Wall clock time and date at job start Tue Mar 31 2020 19:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50703 * 109.47099 * 2 1 4 4 C 1.50701 * 119.99688 * 264.87659 * 3 2 1 5 5 C 1.32993 * 120.00229 * 84.87794 * 3 2 1 6 6 C 1.47100 * 119.99943 * 352.77614 * 5 3 2 7 7 O 1.21610 * 120.00091 * 353.21311 * 6 5 3 8 8 N 1.34776 * 119.99718 * 173.21382 * 6 5 3 9 9 C 1.46932 * 120.58309 * 175.19140 * 8 6 5 10 10 C 1.53286 * 108.72007 * 125.80027 * 9 8 6 11 11 C 1.52435 * 109.41321 * 53.71438 * 10 9 8 12 12 C 1.53599 * 110.43763 * 62.96199 * 11 10 9 13 13 O 1.43883 * 107.11346 * 120.50590 * 12 11 10 14 14 C 1.44428 * 107.00147 * 333.63180 * 13 12 11 15 15 H 1.08992 * 110.60338 * 281.22548 * 14 13 12 16 16 C 1.53004 * 110.60492 * 158.25509 * 14 13 12 17 17 N 1.46501 * 109.46694 * 66.45690 * 16 14 13 18 18 C 1.36945 * 119.99509 * 179.97438 * 17 16 14 19 19 H 1.08000 * 120.00041 * 0.02562 * 18 17 16 20 20 C 1.38806 * 119.99688 * 180.02562 * 18 17 16 21 21 N 1.31619 * 120.00351 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99684 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47225 * 59.99853 * 22 20 18 24 24 H 1.48506 * 109.47220 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47368 * 299.99808 * 22 20 18 26 26 C 1.54313 * 110.04493 * 178.04042 * 11 10 9 27 27 C 1.52414 * 110.98150 * 300.11979 * 11 10 9 28 28 C 1.46925 * 120.58750 * 355.16446 * 8 6 5 29 29 H 1.09004 * 109.47223 * 300.00361 * 1 2 3 30 30 H 1.09002 * 109.47217 * 59.99990 * 1 2 3 31 31 H 1.08994 * 109.47365 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46935 * 239.99995 * 2 1 3 33 33 H 1.08996 * 109.46941 * 119.99674 * 2 1 3 34 34 H 1.09000 * 109.47580 * 270.00211 * 4 3 2 35 35 H 1.09005 * 109.47411 * 30.00100 * 4 3 2 36 36 H 1.09003 * 109.47178 * 150.00159 * 4 3 2 37 37 H 1.08001 * 119.99799 * 172.77864 * 5 3 2 38 38 H 1.09003 * 109.59633 * 6.03089 * 9 8 6 39 39 H 1.08992 * 109.59829 * 245.57348 * 9 8 6 40 40 H 1.08999 * 109.48103 * 293.73787 * 10 9 8 41 41 H 1.08991 * 109.48355 * 173.69971 * 10 9 8 42 42 H 1.09006 * 109.90944 * 1.13736 * 12 11 10 43 43 H 1.09002 * 110.06879 * 239.96370 * 12 11 10 44 44 H 1.09001 * 109.46977 * 186.45433 * 16 14 13 45 45 H 1.08994 * 109.47050 * 306.45713 * 16 14 13 46 46 H 0.96997 * 120.00610 * 359.97438 * 17 16 14 47 47 H 0.97004 * 119.99919 * 180.02562 * 21 20 18 48 48 H 1.09002 * 110.92840 * 20.12212 * 26 11 10 49 49 H 1.08997 * 110.93141 * 143.78291 * 26 11 10 50 50 H 1.08996 * 109.48477 * 179.85484 * 27 11 10 51 51 H 1.09000 * 109.48396 * 299.88707 * 27 11 10 52 52 H 1.09001 * 109.59921 * 353.96367 * 28 8 6 53 53 H 1.08999 * 109.59304 * 114.26458 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3933 2.0923 -1.2999 5 6 2.1570 2.0821 1.1471 6 6 1.6576 1.4879 2.3966 7 8 1.0221 0.4515 2.3656 8 7 1.9043 2.0921 3.5758 9 6 1.3238 1.5686 4.8200 10 6 2.4539 1.3296 5.8277 11 6 3.2698 2.6075 5.9864 12 6 2.3977 3.7324 6.5637 13 8 3.0056 4.1474 7.8000 14 6 3.7458 3.0157 8.3073 15 1 3.0752 2.3022 8.7860 16 6 4.8308 3.4757 9.2832 17 7 4.2031 4.0415 10.4799 18 6 4.9814 4.5216 11.4992 19 1 6.0579 4.4836 11.4207 20 6 4.3867 5.0572 12.6334 21 7 3.0748 5.1040 12.7289 22 14 5.4484 5.7129 14.0235 23 1 6.3062 6.8131 13.5146 24 1 4.5777 6.2273 15.1110 25 1 6.3052 4.6201 14.5498 26 6 4.3823 2.3979 7.0350 27 6 3.8788 3.0349 4.6562 28 6 2.7588 3.2856 3.6400 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.4454 1.9131 -1.5217 35 1 1.7784 1.6849 -2.1025 36 1 2.2174 3.1648 -1.2161 37 1 2.6250 3.0554 1.1612 38 1 0.8105 0.6287 4.6167 39 1 0.6180 2.2924 5.2271 40 1 3.0994 0.5288 5.4669 41 1 2.0286 1.0479 6.7908 42 1 1.3900 3.3616 6.7517 43 1 2.3606 4.5711 5.8685 44 1 5.4500 2.6243 9.5657 45 1 5.4514 4.2338 8.8055 46 1 3.2363 4.0759 10.5503 47 1 2.6593 5.4786 13.5213 48 1 4.5875 1.3370 7.1782 49 1 5.2887 2.9338 6.7535 50 1 4.4535 3.9503 4.7969 51 1 4.5349 2.2469 4.2868 52 1 3.1921 3.4783 2.6586 53 1 2.1644 4.1443 3.9522 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717634494.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:38 Heat of formation + Delta-G solvation = -76.357706 kcal Electronic energy + Delta-G solvation = -29863.231590 eV Core-core repulsion = 25927.414264 eV Total energy + Delta-G solvation = -3935.817326 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.88016 -40.63956 -38.25423 -36.71347 -36.31836 -34.48119 -33.51069 -32.45684 -31.73005 -31.06362 -29.15241 -27.97873 -26.78059 -25.21435 -24.85481 -24.25318 -23.81640 -22.11790 -21.64700 -19.83020 -19.18698 -18.73212 -18.33282 -17.30410 -16.85640 -16.71688 -16.53411 -16.23875 -16.00115 -15.74736 -15.31791 -15.16394 -15.10101 -14.63490 -14.55130 -14.40425 -14.21238 -14.01500 -13.77436 -13.65988 -13.50512 -13.25226 -13.11254 -13.04626 -12.86135 -12.82135 -12.72148 -12.43888 -12.31086 -12.22065 -12.11323 -11.93842 -11.91439 -11.67473 -11.46794 -11.32895 -11.26136 -10.95927 -10.53206 -10.44872 -10.06831 -9.47314 -9.00712 -7.93914 -5.23844 0.44138 1.46589 1.51040 1.57111 2.07778 2.32138 2.56146 2.96296 3.39133 3.41152 3.53806 3.62615 3.81085 3.82044 3.89048 4.04295 4.07515 4.16938 4.22046 4.25729 4.35850 4.37431 4.45885 4.53542 4.53769 4.57423 4.64858 4.68202 4.69695 4.71923 4.78364 4.83400 4.86044 4.89190 4.93505 4.97761 5.01014 5.03637 5.08827 5.11293 5.19889 5.24478 5.29234 5.31146 5.42907 5.47298 5.53992 5.59398 5.75201 6.09600 6.27180 6.50738 7.27362 7.32820 8.08783 8.32526 9.29695 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.037326 B = 0.001911 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.975037 B =14649.694413 C =14890.904344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.098 4.098 3 C -0.023 4.023 4 C -0.125 4.125 5 C -0.248 4.248 6 C 0.536 3.464 7 O -0.570 6.570 8 N -0.607 5.607 9 C 0.113 3.887 10 C -0.112 4.112 11 C -0.080 4.080 12 C 0.048 3.952 13 O -0.395 6.395 14 C 0.076 3.924 15 H 0.057 0.943 16 C 0.157 3.843 17 N -0.744 5.744 18 C -0.249 4.249 19 H 0.078 0.922 20 C -0.079 4.079 21 N -0.971 5.971 22 Si 0.979 3.021 23 H -0.277 1.277 24 H -0.295 1.295 25 H -0.275 1.275 26 C -0.126 4.126 27 C -0.113 4.113 28 C 0.103 3.897 29 H 0.048 0.952 30 H 0.056 0.944 31 H 0.050 0.950 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.153 0.847 38 H 0.080 0.920 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.055 0.945 43 H 0.094 0.906 44 H 0.042 0.958 45 H 0.023 0.977 46 H 0.373 0.627 47 H 0.251 0.749 48 H 0.094 0.906 49 H 0.087 0.913 50 H 0.089 0.911 51 H 0.077 0.923 52 H 0.113 0.887 53 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.563 -7.847 -32.165 33.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.135 4.135 3 C -0.025 4.025 4 C -0.181 4.181 5 C -0.269 4.269 6 C 0.330 3.670 7 O -0.453 6.453 8 N -0.340 5.340 9 C -0.010 4.010 10 C -0.150 4.150 11 C -0.081 4.081 12 C -0.028 4.028 13 O -0.315 6.315 14 C 0.019 3.981 15 H 0.075 0.925 16 C 0.030 3.970 17 N -0.387 5.387 18 C -0.381 4.381 19 H 0.096 0.904 20 C -0.271 4.271 21 N -0.622 5.622 22 Si 0.807 3.193 23 H -0.203 1.203 24 H -0.221 1.221 25 H -0.201 1.201 26 C -0.164 4.164 27 C -0.151 4.151 28 C -0.019 4.019 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.110 0.890 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.170 0.830 38 H 0.099 0.901 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.073 0.927 43 H 0.112 0.888 44 H 0.059 0.941 45 H 0.041 0.959 46 H 0.205 0.795 47 H 0.060 0.940 48 H 0.112 0.888 49 H 0.106 0.894 50 H 0.108 0.892 51 H 0.096 0.904 52 H 0.131 0.869 53 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.746 -8.128 -31.990 33.015 hybrid contribution -0.179 0.231 1.439 1.468 sum -0.925 -7.897 -30.551 31.568 Atomic orbital electron populations 1.21554 0.94549 1.01477 1.01202 1.20811 0.96882 0.93387 1.02377 1.22860 0.89026 0.95020 0.95586 1.21064 1.03231 1.00967 0.92864 1.22554 1.09329 1.03696 0.91291 1.19066 0.79690 0.83535 0.84756 1.90728 1.42800 1.24535 1.87193 1.48056 1.49671 1.29846 1.06380 1.21547 0.95451 1.00251 0.83771 1.21821 0.97253 0.96621 0.99328 1.21404 0.95116 0.95234 0.96300 1.23467 0.95891 0.97692 0.85755 1.89045 1.68350 1.35841 1.38248 1.23296 0.92491 0.87501 0.94852 0.92464 1.20893 0.93881 0.96008 0.86182 1.42518 1.05780 1.73423 1.16947 1.19657 0.91009 1.31566 0.95881 0.90407 1.25667 0.97004 1.03056 1.01419 1.69849 1.09650 1.52781 1.29880 0.85131 0.77383 0.78339 0.78399 1.20328 1.22106 1.20061 1.23135 0.98529 1.02412 0.92354 1.21845 0.97647 1.03056 0.92551 1.22056 0.91621 0.86598 1.01646 0.93334 0.92513 0.93095 0.90597 0.91405 0.89025 0.90125 0.89929 0.83004 0.90135 0.91151 0.90890 0.90806 0.92727 0.88762 0.94058 0.95935 0.79531 0.94017 0.88796 0.89428 0.89225 0.90446 0.86934 0.90501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.27 9.31 71.98 0.67 -1.60 16 2 C -0.10 -1.56 5.34 29.85 0.16 -1.40 16 3 C -0.02 -0.29 5.36 -17.61 -0.09 -0.39 16 4 C -0.13 -0.77 10.02 71.24 0.71 -0.05 16 5 C -0.25 -3.48 8.83 23.43 0.21 -3.27 16 6 C 0.54 10.79 7.45 86.57 0.65 11.43 16 7 O -0.57 -14.89 10.43 -4.06 -0.04 -14.94 16 8 N -0.61 -10.65 2.96 -822.80 -2.44 -13.08 16 9 C 0.11 2.17 6.13 86.39 0.53 2.70 16 10 C -0.11 -2.11 4.59 30.50 0.14 -1.97 16 11 C -0.08 -1.57 0.61 -51.92 -0.03 -1.60 16 12 C 0.05 1.21 6.15 72.18 0.44 1.65 16 13 O -0.40 -14.45 11.22 -148.98 -1.67 -16.12 16 14 C 0.08 2.58 3.38 31.32 0.11 2.68 16 15 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 16 C 0.16 6.55 6.00 86.38 0.52 7.07 16 17 N -0.74 -40.43 5.59 -343.45 -1.92 -42.34 16 18 C -0.25 -14.55 9.99 84.03 0.84 -13.71 16 19 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 20 C -0.08 -4.74 5.50 84.86 0.47 -4.27 16 21 N -0.97 -61.95 13.06 21.65 0.28 -61.66 16 22 Si 0.98 47.30 29.55 68.60 2.03 49.33 16 23 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 24 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 25 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 26 C -0.13 -2.93 5.67 31.76 0.18 -2.75 16 27 C -0.11 -1.62 4.63 30.50 0.14 -1.48 16 28 C 0.10 1.28 6.00 86.40 0.52 1.80 16 29 H 0.05 1.09 6.08 -2.38 -0.01 1.08 16 30 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.08 0.92 8.09 -2.39 -0.02 0.90 16 33 H 0.07 1.46 6.13 -2.39 -0.01 1.44 16 34 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 35 H 0.08 0.41 8.12 -2.38 -0.02 0.39 16 36 H 0.08 0.36 8.07 -2.39 -0.02 0.34 16 37 H 0.15 1.28 6.07 -2.91 -0.02 1.26 16 38 H 0.08 1.79 6.99 -2.39 -0.02 1.77 16 39 H 0.07 1.33 6.90 -2.39 -0.02 1.31 16 40 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.05 1.35 6.61 -2.38 -0.02 1.34 16 43 H 0.09 2.02 6.46 -2.39 -0.02 2.01 16 44 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.37 21.96 7.67 -92.71 -0.71 21.25 16 47 H 0.25 15.46 8.31 -92.71 -0.77 14.69 16 48 H 0.09 1.91 7.83 -2.39 -0.02 1.89 16 49 H 0.09 1.93 7.75 -2.39 -0.02 1.91 16 50 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 51 H 0.08 1.05 8.14 -2.39 -0.02 1.04 16 52 H 0.11 0.88 5.42 -2.39 -0.01 0.87 16 53 H 0.08 0.92 6.82 -2.39 -0.02 0.90 16 Total: -1.00 -75.06 401.67 2.58 -72.49 By element: Atomic # 1 Polarization: 31.32 SS G_CDS: 0.19 Total: 31.50 kcal Atomic # 6 Polarization: -11.32 SS G_CDS: 6.15 Total: -5.16 kcal Atomic # 7 Polarization: -113.02 SS G_CDS: -4.07 Total: -117.09 kcal Atomic # 8 Polarization: -29.35 SS G_CDS: -1.71 Total: -31.06 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 2.03 Total: 49.33 kcal Total: -75.06 2.58 -72.49 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717634494.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.872 kcal (2) G-P(sol) polarization free energy of solvation -75.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds