Wall clock time and date at job start Tue Mar 31 2020 19:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46493 * 109.47060 * 161.22476 * 3 2 1 5 5 C 1.34776 * 120.00384 * 267.38453 * 4 3 2 6 6 O 1.21273 * 120.00694 * 185.22192 * 5 4 3 7 7 C 1.50706 * 119.99734 * 5.21977 * 5 4 3 8 8 H 1.09003 * 109.46761 * 40.33781 * 7 5 4 9 9 C 1.52996 * 109.47258 * 280.33971 * 7 5 4 10 10 C 1.53006 * 109.47181 * 174.44684 * 9 7 5 11 11 C 1.53001 * 109.46795 * 174.99829 * 10 9 7 12 12 C 1.53003 * 109.46715 * 294.99682 * 10 9 7 13 13 O 1.42896 * 109.47231 * 160.33342 * 7 5 4 14 14 C 1.42898 * 114.00447 * 270.00270 * 13 7 5 15 15 C 1.46500 * 119.99949 * 87.38306 * 4 3 2 16 16 C 1.53040 * 109.46074 * 60.00294 * 15 4 3 17 17 C 1.53187 * 109.31438 * 178.61472 * 16 15 4 18 18 N 1.46929 * 108.89541 * 54.56030 * 17 16 15 19 19 C 1.36939 * 120.63287 * 126.46604 * 18 17 16 20 20 H 1.08007 * 119.99537 * 324.13750 * 19 18 17 21 21 C 1.38812 * 120.00032 * 144.13434 * 19 18 17 22 22 N 1.31609 * 119.99874 * 0.39786 * 21 19 18 23 23 Si 1.86795 * 119.99816 * 180.40119 * 21 19 18 24 24 H 1.48502 * 109.47262 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47376 * 119.99875 * 23 21 19 26 26 H 1.48500 * 109.47118 * 240.00054 * 23 21 19 27 27 C 1.46965 * 118.71558 * 306.64585 * 18 17 16 28 28 C 1.53040 * 109.46218 * 299.93259 * 15 4 3 29 29 H 4.40634 * 5.51348 * 179.97438 * 4 1 2 30 30 H 1.09002 * 109.47170 * 41.22421 * 3 2 1 31 31 H 1.09003 * 109.47063 * 281.22547 * 3 2 1 32 32 H 1.08999 * 109.46874 * 294.44129 * 9 7 5 33 33 H 1.08999 * 109.47267 * 54.43890 * 9 7 5 34 34 H 1.08994 * 109.47183 * 54.99714 * 10 9 7 35 35 H 1.08994 * 109.47348 * 59.99987 * 11 10 9 36 36 H 1.08998 * 109.46626 * 179.97438 * 11 10 9 37 37 H 1.08997 * 109.47251 * 299.99069 * 11 10 9 38 38 H 1.09004 * 109.46795 * 180.02562 * 12 10 9 39 39 H 1.09001 * 109.46703 * 300.00176 * 12 10 9 40 40 H 1.08998 * 109.46908 * 59.99867 * 12 10 9 41 41 H 1.09004 * 109.47400 * 180.02562 * 14 13 7 42 42 H 1.08996 * 109.47152 * 300.00194 * 14 13 7 43 43 H 1.09003 * 109.46977 * 59.99718 * 14 13 7 44 44 H 1.09006 * 109.44885 * 179.97438 * 15 4 3 45 45 H 1.09000 * 109.49763 * 58.65755 * 16 15 4 46 46 H 1.09000 * 109.49515 * 298.56306 * 16 15 4 47 47 H 1.08996 * 109.59018 * 174.41949 * 17 16 15 48 48 H 1.09005 * 109.58822 * 294.70366 * 17 16 15 49 49 H 0.97007 * 120.00007 * 179.97438 * 22 21 19 50 50 H 1.09001 * 109.46454 * 293.57186 * 27 18 17 51 51 H 1.09000 * 109.71385 * 173.28661 * 27 18 17 52 52 H 1.09003 * 109.49495 * 301.33989 * 28 15 4 53 53 H 1.08991 * 109.49922 * 61.39861 * 28 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3085 -0.4445 5 6 3.4085 1.5182 -1.7472 6 8 3.9011 2.5681 -2.1018 7 6 3.1036 0.4478 -2.7633 8 1 2.1463 -0.0163 -2.5260 9 6 4.2059 -0.6127 -2.7334 10 6 3.8282 -1.7674 -3.6636 11 6 4.9842 -2.7675 -3.7302 12 6 2.5784 -2.4673 -3.1260 13 8 3.0397 1.0319 -4.0659 14 6 1.7357 1.4832 -4.4373 15 6 3.3228 2.3887 0.5269 16 6 4.3422 1.9529 1.5820 17 6 4.5631 3.0972 2.5761 18 7 3.2638 3.5075 3.1258 19 6 3.0640 3.5595 4.4796 20 1 3.5320 2.8291 5.1229 21 6 2.2600 4.5510 5.0249 22 7 1.6834 5.4364 4.2401 23 14 1.9964 4.6287 6.8725 24 1 2.7484 3.5277 7.5265 25 1 2.4817 5.9343 7.3874 26 1 0.5492 4.4853 7.1726 27 6 2.1818 3.8571 2.1948 28 6 1.9875 2.7042 1.2049 29 1 -1.0501 -0.0005 0.0000 30 1 3.0097 -0.7721 -0.6772 31 1 3.0094 -0.1992 1.0080 32 1 5.1448 -0.1703 -3.0662 33 1 4.3214 -0.9881 -1.7166 34 1 3.6261 -1.3787 -4.6616 35 1 5.1863 -3.1562 -2.7322 36 1 4.7149 -3.5903 -4.3925 37 1 5.8745 -2.2689 -4.1132 38 1 2.3096 -3.2902 -3.7885 39 1 2.7806 -2.8560 -2.1279 40 1 1.7550 -1.7547 -3.0785 41 1 1.7713 1.9128 -5.4385 42 1 1.0436 0.6412 -4.4281 43 1 1.3975 2.2393 -3.7288 44 1 3.6886 3.2782 0.0140 45 1 5.2859 1.7059 1.0958 46 1 3.9656 1.0781 2.1121 47 1 5.2115 2.7591 3.3844 48 1 5.0264 3.9411 2.0648 49 1 1.1212 6.1291 4.6211 50 1 2.4486 4.7638 1.6518 51 1 1.2582 4.0219 2.7496 52 1 1.2554 2.9919 0.4504 53 1 1.6329 1.8222 1.7381 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733373024.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:10 Heat of formation + Delta-G solvation = -28.652849 kcal Electronic energy + Delta-G solvation = -31258.638222 eV Core-core repulsion = 27324.889534 eV Total energy + Delta-G solvation = -3933.748688 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.76236 -39.62587 -38.42904 -37.29334 -36.63346 -34.69213 -33.48608 -32.25987 -31.56974 -30.75804 -28.29868 -27.98487 -27.43866 -27.04484 -25.39614 -23.88906 -23.43968 -21.00100 -20.93267 -20.83338 -19.21652 -18.66701 -18.61556 -17.75193 -17.17855 -16.82588 -16.72069 -16.03166 -15.87913 -15.52937 -15.42868 -15.33724 -14.89863 -14.86228 -14.66621 -14.53544 -14.29587 -14.17776 -14.08376 -13.60783 -13.25708 -13.08618 -12.97790 -12.90536 -12.78456 -12.66053 -12.58924 -12.34541 -12.25913 -12.01350 -11.95334 -11.86857 -11.62274 -11.55877 -11.49501 -11.48723 -11.42910 -11.29828 -11.00657 -10.59002 -10.30622 -9.87142 -8.59862 -7.88414 -5.45829 1.31872 1.46170 1.47789 1.49826 1.58400 1.89383 2.21560 2.48982 2.71618 3.29189 3.32037 3.48133 3.64865 3.77233 3.81279 3.86539 4.02044 4.05855 4.11085 4.16130 4.29291 4.32573 4.38959 4.41752 4.44803 4.51140 4.64177 4.68171 4.73865 4.74781 4.83164 4.84290 4.89730 4.98560 5.01427 5.03519 5.07064 5.09706 5.12971 5.13814 5.28083 5.35024 5.42601 5.48916 5.50148 5.55664 5.63754 5.70462 5.92749 6.29556 6.43107 6.68776 7.02964 7.15083 7.80823 8.37835 9.17574 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.018858 B = 0.002902 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.405495 B = 9644.613670 C = 9718.656472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.236 4.236 3 C 0.204 3.796 4 N -0.595 5.595 5 C 0.486 3.514 6 O -0.572 6.572 7 C 0.081 3.919 8 H 0.104 0.896 9 C -0.109 4.109 10 C -0.089 4.089 11 C -0.145 4.145 12 C -0.153 4.153 13 O -0.374 6.374 14 C 0.024 3.976 15 C 0.153 3.847 16 C -0.123 4.123 17 C 0.144 3.856 18 N -0.609 5.609 19 C -0.263 4.263 20 H 0.071 0.929 21 C -0.047 4.047 22 N -0.937 5.937 23 Si 0.971 3.029 24 H -0.262 1.262 25 H -0.293 1.293 26 H -0.290 1.290 27 C 0.183 3.817 28 C -0.120 4.120 29 H 0.241 0.759 30 H 0.132 0.868 31 H 0.115 0.885 32 H 0.067 0.933 33 H 0.100 0.900 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.050 0.950 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.049 0.951 41 H 0.104 0.896 42 H 0.067 0.933 43 H 0.022 0.978 44 H 0.063 0.937 45 H 0.077 0.923 46 H 0.076 0.924 47 H 0.067 0.933 48 H 0.006 0.994 49 H 0.250 0.750 50 H -0.016 1.016 51 H 0.064 0.936 52 H 0.044 0.956 53 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.011 -20.570 -15.697 25.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.237 4.237 3 C 0.083 3.917 4 N -0.327 5.327 5 C 0.274 3.726 6 O -0.450 6.450 7 C 0.020 3.980 8 H 0.122 0.878 9 C -0.147 4.147 10 C -0.107 4.107 11 C -0.203 4.203 12 C -0.210 4.210 13 O -0.292 6.292 14 C -0.072 4.072 15 C 0.050 3.950 16 C -0.162 4.162 17 C 0.018 3.982 18 N -0.333 5.333 19 C -0.393 4.393 20 H 0.088 0.912 21 C -0.242 4.242 22 N -0.583 5.583 23 Si 0.799 3.201 24 H -0.186 1.186 25 H -0.220 1.220 26 H -0.217 1.217 27 C 0.057 3.943 28 C -0.160 4.160 29 H 0.257 0.743 30 H 0.149 0.851 31 H 0.133 0.867 32 H 0.086 0.914 33 H 0.118 0.882 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.069 0.931 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.068 0.932 41 H 0.123 0.877 42 H 0.086 0.914 43 H 0.041 0.959 44 H 0.081 0.919 45 H 0.096 0.904 46 H 0.095 0.905 47 H 0.085 0.915 48 H 0.024 0.976 49 H 0.059 0.941 50 H 0.002 0.998 51 H 0.082 0.918 52 H 0.063 0.937 53 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.362 -19.871 -15.977 25.500 hybrid contribution -0.840 1.256 1.130 1.887 sum -0.478 -18.615 -14.847 23.815 Atomic orbital electron populations 1.25667 0.96781 0.97543 0.99369 1.23719 0.95392 1.02633 1.01977 1.18899 0.84090 0.84553 1.04155 1.48255 1.64350 1.13312 1.06783 1.22210 0.77209 0.89417 0.83722 1.90677 1.44442 1.29818 1.80052 1.22312 1.02595 0.90843 0.82248 0.87839 1.21873 0.96608 0.93804 1.02408 1.21029 0.96568 0.94195 0.98930 1.21817 0.97237 0.98619 1.02596 1.21965 0.96526 1.00460 1.02052 1.87959 1.31515 1.79428 1.30275 1.23017 0.83851 0.98990 1.01382 1.20857 0.95944 0.89572 0.88662 1.22194 0.98419 0.99518 0.96112 1.21011 0.87696 0.94148 0.95342 1.44236 1.07504 1.79390 1.02154 1.19535 1.28300 1.07918 0.83557 0.91181 1.26125 1.00677 0.95394 1.02035 1.70120 1.34974 1.18089 1.35106 0.85149 0.77208 0.77497 0.80265 1.18583 1.22023 1.21697 1.20539 0.93021 0.91344 0.89398 1.22247 0.95826 1.00180 0.97709 0.74302 0.85107 0.86723 0.91383 0.88214 0.91198 0.91770 0.91662 0.93054 0.91488 0.91417 0.93207 0.87719 0.91411 0.95936 0.91877 0.90414 0.90543 0.91462 0.97612 0.94070 0.99793 0.91808 0.93749 0.91659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.59 19.25 74.32 1.43 -2.16 16 2 C -0.24 -5.32 11.25 31.13 0.35 -4.97 16 3 C 0.20 4.27 5.02 84.58 0.42 4.70 16 4 N -0.59 -17.13 2.38 -808.16 -1.93 -19.06 16 5 C 0.49 15.14 6.89 87.66 0.60 15.74 16 6 O -0.57 -23.60 15.95 15.25 0.24 -23.35 16 7 C 0.08 1.84 1.55 29.85 0.05 1.88 16 8 H 0.10 1.96 4.76 -2.39 -0.01 1.95 16 9 C -0.11 -1.89 4.02 30.59 0.12 -1.76 16 10 C -0.09 -1.16 2.87 -10.79 -0.03 -1.20 16 11 C -0.15 -1.58 9.19 71.98 0.66 -0.91 16 12 C -0.15 -1.59 8.96 71.98 0.64 -0.95 16 13 O -0.37 -9.60 9.44 -130.72 -1.23 -10.84 16 14 C 0.02 0.48 10.81 113.37 1.23 1.71 16 15 C 0.15 5.53 2.48 45.02 0.11 5.64 16 16 C -0.12 -4.11 5.30 30.67 0.16 -3.95 16 17 C 0.14 6.07 6.51 86.36 0.56 6.64 16 18 N -0.61 -31.01 2.99 -699.00 -2.09 -33.10 16 19 C -0.26 -14.35 9.55 84.03 0.80 -13.55 16 20 H 0.07 3.67 7.83 -2.91 -0.02 3.65 16 21 C -0.05 -2.62 5.25 84.86 0.45 -2.17 16 22 N -0.94 -56.03 10.83 21.65 0.23 -55.80 16 23 Si 0.97 44.55 29.55 68.60 2.03 46.58 16 24 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 25 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 26 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 27 C 0.18 9.29 5.22 86.35 0.45 9.74 16 28 C -0.12 -4.79 4.67 30.67 0.14 -4.65 16 29 H 0.24 3.30 7.80 -4.41 -0.03 3.27 16 30 H 0.13 1.88 4.56 -2.39 -0.01 1.87 16 31 H 0.11 2.28 6.46 -2.39 -0.02 2.26 16 32 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.10 1.35 6.05 -2.39 -0.01 1.33 16 34 H 0.07 1.08 7.71 -2.39 -0.02 1.06 16 35 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 39 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.05 0.56 6.45 -2.39 -0.02 0.55 16 41 H 0.10 1.77 8.14 -2.38 -0.02 1.75 16 42 H 0.07 1.01 8.08 -2.39 -0.02 0.99 16 43 H 0.02 0.54 8.14 -2.39 -0.02 0.52 16 44 H 0.06 2.73 6.91 -2.38 -0.02 2.72 16 45 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 46 H 0.08 2.35 6.74 -2.39 -0.02 2.34 16 47 H 0.07 2.67 7.93 -2.39 -0.02 2.65 16 48 H 0.01 0.26 8.14 -2.38 -0.02 0.24 16 49 H 0.25 14.45 8.31 -92.70 -0.77 13.68 16 50 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 51 H 0.06 3.62 6.12 -2.39 -0.01 3.61 16 52 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 53 H 0.06 2.53 6.89 -2.39 -0.02 2.52 16 Total: -1.00 -73.71 411.61 6.28 -67.42 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: 0.87 Total: 18.37 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: 8.16 Total: 9.78 kcal Atomic # 7 Polarization: -104.17 SS G_CDS: -3.78 Total: -107.96 kcal Atomic # 8 Polarization: -33.20 SS G_CDS: -0.99 Total: -34.19 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -73.71 6.28 -67.42 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733373024.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.769 kcal (2) G-P(sol) polarization free energy of solvation -73.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds