Wall clock time and date at job start Tue Mar 31 2020 19:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.47249 * 2 1 4 4 C 1.32988 * 119.99903 * 95.00035 * 3 2 1 5 5 C 1.47109 * 119.99878 * 171.59898 * 4 3 2 6 6 O 1.21616 * 119.99929 * 356.18790 * 5 4 3 7 7 N 1.34777 * 119.99968 * 176.18299 * 5 4 3 8 8 C 1.46933 * 120.64126 * 5.39350 * 7 5 4 9 9 C 1.53634 * 108.53370 * 126.29465 * 8 7 5 10 10 C 1.52997 * 109.27124 * 54.81116 * 9 8 7 11 11 C 1.52990 * 109.63471 * 298.65247 * 10 9 8 12 12 C 1.46934 * 120.64229 * 185.67641 * 7 5 4 13 13 C 1.53257 * 109.35822 * 178.71467 * 10 9 8 14 14 N 1.47153 * 108.40949 * 187.91074 * 13 10 9 15 15 C 1.36940 * 120.98868 * 230.49858 * 14 13 10 16 16 H 1.07991 * 119.99938 * 17.28815 * 15 14 13 17 17 C 1.38812 * 119.99697 * 197.29457 * 15 14 13 18 18 N 1.31620 * 120.00414 * 39.87230 * 17 15 14 19 19 Si 1.86800 * 119.99785 * 219.87656 * 17 15 14 20 20 H 1.48498 * 109.47512 * 94.99726 * 19 17 15 21 21 H 1.48504 * 109.46973 * 214.99599 * 19 17 15 22 22 H 1.48501 * 109.47362 * 334.99347 * 19 17 15 23 23 C 1.47154 * 118.02355 * 50.47200 * 14 13 10 24 24 C 1.53296 * 108.37693 * 309.40685 * 23 14 13 25 25 O 1.42896 * 109.55137 * 58.91289 * 10 9 8 26 26 C 1.50706 * 119.99989 * 275.00630 * 3 2 1 27 27 C 1.53003 * 109.46810 * 269.48569 * 26 3 2 28 28 H 1.08994 * 109.47128 * 60.00076 * 1 2 3 29 29 H 1.09005 * 109.46657 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46439 * 299.99693 * 1 2 3 31 31 H 1.09006 * 109.46905 * 240.00297 * 2 1 3 32 32 H 1.08992 * 109.47635 * 120.00490 * 2 1 3 33 33 H 1.07998 * 120.00678 * 351.88014 * 4 3 2 34 34 H 1.08994 * 109.59175 * 246.12651 * 8 7 5 35 35 H 1.09000 * 109.59116 * 6.56027 * 8 7 5 36 36 H 1.08994 * 109.63028 * 294.80849 * 9 8 7 37 37 H 1.08998 * 109.44365 * 174.69876 * 9 8 7 38 38 H 1.08997 * 109.49185 * 301.25519 * 11 10 9 39 39 H 1.08996 * 109.51237 * 181.18680 * 11 10 9 40 40 H 1.08996 * 109.58464 * 353.43780 * 12 7 5 41 41 H 1.08999 * 109.58526 * 113.72040 * 12 7 5 42 42 H 1.08996 * 109.67939 * 307.64199 * 13 10 9 43 43 H 1.08998 * 109.67973 * 68.14556 * 13 10 9 44 44 H 0.96997 * 120.00083 * 179.97438 * 18 17 15 45 45 H 1.09003 * 109.68497 * 69.12951 * 23 14 13 46 46 H 1.09010 * 109.68279 * 189.68558 * 23 14 13 47 47 H 1.09000 * 109.51511 * 172.27653 * 24 23 14 48 48 H 1.08994 * 109.51157 * 292.37786 * 24 23 14 49 49 H 1.08997 * 109.47181 * 29.48326 * 26 3 2 50 50 H 1.08996 * 109.47029 * 149.49265 * 26 3 2 51 51 H 1.08999 * 109.47035 * 179.97438 * 27 26 3 52 52 H 1.08997 * 109.46986 * 300.00389 * 27 26 3 53 53 H 1.09005 * 109.47061 * 60.00059 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3487 2.0142 1.1473 5 6 3.0105 3.3280 1.1379 6 8 3.3309 3.8399 0.0823 7 7 3.2616 3.9644 2.2991 8 6 2.9888 3.3098 3.5860 9 6 4.2677 3.3520 4.4362 10 6 4.7466 4.8001 4.5566 11 6 5.0725 5.3509 3.1670 12 6 3.8078 5.3284 2.3027 13 6 6.0042 4.8483 5.4310 14 7 6.3362 6.2582 5.6904 15 6 7.6016 6.7356 5.4761 16 1 8.2927 6.1770 4.8624 17 6 7.9961 7.9375 6.0477 18 7 7.6286 8.2338 7.2764 19 14 9.0483 9.1344 5.0732 20 1 8.1751 10.1407 4.4174 21 1 9.9939 9.8214 5.9892 22 1 9.8124 8.3926 4.0383 23 6 5.2677 7.1401 6.1865 24 6 4.0471 6.9817 5.2727 25 8 3.7219 5.5942 5.1577 26 6 2.1762 2.1692 -1.3002 27 6 3.5839 1.9538 -1.8595 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8898 33 1 2.1238 1.5297 2.0860 34 1 2.1864 3.8375 4.1015 35 1 2.6964 2.2739 3.4144 36 1 5.0430 2.7508 3.9614 37 1 4.0566 2.9550 5.4292 38 1 5.8415 4.7339 2.7023 39 1 5.4334 6.3755 3.2569 40 1 4.0563 5.6251 1.2837 41 1 3.0693 6.0166 2.7139 42 1 5.8152 4.3362 6.3744 43 1 6.8316 4.3656 4.9109 44 1 7.9046 9.0735 7.6759 45 1 5.0024 6.8582 7.2055 46 1 5.6081 8.1755 6.1683 47 1 3.2006 7.5198 5.6992 48 1 4.2758 7.3856 4.2865 49 1 1.4408 1.8002 -2.0151 50 1 2.0129 3.2329 -1.1271 51 1 3.6878 2.4947 -2.8001 52 1 4.3193 2.3227 -1.1446 53 1 3.7473 0.8900 -2.0326 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725010835.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:05 Heat of formation + Delta-G solvation = -52.976963 kcal Electronic energy + Delta-G solvation = -31084.783046 eV Core-core repulsion = 27149.979585 eV Total energy + Delta-G solvation = -3934.803461 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.65402 -40.46917 -37.99104 -36.96670 -36.13716 -33.97535 -33.09176 -32.73592 -32.48789 -30.72174 -29.94148 -28.23545 -26.00457 -25.05727 -24.76476 -24.15467 -24.00029 -22.60541 -21.11860 -20.10085 -18.96323 -18.75049 -18.37869 -16.93885 -16.87129 -16.69677 -16.32953 -16.22827 -15.88560 -15.74636 -15.47667 -15.29767 -15.12531 -14.75976 -14.62325 -14.45885 -14.22699 -14.06336 -13.60929 -13.54906 -13.38733 -13.22103 -13.14708 -12.86573 -12.84875 -12.76460 -12.54276 -12.50292 -12.31655 -12.19772 -12.09836 -12.05822 -11.77415 -11.72650 -11.62374 -11.48893 -11.00119 -10.79330 -10.36746 -10.33307 -10.05517 -9.46442 -8.89905 -8.03654 -5.21022 0.45219 1.40539 1.46966 1.54092 2.11045 2.34715 2.46261 2.86187 3.04286 3.48448 3.58839 3.78376 3.82934 3.91468 3.94431 4.08113 4.19732 4.30834 4.33393 4.40630 4.41958 4.45556 4.46865 4.54249 4.57515 4.64534 4.67605 4.72976 4.75941 4.81372 4.82886 4.85124 4.91062 4.96894 4.99659 5.02754 5.06798 5.10131 5.15170 5.20994 5.29398 5.33621 5.38954 5.41845 5.44337 5.58832 5.63736 5.65552 5.75866 6.17847 6.38478 6.57148 6.99462 7.29194 7.75004 8.27942 9.02561 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.021188 B = 0.002749 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.185393 B =10182.553285 C =10865.494584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.094 4.094 3 C -0.016 4.016 4 C -0.241 4.241 5 C 0.536 3.464 6 O -0.573 6.573 7 N -0.606 5.606 8 C 0.117 3.883 9 C -0.113 4.113 10 C 0.112 3.888 11 C -0.138 4.138 12 C 0.128 3.872 13 C 0.123 3.877 14 N -0.605 5.605 15 C -0.273 4.273 16 H 0.067 0.933 17 C -0.032 4.032 18 N -0.908 5.908 19 Si 0.933 3.067 20 H -0.286 1.286 21 H -0.297 1.297 22 H -0.271 1.271 23 C 0.141 3.859 24 C 0.053 3.947 25 O -0.375 6.375 26 C -0.102 4.102 27 C -0.127 4.127 28 H 0.053 0.947 29 H 0.074 0.926 30 H 0.056 0.944 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.154 0.846 34 H 0.076 0.924 35 H 0.117 0.883 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.074 0.926 41 H 0.067 0.933 42 H 0.019 0.981 43 H 0.059 0.941 44 H 0.253 0.747 45 H 0.004 0.996 46 H 0.054 0.946 47 H 0.107 0.893 48 H 0.048 0.952 49 H 0.076 0.924 50 H 0.073 0.927 51 H 0.051 0.949 52 H 0.038 0.962 53 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.230 -17.166 -12.879 26.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.131 4.131 3 C -0.018 4.018 4 C -0.261 4.261 5 C 0.330 3.670 6 O -0.456 6.456 7 N -0.338 5.338 8 C -0.005 4.005 9 C -0.152 4.152 10 C 0.071 3.929 11 C -0.177 4.177 12 C 0.005 3.995 13 C -0.002 4.002 14 N -0.329 5.329 15 C -0.402 4.402 16 H 0.085 0.915 17 C -0.230 4.230 18 N -0.552 5.552 19 Si 0.762 3.238 20 H -0.213 1.213 21 H -0.224 1.224 22 H -0.196 1.196 23 C 0.015 3.985 24 C -0.025 4.025 25 O -0.294 6.294 26 C -0.139 4.139 27 C -0.185 4.185 28 H 0.072 0.928 29 H 0.093 0.907 30 H 0.075 0.925 31 H 0.105 0.895 32 H 0.106 0.894 33 H 0.171 0.829 34 H 0.095 0.905 35 H 0.135 0.865 36 H 0.104 0.896 37 H 0.113 0.887 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.093 0.907 41 H 0.085 0.915 42 H 0.037 0.963 43 H 0.077 0.923 44 H 0.062 0.938 45 H 0.022 0.978 46 H 0.073 0.927 47 H 0.125 0.875 48 H 0.066 0.934 49 H 0.094 0.906 50 H 0.091 0.909 51 H 0.071 0.929 52 H 0.058 0.942 53 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -16.174 -16.856 -13.234 26.849 hybrid contribution 1.458 1.592 0.210 2.169 sum -14.716 -15.264 -13.024 24.883 Atomic orbital electron populations 1.21723 0.93522 1.02880 1.02196 1.20819 0.97108 0.90710 1.04435 1.22804 0.89026 0.95712 0.94291 1.22543 1.07705 0.95600 1.00302 1.19125 0.78941 0.86299 0.82671 1.90705 1.54477 1.69397 1.31012 1.48093 1.63376 1.15605 1.06730 1.21943 0.96919 0.99495 0.82133 1.21966 0.98685 0.92567 1.01957 1.21815 0.88062 0.92176 0.90852 1.22186 0.97565 1.02334 0.95571 1.21288 0.94665 0.83511 0.99993 1.21683 0.96165 0.85774 0.96601 1.44424 1.06418 1.04988 1.77098 1.19277 0.91572 1.04962 1.24354 0.91529 1.25253 1.00381 1.02187 0.95219 1.70471 1.50093 1.23594 1.11020 0.85763 0.78308 0.80344 0.79423 1.21326 1.22388 1.19604 1.21273 0.87963 0.95237 0.94025 1.23054 0.97815 0.82712 0.98936 1.87789 1.40984 1.18955 1.81719 1.20895 0.98011 1.00830 0.94183 1.21480 0.96010 1.00915 1.00054 0.92757 0.90724 0.92536 0.89478 0.89365 0.82897 0.90533 0.86546 0.89622 0.88709 0.91885 0.91610 0.90724 0.91490 0.96312 0.92295 0.93792 0.97845 0.92713 0.87526 0.93361 0.90568 0.90900 0.92941 0.94237 0.92081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.89 71.98 0.71 -0.55 16 2 C -0.09 -0.94 6.10 29.85 0.18 -0.76 16 3 C -0.02 -0.27 4.61 -17.61 -0.08 -0.35 16 4 C -0.24 -4.47 8.90 23.43 0.21 -4.26 16 5 C 0.54 14.02 7.51 86.57 0.65 14.67 16 6 O -0.57 -18.41 10.80 -4.08 -0.04 -18.46 16 7 N -0.61 -15.46 2.97 -822.27 -2.44 -17.90 16 8 C 0.12 2.36 6.11 86.51 0.53 2.89 16 9 C -0.11 -2.70 5.12 30.81 0.16 -2.54 16 10 C 0.11 3.64 0.68 -10.71 -0.01 3.63 16 11 C -0.14 -4.58 4.33 30.66 0.13 -4.44 16 12 C 0.13 3.81 6.20 86.36 0.54 4.35 16 13 C 0.12 5.01 5.39 86.34 0.47 5.48 16 14 N -0.61 -29.81 2.58 -697.60 -1.80 -31.61 16 15 C -0.27 -14.94 9.56 84.03 0.80 -14.14 16 16 H 0.07 3.65 8.00 -2.92 -0.02 3.62 16 17 C -0.03 -1.80 4.34 84.86 0.37 -1.43 16 18 N -0.91 -53.44 12.17 21.65 0.26 -53.18 16 19 Si 0.93 44.47 29.69 68.60 2.04 46.51 16 20 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 21 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 22 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 23 C 0.14 6.63 5.78 86.35 0.50 7.12 16 24 C 0.05 1.92 6.60 72.08 0.48 2.40 16 25 O -0.38 -12.87 9.00 -148.98 -1.34 -14.21 16 26 C -0.10 -2.01 5.33 29.85 0.16 -1.85 16 27 C -0.13 -2.63 9.39 71.98 0.68 -1.96 16 28 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.07 0.45 8.14 -2.38 -0.02 0.43 16 30 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 32 H 0.09 0.70 8.03 -2.39 -0.02 0.68 16 33 H 0.15 1.94 5.92 -2.91 -0.02 1.93 16 34 H 0.08 1.60 7.82 -2.39 -0.02 1.58 16 35 H 0.12 1.57 5.38 -2.39 -0.01 1.56 16 36 H 0.09 1.92 8.14 -2.39 -0.02 1.91 16 37 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.07 2.54 6.16 -2.39 -0.01 2.53 16 40 H 0.07 2.40 7.00 -2.39 -0.02 2.38 16 41 H 0.07 1.98 7.83 -2.39 -0.02 1.96 16 42 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.06 2.36 7.91 -2.39 -0.02 2.35 16 44 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 45 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 46 H 0.05 2.85 6.24 -2.38 -0.01 2.84 16 47 H 0.11 3.33 8.14 -2.39 -0.02 3.32 16 48 H 0.05 1.77 6.29 -2.39 -0.02 1.75 16 49 H 0.08 1.18 8.12 -2.39 -0.02 1.16 16 50 H 0.07 1.89 5.77 -2.39 -0.01 1.87 16 51 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 52 H 0.04 1.03 6.62 -2.39 -0.02 1.02 16 53 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 Total: -1.00 -67.48 397.47 4.02 -63.46 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: 0.88 Total: 17.13 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: 6.47 Total: 8.25 kcal Atomic # 7 Polarization: -98.71 SS G_CDS: -3.97 Total: -102.69 kcal Atomic # 8 Polarization: -31.28 SS G_CDS: -1.38 Total: -32.66 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.04 Total: 46.51 kcal Total: -67.48 4.02 -63.46 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725010835.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.486 kcal (2) G-P(sol) polarization free energy of solvation -67.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds