171 1.19406 1.21234 0.91308 0.96283 0.88975 1.23098 0.93835 0.85082 1.00688 1.87782 1.63491 1.31665 1.46694 0.88217 0.87347 0.86065 0.92125 0.92748 0.92436 0.92438 0.93099 0.92080 0.86637 0.86981 0.90557 0.86272 0.89248 0.88866 0.91643 0.91863 0.90673 0.91749 0.96481 0.92237 0.94035 0.98297 0.92008 0.87947 0.93565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.37 13.70 67.78 0.93 -1.44 16 2 C -0.15 -1.92 8.76 25.65 0.22 -1.69 16 3 C -0.02 -0.33 0.74 -52.92 -0.04 -0.37 16 4 C -0.15 -2.88 6.83 71.98 0.49 -2.39 16 5 C -0.15 -2.87 8.16 71.98 0.59 -2.28 16 6 C -0.12 -1.86 3.10 29.85 0.09 -1.76 16 7 C 0.51 11.79 7.11 87.65 0.62 12.41 16 8 O -0.57 -17.03 10.76 -3.01 -0.03 -17.06 16 9 N -0.61 -14.10 2.96 -817.95 -2.43 -16.53 16 10 C 0.12 2.11 6.13 86.51 0.53 2.64 16 11 C -0.11 -2.54 5.12 30.80 0.16 -2.39 16 12 C 0.11 3.50 0.68 -10.72 -0.01 3.49 16 13 C -0.14 -4.40 4.33 30.67 0.13 -4.27 16 14 C 0.13 3.61 6.20 86.38 0.54 4.15 16 15 C 0.12 4.92 5.39 86.34 0.47 5.39 16 16 N -0.61 -29.92 2.55 -697.60 -1.78 -31.70 16 17 C -0.26 -13.94 9.64 84.03 0.81 -13.13 16 18 H 0.07 3.52 7.88 -2.91 -0.02 3.49 16 19 C -0.05 -2.72 4.94 84.86 0.42 -2.30 16 20 N -0.93 -54.77 11.18 21.65 0.24 -54.53 16 21 Si 0.96 44.66 29.59 68.60 2.03 46.69 16 22 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 23 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 24 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 25 C 0.15 7.05 5.44 86.35 0.47 7.52 16 26 C 0.05 1.88 6.60 72.08 0.48 2.36 16 27 O -0.38 -12.90 9.00 -148.98 -1.34 -14.24 16 28 H 0.10 1.27 5.69 -2.91 -0.02 1.25 16 29 H 0.11 1.00 8.06 -2.91 -0.02 0.98 16 30 H 0.12 1.24 8.06 -2.91 -0.02 1.21 16 31 H 0.06 1.51 5.51 -2.39 -0.01 1.49 16 32 H 0.05 0.97 7.50 -2.39 -0.02 0.96 16 33 H 0.06 0.96 7.50 -2.39 -0.02 0.94 16 34 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.06 1.55 5.51 -2.39 -0.01 1.54 16 37 H 0.12 1.28 7.71 -2.39 -0.02 1.26 16 38 H 0.11 1.30 7.93 -2.39 -0.02 1.28 16 39 H 0.08 1.49 7.82 -2.39 -0.02 1.47 16 40 H 0.12 1.29 5.94 -2.39 -0.01 1.28 16 41 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 43 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 44 H 0.06 2.40 6.16 -2.38 -0.01 2.39 16 45 H 0.07 2.30 7.01 -2.39 -0.02 2.29 16 46 H 0.06 1.86 7.83 -2.38 -0.02 1.84 16 47 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 48 H 0.06 2.33 7.95 -2.38 -0.02 2.32 16 49 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 50 H 0.00 -0.06 8.14 -2.39 -0.02 -0.07 16 51 H 0.06 3.31 6.17 -2.38 -0.01 3.29 16 52 H 0.10 3.30 8.14 -2.39 -0.02 3.28 16 53 H 0.05 1.71 6.29 -2.38 -0.02 1.69 16 Total: -1.00 -66.55 390.17 4.47 -62.08 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: 0.88 Total: 19.35 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: 6.90 Total: 5.94 kcal Atomic # 7 Polarization: -98.80 SS G_CDS: -3.96 Total: -102.76 kcal Atomic # 8 Polarization: -29.93 SS G_CDS: -1.37 Total: -31.30 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -66.55 4.47 -62.08 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001503723492.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.592 kcal (2) G-P(sol) polarization free energy of solvation -66.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds