Wall clock time and date at job start Tue Mar 31 2020 19:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50703 * 109.47099 * 2 1 4 4 C 1.50701 * 119.99688 * 264.87659 * 3 2 1 5 5 C 1.32993 * 120.00229 * 84.87794 * 3 2 1 6 6 C 1.47100 * 119.99943 * 352.77614 * 5 3 2 7 7 O 1.21610 * 120.00091 * 353.21311 * 6 5 3 8 8 N 1.34776 * 119.99718 * 173.21382 * 6 5 3 9 9 C 1.46932 * 120.58309 * 175.19140 * 8 6 5 10 10 C 1.53286 * 108.72007 * 125.80027 * 9 8 6 11 11 C 1.52435 * 109.41321 * 53.71438 * 10 9 8 12 12 C 1.53599 * 110.43763 * 62.96199 * 11 10 9 13 13 O 1.43883 * 107.11346 * 120.50590 * 12 11 10 14 14 C 1.44428 * 107.00147 * 333.63180 * 13 12 11 15 15 H 1.08992 * 110.60338 * 281.22548 * 14 13 12 16 16 C 1.53004 * 110.60492 * 158.25509 * 14 13 12 17 17 N 1.46501 * 109.46694 * 66.45690 * 16 14 13 18 18 C 1.36945 * 119.99509 * 179.97438 * 17 16 14 19 19 H 1.08000 * 120.00041 * 0.02562 * 18 17 16 20 20 C 1.38806 * 119.99688 * 180.02562 * 18 17 16 21 21 N 1.31619 * 120.00351 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99684 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47225 * 59.99853 * 22 20 18 24 24 H 1.48506 * 109.47220 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47368 * 299.99808 * 22 20 18 26 26 C 1.54313 * 110.04493 * 178.04042 * 11 10 9 27 27 C 1.52414 * 110.98150 * 300.11979 * 11 10 9 28 28 C 1.46925 * 120.58750 * 355.16446 * 8 6 5 29 29 H 1.09004 * 109.47223 * 300.00361 * 1 2 3 30 30 H 1.09002 * 109.47217 * 59.99990 * 1 2 3 31 31 H 1.08994 * 109.47365 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46935 * 239.99995 * 2 1 3 33 33 H 1.08996 * 109.46941 * 119.99674 * 2 1 3 34 34 H 1.09000 * 109.47580 * 270.00211 * 4 3 2 35 35 H 1.09005 * 109.47411 * 30.00100 * 4 3 2 36 36 H 1.09003 * 109.47178 * 150.00159 * 4 3 2 37 37 H 1.08001 * 119.99799 * 172.77864 * 5 3 2 38 38 H 1.09003 * 109.59633 * 6.03089 * 9 8 6 39 39 H 1.08992 * 109.59829 * 245.57348 * 9 8 6 40 40 H 1.08999 * 109.48103 * 293.73787 * 10 9 8 41 41 H 1.08991 * 109.48355 * 173.69971 * 10 9 8 42 42 H 1.09006 * 109.90944 * 1.13736 * 12 11 10 43 43 H 1.09002 * 110.06879 * 239.96370 * 12 11 10 44 44 H 1.09001 * 109.46977 * 186.45433 * 16 14 13 45 45 H 1.08994 * 109.47050 * 306.45713 * 16 14 13 46 46 H 0.96997 * 120.00610 * 359.97438 * 17 16 14 47 47 H 0.97004 * 119.99919 * 180.02562 * 21 20 18 48 48 H 1.09002 * 110.92840 * 20.12212 * 26 11 10 49 49 H 1.08997 * 110.93141 * 143.78291 * 26 11 10 50 50 H 1.08996 * 109.48477 * 179.85484 * 27 11 10 51 51 H 1.09000 * 109.48396 * 299.88707 * 27 11 10 52 52 H 1.09001 * 109.59921 * 353.96367 * 28 8 6 53 53 H 1.08999 * 109.59304 * 114.26458 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3933 2.0923 -1.2999 5 6 2.1570 2.0821 1.1471 6 6 1.6576 1.4879 2.3966 7 8 1.0221 0.4515 2.3656 8 7 1.9043 2.0921 3.5758 9 6 1.3238 1.5686 4.8200 10 6 2.4539 1.3296 5.8277 11 6 3.2698 2.6075 5.9864 12 6 2.3977 3.7324 6.5637 13 8 3.0056 4.1474 7.8000 14 6 3.7458 3.0157 8.3073 15 1 3.0752 2.3022 8.7860 16 6 4.8308 3.4757 9.2832 17 7 4.2031 4.0415 10.4799 18 6 4.9814 4.5216 11.4992 19 1 6.0579 4.4836 11.4207 20 6 4.3867 5.0572 12.6334 21 7 3.0748 5.1040 12.7289 22 14 5.4484 5.7129 14.0235 23 1 6.3062 6.8131 13.5146 24 1 4.5777 6.2273 15.1110 25 1 6.3052 4.6201 14.5498 26 6 4.3823 2.3979 7.0350 27 6 3.8788 3.0349 4.6562 28 6 2.7588 3.2856 3.6400 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.4454 1.9131 -1.5217 35 1 1.7784 1.6849 -2.1025 36 1 2.2174 3.1648 -1.2161 37 1 2.6250 3.0554 1.1612 38 1 0.8105 0.6287 4.6167 39 1 0.6180 2.2924 5.2271 40 1 3.0994 0.5288 5.4669 41 1 2.0286 1.0479 6.7908 42 1 1.3900 3.3616 6.7517 43 1 2.3606 4.5711 5.8685 44 1 5.4500 2.6243 9.5657 45 1 5.4514 4.2338 8.8055 46 1 3.2363 4.0759 10.5503 47 1 2.6593 5.4786 13.5213 48 1 4.5875 1.3370 7.1782 49 1 5.2887 2.9338 6.7535 50 1 4.4535 3.9503 4.7969 51 1 4.5349 2.2469 4.2868 52 1 3.1921 3.4783 2.6586 53 1 2.1644 4.1443 3.9522 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717634494.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:39 Heat of formation + Delta-G solvation = -55.313769 kcal Electronic energy + Delta-G solvation = -29862.319056 eV Core-core repulsion = 25927.414264 eV Total energy + Delta-G solvation = -3934.904792 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.01216 -39.72123 -37.33004 -35.96719 -34.48136 -33.51173 -31.73378 -31.60629 -31.05887 -29.62057 -28.46845 -26.97008 -25.29535 -24.26864 -23.91968 -23.42893 -22.33303 -20.89063 -20.71059 -19.01406 -18.03746 -17.61329 -17.04351 -16.11446 -16.09103 -15.62237 -15.36639 -15.10845 -14.91020 -14.61827 -14.41830 -14.06206 -13.90313 -13.81881 -13.42857 -13.27060 -13.12846 -13.09378 -12.97496 -12.69563 -12.59550 -12.49232 -12.22993 -12.04277 -11.78712 -11.57393 -11.38975 -11.31823 -11.21438 -11.07022 -10.87784 -10.76727 -10.49428 -10.43384 -10.39437 -9.98402 -9.69961 -9.61416 -9.47500 -9.26188 -8.82801 -8.73619 -6.85019 -5.69200 -2.97852 1.04712 2.77709 3.02773 3.48000 3.51731 3.53306 4.10727 4.20561 4.31435 4.37391 4.44108 4.59100 4.64782 4.75188 4.82303 4.92774 4.99795 5.03688 5.04713 5.08034 5.11710 5.23301 5.27751 5.31757 5.34841 5.37917 5.41831 5.46513 5.50477 5.56936 5.62866 5.67272 5.72220 5.77415 5.82095 5.88174 5.90368 5.96452 6.05111 6.08309 6.10602 6.15162 6.17949 6.24941 6.36849 6.40545 6.60690 6.79135 7.20855 7.34471 7.73907 8.01304 8.49138 9.60325 10.19000 10.54607 11.53525 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.037326 B = 0.001911 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.975037 B =14649.694413 C =14890.904344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.096 4.096 3 C -0.027 4.027 4 C -0.128 4.128 5 C -0.238 4.238 6 C 0.546 3.454 7 O -0.538 6.538 8 N -0.607 5.607 9 C 0.110 3.890 10 C -0.119 4.119 11 C -0.091 4.091 12 C 0.053 3.947 13 O -0.357 6.357 14 C 0.074 3.926 15 H 0.068 0.932 16 C 0.161 3.839 17 N -0.728 5.728 18 C -0.240 4.240 19 H 0.069 0.931 20 C -0.014 4.014 21 N -0.932 5.932 22 Si 0.908 3.092 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C -0.138 4.138 27 C -0.118 4.118 28 C 0.103 3.897 29 H 0.072 0.928 30 H 0.041 0.959 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.093 0.907 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.128 0.872 38 H 0.094 0.906 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.080 0.920 42 H 0.055 0.945 43 H 0.079 0.921 44 H 0.030 0.970 45 H 0.025 0.975 46 H 0.387 0.613 47 H 0.255 0.745 48 H 0.078 0.922 49 H 0.080 0.920 50 H 0.082 0.918 51 H 0.070 0.930 52 H 0.088 0.912 53 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.265 -8.272 -29.891 31.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.133 4.133 3 C -0.029 4.029 4 C -0.184 4.184 5 C -0.258 4.258 6 C 0.338 3.662 7 O -0.418 6.418 8 N -0.340 5.340 9 C -0.012 4.012 10 C -0.157 4.157 11 C -0.092 4.092 12 C -0.024 4.024 13 O -0.276 6.276 14 C 0.016 3.984 15 H 0.086 0.914 16 C 0.033 3.967 17 N -0.373 5.373 18 C -0.371 4.371 19 H 0.087 0.913 20 C -0.210 4.210 21 N -0.580 5.580 22 Si 0.739 3.261 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.176 4.176 27 C -0.156 4.156 28 C -0.019 4.019 29 H 0.091 0.909 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.111 0.889 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.146 0.854 38 H 0.112 0.888 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.098 0.902 42 H 0.073 0.927 43 H 0.097 0.903 44 H 0.048 0.952 45 H 0.043 0.957 46 H 0.221 0.779 47 H 0.065 0.935 48 H 0.097 0.903 49 H 0.098 0.902 50 H 0.100 0.900 51 H 0.088 0.912 52 H 0.106 0.894 53 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.493 -8.547 -29.680 30.987 hybrid contribution 0.384 0.413 0.801 0.980 sum -2.108 -8.134 -28.879 30.077 Atomic orbital electron populations 1.21619 0.94040 1.01758 1.01757 1.20847 0.97299 0.92318 1.02823 1.22613 0.90176 0.95724 0.94350 1.21012 1.02342 1.00593 0.94485 1.22454 1.08369 1.02613 0.92384 1.18548 0.80011 0.83814 0.83801 1.90734 1.41318 1.23036 1.86700 1.47981 1.49697 1.29462 1.06878 1.21658 0.95472 1.00739 0.83353 1.21896 0.97338 0.96879 0.99607 1.21489 0.96124 0.95892 0.95666 1.23245 0.95785 0.96209 0.87169 1.89094 1.67694 1.34812 1.35957 1.23433 0.93409 0.87822 0.93748 0.91437 1.20697 0.92622 0.96203 0.87207 1.42275 1.06407 1.73068 1.15502 1.19186 0.90304 1.32396 0.95236 0.91293 1.24748 0.95676 1.02050 0.98572 1.69669 1.07778 1.51317 1.29276 0.86260 0.79140 0.78750 0.81971 1.21312 1.21702 1.21319 1.23190 0.98105 1.01854 0.94440 1.21870 0.97345 1.02539 0.93866 1.21910 0.92112 0.87381 1.00546 0.90907 0.94028 0.92859 0.92311 0.88860 0.90389 0.90853 0.91056 0.85431 0.88767 0.91250 0.91184 0.90190 0.92684 0.90333 0.95222 0.95698 0.77899 0.93521 0.90321 0.90179 0.89953 0.91161 0.89386 0.90984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.19 9.31 37.16 0.35 -0.84 16 2 C -0.10 -0.81 5.34 -27.88 -0.15 -0.96 16 3 C -0.03 -0.20 5.36 -101.17 -0.54 -0.74 16 4 C -0.13 -0.60 10.02 36.01 0.36 -0.24 16 5 C -0.24 -1.91 8.83 -37.81 -0.33 -2.25 16 6 C 0.55 5.71 7.45 -12.67 -0.09 5.62 16 7 O -0.54 -6.87 10.43 5.27 0.05 -6.82 16 8 N -0.61 -5.71 2.96 -174.04 -0.52 -6.23 16 9 C 0.11 1.08 6.13 -3.66 -0.02 1.05 16 10 C -0.12 -1.17 4.59 -26.87 -0.12 -1.30 16 11 C -0.09 -0.96 0.61 -154.10 -0.09 -1.06 16 12 C 0.05 0.68 6.15 37.47 0.23 0.91 16 13 O -0.36 -6.49 11.22 -35.23 -0.40 -6.89 16 14 C 0.07 1.25 3.38 -25.62 -0.09 1.16 16 15 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 16 C 0.16 3.35 6.00 -4.04 -0.02 3.33 16 17 N -0.73 -19.42 5.59 -59.91 -0.33 -19.76 16 18 C -0.24 -6.96 9.99 -15.06 -0.15 -7.11 16 19 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 20 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 21 N -0.93 -29.10 13.06 55.49 0.72 -28.37 16 22 Si 0.91 22.89 29.55 -169.99 -5.02 17.87 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 26 C -0.14 -1.71 5.67 -24.93 -0.14 -1.85 16 27 C -0.12 -1.01 4.63 -26.88 -0.12 -1.13 16 28 C 0.10 0.78 6.00 -3.66 -0.02 0.76 16 29 H 0.07 0.80 6.08 -51.93 -0.32 0.48 16 30 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 33 H 0.09 0.99 6.13 -51.93 -0.32 0.67 16 34 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 35 H 0.07 0.30 8.12 -51.93 -0.42 -0.12 16 36 H 0.07 0.28 8.07 -51.93 -0.42 -0.13 16 37 H 0.13 0.76 6.07 -52.49 -0.32 0.44 16 38 H 0.09 1.01 6.99 -51.93 -0.36 0.65 16 39 H 0.07 0.66 6.90 -51.93 -0.36 0.30 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.06 0.69 6.61 -51.93 -0.34 0.34 16 43 H 0.08 0.90 6.46 -51.93 -0.34 0.57 16 44 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 46 H 0.39 11.01 7.67 -40.82 -0.31 10.69 16 47 H 0.25 7.68 8.31 -40.82 -0.34 7.34 16 48 H 0.08 0.88 7.83 -51.93 -0.41 0.47 16 49 H 0.08 0.97 7.75 -51.93 -0.40 0.57 16 50 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 51 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 52 H 0.09 0.51 5.42 -51.93 -0.28 0.23 16 53 H 0.07 0.53 6.82 -51.93 -0.35 0.18 16 LS Contribution 401.67 15.07 6.05 6.05 Total: -1.00 -33.89 401.67 -9.65 -43.54 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -9.14 Total: 5.77 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: -1.07 Total: -5.16 kcal Atomic # 7 Polarization: -54.24 SS G_CDS: -0.13 Total: -54.36 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: -0.34 Total: -13.71 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.02 Total: 17.87 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.89 -9.65 -43.54 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717634494.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.774 kcal (2) G-P(sol) polarization free energy of solvation -33.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds