Wall clock time and date at job start Tue Mar 31 2020 19:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50699 * 109.47388 * 2 1 4 4 C 1.50703 * 119.99729 * 275.00045 * 3 2 1 5 5 C 1.32988 * 120.00271 * 94.99985 * 3 2 1 6 6 C 1.47105 * 120.00174 * 172.12276 * 5 3 2 7 7 O 1.21619 * 119.99859 * 353.29791 * 6 5 3 8 8 N 1.34781 * 119.99790 * 173.29441 * 6 5 3 9 9 C 1.46932 * 120.57895 * 174.41844 * 8 6 5 10 10 C 1.53290 * 108.71447 * 125.84705 * 9 8 6 11 11 C 1.52430 * 109.41486 * 53.71685 * 10 9 8 12 12 C 1.53608 * 110.44272 * 62.95723 * 11 10 9 13 13 O 1.43887 * 107.11435 * 120.51057 * 12 11 10 14 14 C 1.44430 * 106.99906 * 333.63136 * 13 12 11 15 15 H 1.08994 * 110.60746 * 281.23023 * 14 13 12 16 16 C 1.52997 * 110.60454 * 158.25612 * 14 13 12 17 17 N 1.46504 * 109.47072 * 66.45987 * 16 14 13 18 18 C 1.36932 * 120.00204 * 179.97438 * 17 16 14 19 19 H 1.07998 * 119.99853 * 359.97438 * 18 17 16 20 20 C 1.38815 * 120.00091 * 179.97438 * 18 17 16 21 21 N 1.31618 * 119.99733 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00035 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47070 * 59.99997 * 22 20 18 24 24 H 1.48495 * 109.47108 * 179.97438 * 22 20 18 25 25 H 1.48505 * 109.47436 * 300.00158 * 22 20 18 26 26 C 1.54320 * 110.04816 * 178.04029 * 11 10 9 27 27 C 1.52425 * 110.97791 * 300.11645 * 11 10 9 28 28 C 1.46930 * 120.58825 * 354.44192 * 8 6 5 29 29 H 1.08998 * 109.46884 * 300.00320 * 1 2 3 30 30 H 1.09003 * 109.46985 * 59.99808 * 1 2 3 31 31 H 1.08993 * 109.47283 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47190 * 240.00122 * 2 1 3 33 33 H 1.08999 * 109.47405 * 119.99959 * 2 1 3 34 34 H 1.08998 * 109.46993 * 263.67456 * 4 3 2 35 35 H 1.08994 * 109.47463 * 23.67932 * 4 3 2 36 36 H 1.09006 * 109.47273 * 143.67639 * 4 3 2 37 37 H 1.07999 * 120.00109 * 352.12056 * 5 3 2 38 38 H 1.08997 * 109.59999 * 6.07959 * 9 8 6 39 39 H 1.09001 * 109.59739 * 245.61426 * 9 8 6 40 40 H 1.09000 * 109.48373 * 293.73033 * 10 9 8 41 41 H 1.08999 * 109.49304 * 173.70063 * 10 9 8 42 42 H 1.08997 * 109.90371 * 1.13981 * 12 11 10 43 43 H 1.09005 * 110.06238 * 239.96764 * 12 11 10 44 44 H 1.09003 * 109.46915 * 186.45253 * 16 14 13 45 45 H 1.08992 * 109.47381 * 306.45593 * 16 14 13 46 46 H 0.97000 * 119.99717 * 359.97438 * 17 16 14 47 47 H 0.96997 * 119.99684 * 180.02562 * 21 20 18 48 48 H 1.08999 * 110.92861 * 20.11514 * 26 11 10 49 49 H 1.08996 * 110.93046 * 143.77582 * 26 11 10 50 50 H 1.09004 * 109.47653 * 179.85523 * 27 11 10 51 51 H 1.08998 * 109.48109 * 299.88463 * 27 11 10 52 52 H 1.09002 * 109.59188 * 353.91458 * 28 8 6 53 53 H 1.08999 * 109.59426 * 114.37151 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.1763 2.1691 -1.3002 5 6 2.3487 2.0143 1.1473 6 6 3.0001 3.3332 1.1380 7 8 3.3597 3.8264 0.0861 8 7 3.1984 3.9950 2.2953 9 6 3.9549 5.2544 2.3161 10 6 3.0982 6.3318 2.9906 11 6 2.6407 5.8337 4.3567 12 6 3.8500 5.5966 5.2738 13 8 3.6830 6.4465 6.4228 14 6 2.8759 7.5687 6.0042 15 1 3.4801 8.2934 5.4585 16 6 2.2017 8.2265 7.2098 17 7 3.2213 8.8362 8.0671 18 6 2.8518 9.4878 9.2133 19 1 1.8086 9.5528 9.4852 20 6 3.8179 10.0650 10.0259 21 7 5.0893 9.9855 9.6949 22 14 3.3137 10.9546 11.5891 23 1 2.6052 10.0100 12.4897 24 1 4.5236 11.4771 12.2736 25 1 2.4114 12.0835 11.2473 26 6 1.8173 6.9268 5.0698 27 6 1.8147 4.5595 4.2244 28 6 2.6622 3.4696 3.5584 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.2077 2.1010 -1.6463 35 1 1.5130 1.7318 -2.0464 36 1 1.9124 3.2157 -1.1482 37 1 2.1273 1.5280 2.0859 38 1 4.1874 5.5581 1.2954 39 1 4.8786 5.1168 2.8783 40 1 2.2272 6.5444 2.3708 41 1 3.6873 7.2406 3.1138 42 1 4.7697 5.8570 4.7500 43 1 3.8836 4.5528 5.5860 44 1 1.5102 8.9953 6.8648 45 1 1.6542 7.4730 7.7759 46 1 4.1583 8.7782 7.8228 47 1 5.7645 10.3885 10.2629 48 1 1.4360 7.6557 4.3547 49 1 1.0039 6.4872 5.6469 50 1 1.5032 4.2240 5.2136 51 1 0.9340 4.7590 3.6139 52 1 2.0419 2.5962 3.3569 53 1 3.4848 3.1923 4.2175 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717634493.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:35 Heat of formation + Delta-G solvation = -81.296506 kcal Electronic energy + Delta-G solvation = -29696.145266 eV Core-core repulsion = 25760.113778 eV Total energy + Delta-G solvation = -3936.031488 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.87992 -40.59494 -38.19460 -36.95515 -36.35577 -34.46091 -33.50864 -32.55763 -31.60631 -31.11669 -29.08626 -27.94075 -26.78127 -25.43139 -24.96053 -24.28902 -23.70091 -22.11137 -21.55030 -19.83884 -19.18937 -18.76494 -18.34694 -17.30486 -16.80815 -16.71849 -16.53292 -16.23120 -16.08734 -15.59835 -15.39059 -15.17777 -15.10837 -14.86545 -14.62527 -14.36695 -14.28496 -13.96626 -13.84697 -13.67537 -13.43100 -13.39044 -13.07748 -13.00398 -12.89318 -12.72118 -12.65541 -12.37925 -12.32137 -12.27190 -12.17463 -12.09043 -11.89158 -11.73312 -11.49749 -11.34151 -11.27808 -10.95841 -10.54010 -10.53245 -10.12752 -9.51531 -9.00598 -7.93808 -5.23642 0.40505 1.46690 1.51105 1.57207 2.04780 2.28291 2.56271 2.96296 3.39247 3.40513 3.51760 3.58952 3.78117 3.85545 3.89224 4.02053 4.06625 4.16295 4.21607 4.24433 4.34263 4.36088 4.37747 4.44654 4.53092 4.55723 4.63059 4.65712 4.70550 4.73417 4.78443 4.82345 4.84341 4.89225 4.93162 4.98246 5.02067 5.04653 5.08669 5.11447 5.14554 5.20799 5.27177 5.29839 5.38096 5.47432 5.53205 5.57728 5.68134 6.09623 6.27281 6.46903 7.21464 7.32948 8.08937 8.32732 9.29818 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.032796 B = 0.001901 C = 0.001859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.569134 B =14728.991935 C =15060.972815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.095 4.095 3 C -0.022 4.022 4 C -0.121 4.121 5 C -0.246 4.246 6 C 0.539 3.461 7 O -0.582 6.582 8 N -0.607 5.607 9 C 0.111 3.889 10 C -0.112 4.112 11 C -0.080 4.080 12 C 0.048 3.952 13 O -0.395 6.395 14 C 0.076 3.924 15 H 0.058 0.942 16 C 0.157 3.843 17 N -0.744 5.744 18 C -0.250 4.250 19 H 0.078 0.922 20 C -0.079 4.079 21 N -0.971 5.971 22 Si 0.979 3.021 23 H -0.277 1.277 24 H -0.295 1.295 25 H -0.275 1.275 26 C -0.126 4.126 27 C -0.113 4.113 28 C 0.102 3.898 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.153 0.847 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.055 0.945 43 H 0.095 0.905 44 H 0.042 0.958 45 H 0.023 0.977 46 H 0.373 0.627 47 H 0.251 0.749 48 H 0.094 0.906 49 H 0.087 0.913 50 H 0.090 0.910 51 H 0.077 0.923 52 H 0.113 0.887 53 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.242 -22.666 -22.204 33.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.132 4.132 3 C -0.024 4.024 4 C -0.177 4.177 5 C -0.267 4.267 6 C 0.332 3.668 7 O -0.465 6.465 8 N -0.339 5.339 9 C -0.011 4.011 10 C -0.150 4.150 11 C -0.081 4.081 12 C -0.028 4.028 13 O -0.315 6.315 14 C 0.019 3.981 15 H 0.076 0.924 16 C 0.030 3.970 17 N -0.387 5.387 18 C -0.381 4.381 19 H 0.096 0.904 20 C -0.271 4.271 21 N -0.621 5.621 22 Si 0.807 3.193 23 H -0.203 1.203 24 H -0.221 1.221 25 H -0.201 1.201 26 C -0.164 4.164 27 C -0.151 4.151 28 C -0.019 4.019 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.171 0.829 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.073 0.927 43 H 0.113 0.887 44 H 0.059 0.941 45 H 0.041 0.959 46 H 0.205 0.795 47 H 0.060 0.940 48 H 0.112 0.888 49 H 0.106 0.894 50 H 0.109 0.891 51 H 0.095 0.905 52 H 0.131 0.869 53 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.097 -22.375 -22.396 33.229 hybrid contribution 0.629 1.028 0.799 1.447 sum -9.468 -21.347 -21.597 31.808 Atomic orbital electron populations 1.21727 0.93538 1.02894 1.02251 1.20829 0.97094 0.90777 1.04470 1.22824 0.89032 0.95812 0.94684 1.21036 1.02013 0.99990 0.94657 1.22546 1.08162 0.95679 1.00267 1.19076 0.78946 0.86091 0.82669 1.90738 1.53971 1.70299 1.31479 1.48055 1.54281 1.23581 1.07934 1.21573 0.94249 0.83516 1.01800 1.21824 1.00508 0.98015 0.94687 1.21410 0.95250 0.96460 0.94961 1.23471 0.97213 0.95634 0.86503 1.89047 1.72952 1.35491 1.33971 1.23297 0.91632 0.88686 0.94529 0.92449 1.20893 0.91470 0.94410 0.90198 1.42515 1.05485 1.65478 1.25183 1.19656 0.93083 1.26048 0.99338 0.90413 1.25665 0.95312 1.03237 1.02914 1.69847 1.00257 1.51415 1.40629 0.85132 0.76501 0.78480 0.79147 1.20332 1.22105 1.20070 1.23136 0.97588 0.97767 0.97929 1.21853 0.97981 0.93072 1.02223 1.22078 0.98494 0.97351 0.84009 0.92479 0.92708 0.90812 0.89451 0.89414 0.91467 0.90861 0.91884 0.82933 0.90215 0.90969 0.90893 0.90715 0.92698 0.88719 0.94061 0.95926 0.79529 0.94023 0.88791 0.89404 0.89127 0.90450 0.86902 0.90347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.89 71.98 0.71 -0.22 16 2 C -0.09 -0.70 6.08 29.85 0.18 -0.52 16 3 C -0.02 -0.29 5.36 -17.62 -0.09 -0.38 16 4 C -0.12 -1.96 8.45 71.24 0.60 -1.36 16 5 C -0.25 -3.56 8.80 23.43 0.21 -3.35 16 6 C 0.54 11.25 7.47 86.57 0.65 11.89 16 7 O -0.58 -16.12 12.74 -4.09 -0.05 -16.17 16 8 N -0.61 -10.86 2.96 -822.77 -2.44 -13.30 16 9 C 0.11 2.18 6.14 86.39 0.53 2.71 16 10 C -0.11 -2.13 4.59 30.50 0.14 -1.99 16 11 C -0.08 -1.57 0.61 -51.91 -0.03 -1.60 16 12 C 0.05 1.20 6.15 72.19 0.44 1.64 16 13 O -0.39 -14.41 11.22 -148.98 -1.67 -16.08 16 14 C 0.08 2.57 3.38 31.32 0.11 2.68 16 15 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 16 C 0.16 6.54 6.00 86.38 0.52 7.06 16 17 N -0.74 -40.39 5.59 -343.46 -1.92 -42.30 16 18 C -0.25 -14.55 9.99 84.04 0.84 -13.71 16 19 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 20 C -0.08 -4.73 5.50 84.86 0.47 -4.26 16 21 N -0.97 -61.90 13.06 21.65 0.28 -61.62 16 22 Si 0.98 47.28 29.55 68.60 2.03 49.31 16 23 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 24 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 25 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 26 C -0.13 -2.92 5.67 31.76 0.18 -2.74 16 27 C -0.11 -1.62 4.63 30.50 0.14 -1.48 16 28 C 0.10 1.29 6.00 86.39 0.52 1.81 16 29 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.07 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.09 0.48 8.04 -2.39 -0.02 0.46 16 34 H 0.07 1.25 7.98 -2.39 -0.02 1.23 16 35 H 0.07 0.86 8.09 -2.39 -0.02 0.84 16 36 H 0.06 1.35 6.27 -2.38 -0.01 1.33 16 37 H 0.15 1.34 6.09 -2.91 -0.02 1.32 16 38 H 0.08 1.80 6.99 -2.39 -0.02 1.79 16 39 H 0.07 1.36 6.90 -2.39 -0.02 1.35 16 40 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.05 1.35 6.61 -2.39 -0.02 1.34 16 43 H 0.09 2.02 6.45 -2.38 -0.02 2.00 16 44 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.37 21.94 7.67 -92.71 -0.71 21.23 16 47 H 0.25 15.45 8.31 -92.71 -0.77 14.68 16 48 H 0.09 1.90 7.83 -2.39 -0.02 1.89 16 49 H 0.09 1.93 7.75 -2.39 -0.02 1.91 16 50 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 51 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 52 H 0.11 0.89 5.44 -2.39 -0.01 0.88 16 53 H 0.08 0.93 6.80 -2.39 -0.02 0.92 16 Total: -1.00 -75.57 405.76 2.52 -73.06 By element: Atomic # 1 Polarization: 30.76 SS G_CDS: 0.18 Total: 30.94 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: 6.11 Total: -3.84 kcal Atomic # 7 Polarization: -113.14 SS G_CDS: -4.07 Total: -117.22 kcal Atomic # 8 Polarization: -30.53 SS G_CDS: -1.72 Total: -32.25 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 2.03 Total: 49.31 kcal Total: -75.57 2.52 -73.06 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717634493.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.240 kcal (2) G-P(sol) polarization free energy of solvation -75.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds