Wall clock time and date at job start Tue Mar 31 2020 19:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.46908 * 2 1 4 4 C 1.53004 * 109.46798 * 119.99620 * 2 1 3 5 5 C 1.50692 * 109.47163 * 239.99939 * 2 1 3 6 6 O 1.20787 * 120.00286 * 0.02562 * 5 2 1 7 7 C 1.49092 * 119.99911 * 179.97438 * 5 2 1 8 8 O 1.21364 * 119.99810 * 279.60156 * 7 5 2 9 9 N 1.34780 * 119.99998 * 99.60411 * 7 5 2 10 10 C 1.46928 * 120.62586 * 6.45009 * 9 7 5 11 11 C 1.52770 * 109.00377 * 233.57950 * 10 9 7 12 12 C 1.53035 * 109.38392 * 305.59407 * 11 10 9 13 13 N 1.46508 * 109.45669 * 181.26181 * 12 11 10 14 14 C 1.36938 * 119.99611 * 299.92844 * 13 12 11 15 15 H 1.07995 * 120.00232 * 14.81355 * 14 13 12 16 16 C 1.38811 * 119.99548 * 194.81831 * 14 13 12 17 17 N 1.31613 * 120.00436 * 25.26369 * 16 14 13 18 18 Si 1.86806 * 119.99811 * 205.26150 * 16 14 13 19 19 H 1.48507 * 109.47082 * 94.96386 * 18 16 14 20 20 H 1.48490 * 109.47407 * 214.96326 * 18 16 14 21 21 H 1.48503 * 109.47234 * 334.96881 * 18 16 14 22 22 C 1.46489 * 119.99964 * 119.92997 * 13 12 11 23 23 C 1.53000 * 109.47247 * 80.80336 * 22 13 12 24 24 C 1.52999 * 117.50230 * 243.61762 * 23 22 13 25 25 C 1.52992 * 60.00123 * 252.51184 * 24 23 22 26 26 C 1.53034 * 109.54183 * 61.23863 * 12 11 10 27 27 C 1.46920 * 120.63145 * 186.72597 * 9 7 5 28 28 H 1.09001 * 109.46842 * 60.00404 * 1 2 3 29 29 H 1.09002 * 109.46864 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47400 * 300.00219 * 1 2 3 31 31 H 1.09000 * 109.46769 * 60.00284 * 3 2 1 32 32 H 1.08997 * 109.46694 * 179.97438 * 3 2 1 33 33 H 1.08991 * 109.47022 * 300.00048 * 3 2 1 34 34 H 1.09002 * 109.46970 * 60.00608 * 4 2 1 35 35 H 1.09002 * 109.46756 * 179.97438 * 4 2 1 36 36 H 1.08988 * 109.47674 * 300.00102 * 4 2 1 37 37 H 1.08998 * 109.59252 * 353.41722 * 10 9 7 38 38 H 1.08997 * 109.58371 * 113.85003 * 10 9 7 39 39 H 1.08998 * 109.56333 * 185.55440 * 11 10 9 40 40 H 1.09001 * 109.35480 * 65.50444 * 11 10 9 41 41 H 1.09005 * 109.46101 * 301.21476 * 12 11 10 42 42 H 0.97006 * 120.00489 * 180.02562 * 17 16 14 43 43 H 1.09005 * 109.47307 * 200.80395 * 22 13 12 44 44 H 1.08996 * 109.47456 * 320.80304 * 22 13 12 45 45 H 1.08998 * 115.55176 * 29.32829 * 23 22 13 46 46 H 1.09006 * 117.49535 * 0.02562 * 24 23 22 47 47 H 1.09005 * 117.49888 * 145.01534 * 24 23 22 48 48 H 1.09000 * 117.49629 * 252.50787 * 25 24 23 49 49 H 1.08998 * 117.50171 * 107.49161 * 25 24 23 50 50 H 1.09003 * 109.49831 * 178.68006 * 26 12 11 51 51 H 1.09001 * 109.52457 * 58.60125 * 26 12 11 52 52 H 1.08991 * 109.58910 * 246.15573 * 27 9 7 53 53 H 1.09002 * 109.58967 * 6.44222 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 2.0324 -0.7104 -1.2304 6 8 1.2475 -1.1690 -2.0257 7 6 3.4982 -0.8461 -1.4666 8 8 4.1264 0.0823 -1.9318 9 7 4.1257 -1.9998 -1.1635 10 6 3.3599 -3.1777 -0.7334 11 6 3.9242 -3.6802 0.5944 12 6 5.4274 -3.9266 0.4467 13 7 5.9647 -4.4372 1.7104 14 6 5.8641 -3.6855 2.8506 15 1 5.1924 -2.8404 2.8828 16 6 6.6257 -4.0096 3.9649 17 7 7.7573 -4.6659 3.8205 18 14 6.0443 -3.5142 5.6697 19 1 5.3027 -4.6430 6.2873 20 1 7.2178 -3.1727 6.5131 21 1 5.1501 -2.3333 5.5641 22 6 6.6095 -5.7518 1.7543 23 6 8.0506 -5.6300 1.2550 24 6 8.4222 -6.3863 -0.0221 25 6 8.9334 -6.8771 1.3338 26 6 6.1284 -2.6145 0.0876 27 6 5.5887 -2.1016 -1.2512 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6767 -1.7489 1.2493 35 1 3.1300 -0.7216 1.2491 36 1 1.6767 -0.2074 2.1392 37 1 2.3125 -2.9054 -0.6041 38 1 3.4455 -3.9632 -1.4842 39 1 3.4287 -4.6102 0.8729 40 1 3.7526 -2.9304 1.3667 41 1 5.5996 -4.6582 -0.3428 42 1 8.2894 -4.8927 4.5993 43 1 6.6102 -6.1222 2.7795 44 1 6.0619 -6.4466 1.1175 45 1 8.5270 -4.6645 1.4252 46 1 7.6398 -6.9703 -0.5068 47 1 9.1431 -5.9182 -0.6925 48 1 9.9907 -6.7320 1.5555 49 1 8.4876 -7.7844 1.7414 50 1 7.2017 -2.7860 0.0056 51 1 5.9365 -1.8745 0.8647 52 1 5.8596 -2.7976 -2.0451 53 1 6.0112 -1.1200 -1.4659 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733277700.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:52 Heat of formation + Delta-G solvation = -36.441252 kcal Electronic energy + Delta-G solvation = -31679.569346 eV Core-core repulsion = 27745.482928 eV Total energy + Delta-G solvation = -3934.086418 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.23011 -40.21980 -39.11838 -37.97102 -36.93721 -36.16154 -33.83372 -32.23366 -31.53806 -28.56602 -28.31371 -27.93290 -27.39023 -25.89624 -24.13462 -23.74293 -22.98692 -22.19411 -21.12551 -20.81423 -19.60291 -18.61856 -18.05033 -17.57610 -17.36293 -16.96710 -16.13990 -16.07606 -15.74013 -15.49285 -15.44602 -15.20219 -15.09405 -14.81431 -14.55825 -14.40885 -14.30258 -13.67145 -13.61659 -13.38934 -13.22917 -13.17223 -13.12641 -13.05159 -12.69156 -12.64780 -12.50639 -12.40957 -12.31431 -12.22228 -12.14215 -12.01967 -11.96187 -11.89659 -11.74895 -11.49400 -11.26065 -10.78070 -10.51872 -10.39465 -10.10164 -9.83249 -8.66822 -7.71715 -5.01956 0.30795 1.11709 1.49871 1.55397 1.59388 1.64638 2.60548 2.71662 3.32503 3.39736 3.42185 3.57923 3.76085 3.76683 3.83826 4.08405 4.16308 4.19203 4.25839 4.36439 4.41602 4.45393 4.49519 4.63687 4.64498 4.65251 4.73128 4.77050 4.79874 4.82113 4.85830 4.86492 4.88736 4.93833 4.95713 5.03642 5.14819 5.15751 5.17616 5.24163 5.27289 5.35154 5.43658 5.49058 5.57913 5.64134 5.74496 5.85390 5.86736 5.97687 6.09558 6.45997 6.68826 7.30881 8.05465 8.46609 9.31630 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.012531 B = 0.003969 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.909829 B = 7052.124591 C = 8449.555596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.101 4.101 3 C -0.138 4.138 4 C -0.142 4.142 5 C 0.375 3.625 6 O -0.436 6.436 7 C 0.481 3.519 8 O -0.553 6.553 9 N -0.586 5.586 10 C 0.111 3.889 11 C -0.133 4.133 12 C 0.178 3.822 13 N -0.596 5.596 14 C -0.239 4.239 15 H 0.069 0.931 16 C -0.043 4.043 17 N -0.906 5.906 18 Si 0.934 3.066 19 H -0.295 1.295 20 H -0.309 1.309 21 H -0.274 1.274 22 C 0.209 3.791 23 C -0.106 4.106 24 C -0.189 4.189 25 C -0.184 4.184 26 C -0.123 4.123 27 C 0.119 3.881 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.049 0.951 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.048 0.952 36 H 0.094 0.906 37 H 0.083 0.917 38 H 0.094 0.906 39 H 0.080 0.920 40 H 0.060 0.940 41 H 0.067 0.933 42 H 0.241 0.759 43 H 0.049 0.951 44 H 0.027 0.973 45 H 0.067 0.933 46 H 0.096 0.904 47 H 0.086 0.914 48 H 0.075 0.925 49 H 0.083 0.917 50 H 0.059 0.941 51 H 0.044 0.956 52 H 0.088 0.912 53 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.092 3.500 -8.092 14.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.103 4.103 3 C -0.195 4.195 4 C -0.199 4.199 5 C 0.246 3.754 6 O -0.306 6.306 7 C 0.267 3.733 8 O -0.433 6.433 9 N -0.319 5.319 10 C -0.011 4.011 11 C -0.173 4.173 12 C 0.071 3.929 13 N -0.316 5.316 14 C -0.369 4.369 15 H 0.087 0.913 16 C -0.239 4.239 17 N -0.552 5.552 18 Si 0.765 3.235 19 H -0.223 1.223 20 H -0.237 1.237 21 H -0.199 1.199 22 C 0.083 3.917 23 C -0.126 4.126 24 C -0.226 4.226 25 C -0.221 4.221 26 C -0.163 4.163 27 C -0.004 4.004 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.110 0.890 31 H 0.114 0.886 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.068 0.932 36 H 0.112 0.888 37 H 0.101 0.899 38 H 0.112 0.888 39 H 0.099 0.901 40 H 0.079 0.921 41 H 0.086 0.914 42 H 0.050 0.950 43 H 0.068 0.932 44 H 0.046 0.954 45 H 0.086 0.914 46 H 0.114 0.886 47 H 0.105 0.895 48 H 0.094 0.906 49 H 0.102 0.898 50 H 0.077 0.923 51 H 0.063 0.937 52 H 0.106 0.894 53 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -11.101 3.667 -8.650 14.543 hybrid contribution 0.681 0.271 1.309 1.500 sum -10.419 3.938 -7.341 13.340 Atomic orbital electron populations 1.21762 0.90155 1.03269 1.03551 1.21231 0.99220 0.97422 0.92393 1.21835 1.01210 0.92460 1.03990 1.21956 1.01046 1.01038 0.95889 1.24950 0.87808 0.75484 0.87170 1.90444 1.57623 1.38405 1.44153 1.21370 0.90426 0.82991 0.78513 1.90753 1.67026 1.40032 1.45459 1.48303 1.08319 1.11232 1.64038 1.21907 0.94829 0.87014 0.97383 1.22225 0.97465 1.01864 0.95772 1.20376 0.91608 0.93273 0.87651 1.44304 1.66631 1.16114 1.04508 1.19200 1.17289 1.10588 0.89811 0.91278 1.25205 0.96019 1.02307 1.00392 1.70342 1.11377 1.45723 1.27794 0.85748 0.76934 0.77597 0.83180 1.22302 1.23655 1.19863 1.20154 0.88228 0.85065 0.98228 1.22588 0.98003 0.94524 0.97529 1.23104 1.03687 1.05090 0.90702 1.22657 0.99107 0.99345 1.01025 1.22182 0.99929 0.98950 0.95204 1.21726 0.77943 1.02531 0.98168 0.92254 0.91872 0.89049 0.88576 0.93144 0.92027 0.91215 0.93245 0.88768 0.89892 0.88800 0.90146 0.92140 0.91450 0.94967 0.93229 0.95447 0.91425 0.88586 0.89540 0.90609 0.89835 0.92269 0.93714 0.89416 0.90265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.11 7.76 71.98 0.56 -1.55 16 2 C -0.10 -2.04 0.87 -52.93 -0.05 -2.09 16 3 C -0.14 -2.67 8.23 71.98 0.59 -2.07 16 4 C -0.14 -2.82 7.85 71.98 0.57 -2.25 16 5 C 0.38 9.74 3.88 28.60 0.11 9.86 16 6 O -0.44 -12.40 16.48 -1.53 -0.03 -12.43 16 7 C 0.48 14.39 6.39 87.16 0.56 14.95 16 8 O -0.55 -19.61 15.93 -3.29 -0.05 -19.66 16 9 N -0.59 -16.04 2.98 -821.76 -2.45 -18.49 16 10 C 0.11 2.61 6.33 86.22 0.55 3.16 16 11 C -0.13 -3.76 5.29 30.53 0.16 -3.60 16 12 C 0.18 5.93 2.57 45.01 0.12 6.04 16 13 N -0.60 -25.14 2.48 -677.91 -1.68 -26.82 16 14 C -0.24 -11.45 8.40 84.03 0.71 -10.74 16 15 H 0.07 3.30 6.93 -2.91 -0.02 3.28 16 16 C -0.04 -2.20 4.79 84.86 0.41 -1.79 16 17 N -0.91 -48.44 9.59 21.65 0.21 -48.23 16 18 Si 0.93 42.47 29.62 68.60 2.03 44.51 16 19 H -0.30 -13.53 7.11 99.48 0.71 -12.83 16 20 H -0.31 -14.64 7.11 99.48 0.71 -13.93 16 21 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 22 C 0.21 8.86 5.06 86.38 0.44 9.30 16 23 C -0.11 -4.30 4.62 -10.79 -0.05 -4.35 16 24 C -0.19 -6.06 10.18 30.59 0.31 -5.75 16 25 C -0.18 -6.58 10.25 30.59 0.31 -6.26 16 26 C -0.12 -4.09 5.30 30.67 0.16 -3.93 16 27 C 0.12 3.34 6.42 86.36 0.55 3.89 16 28 H 0.06 1.00 8.10 -2.39 -0.02 0.98 16 29 H 0.06 1.04 8.10 -2.39 -0.02 1.02 16 30 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.05 1.18 7.33 -2.39 -0.02 1.17 16 33 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.07 1.32 7.65 -2.39 -0.02 1.30 16 35 H 0.05 1.19 7.43 -2.39 -0.02 1.18 16 36 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.08 1.80 5.61 -2.39 -0.01 1.78 16 38 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 40 H 0.06 1.88 6.33 -2.39 -0.02 1.87 16 41 H 0.07 2.09 7.91 -2.38 -0.02 2.07 16 42 H 0.24 12.98 8.31 -92.70 -0.77 12.21 16 43 H 0.05 2.46 6.13 -2.38 -0.01 2.44 16 44 H 0.03 1.04 7.85 -2.39 -0.02 1.02 16 45 H 0.07 3.31 7.76 -2.39 -0.02 3.29 16 46 H 0.10 2.75 8.03 -2.38 -0.02 2.73 16 47 H 0.09 2.58 8.14 -2.38 -0.02 2.56 16 48 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 49 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 50 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 51 H 0.04 1.71 7.65 -2.39 -0.02 1.69 16 52 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 53 H 0.08 2.39 7.05 -2.39 -0.02 2.38 16 Total: -1.00 -59.32 410.31 4.91 -54.41 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: 0.87 Total: 23.91 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: 6.00 Total: 2.81 kcal Atomic # 7 Polarization: -89.62 SS G_CDS: -3.92 Total: -93.54 kcal Atomic # 8 Polarization: -32.01 SS G_CDS: -0.08 Total: -32.09 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.51 kcal Total: -59.32 4.91 -54.41 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733277700.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.968 kcal (2) G-P(sol) polarization free energy of solvation -59.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds