Wall clock time and date at job start Tue Mar 31 2020 20:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47196 * 2 1 4 4 C 1.53002 * 109.46928 * 119.99584 * 2 1 3 5 5 C 1.50700 * 109.47094 * 300.00049 * 4 2 1 6 6 O 1.21280 * 120.00348 * 359.97438 * 5 4 2 7 7 N 1.34780 * 120.00309 * 179.97438 * 5 4 2 8 8 C 1.46492 * 120.00570 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.47356 * 180.02562 * 8 7 5 10 10 H 1.08998 * 110.52799 * 307.80619 * 9 8 7 11 11 C 1.55052 * 110.58757 * 185.00168 * 9 8 7 12 12 C 1.54992 * 102.30880 * 204.76230 * 11 9 8 13 13 C 1.53998 * 103.58736 * 20.92574 * 12 11 9 14 14 C 1.53212 * 115.00343 * 132.25453 * 13 12 11 15 15 N 1.47715 * 85.90113 * 92.98179 * 14 13 12 16 16 C 1.36935 * 134.43102 * 204.13868 * 15 14 13 17 17 H 1.07999 * 120.00186 * 179.97438 * 16 15 14 18 18 C 1.38816 * 120.00301 * 359.96570 * 16 15 14 19 19 N 1.31627 * 119.99636 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00465 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46876 * 90.00179 * 20 18 16 22 22 H 1.48496 * 109.47453 * 210.00117 * 20 18 16 23 23 H 1.48505 * 109.47121 * 330.00601 * 20 18 16 24 24 C 1.47712 * 91.13531 * 24.11501 * 15 14 13 25 25 O 1.42963 * 108.22124 * 1.62163 * 13 12 11 26 26 C 1.52997 * 109.47392 * 239.99422 * 2 1 3 27 27 C 1.52996 * 117.49903 * 128.62192 * 26 2 1 28 28 C 1.52999 * 117.49458 * 59.99919 * 26 2 1 29 29 H 1.09004 * 109.47651 * 300.00062 * 1 2 3 30 30 H 1.08997 * 109.47424 * 60.00427 * 1 2 3 31 31 H 1.09000 * 109.47403 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47487 * 180.02562 * 3 2 1 33 33 H 1.09010 * 109.46979 * 299.99555 * 3 2 1 34 34 H 1.08995 * 109.47650 * 59.99283 * 3 2 1 35 35 H 1.09003 * 109.47323 * 180.02562 * 4 2 1 36 36 H 1.09000 * 109.47132 * 59.99769 * 4 2 1 37 37 H 0.97003 * 119.99700 * 359.97438 * 7 5 4 38 38 H 1.09003 * 109.46789 * 59.99861 * 8 7 5 39 39 H 1.08997 * 109.47234 * 300.00451 * 8 7 5 40 40 H 1.09002 * 110.87414 * 323.02524 * 11 9 8 41 41 H 1.09003 * 110.87390 * 86.50324 * 11 9 8 42 42 H 1.09006 * 110.55157 * 139.55896 * 12 11 9 43 43 H 1.08993 * 110.55409 * 262.37978 * 12 11 9 44 44 H 1.09007 * 113.80163 * 207.22466 * 14 13 12 45 45 H 1.08998 * 113.80964 * 338.72691 * 14 13 12 46 46 H 0.96992 * 119.99587 * 179.97438 * 19 18 16 47 47 H 1.09000 * 113.80660 * 221.64432 * 24 15 14 48 48 H 1.09003 * 113.80693 * 90.12936 * 24 15 14 49 49 H 1.08996 * 115.54918 * 274.33144 * 26 2 1 50 50 H 1.08998 * 117.49795 * 0.02562 * 27 26 2 51 51 H 1.08999 * 117.50109 * 145.02471 * 27 26 2 52 52 H 1.09007 * 117.49735 * 214.97704 * 28 26 2 53 53 H 1.08995 * 117.50173 * 0.02562 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.5376 -0.0107 2.4797 6 8 0.8407 0.9757 2.3684 7 7 1.8626 -0.4713 3.7039 8 6 1.3748 0.2196 4.9000 9 6 1.8847 -0.5016 6.1493 10 1 1.6481 -1.5645 6.1004 11 6 1.2818 0.1328 7.4293 12 6 2.3337 -0.2343 8.5069 13 6 3.6052 -0.5233 7.6876 14 6 4.8767 0.1587 8.2031 15 7 5.1112 -1.0878 8.9601 16 6 5.8106 -1.4034 10.0942 17 1 5.8257 -2.4218 10.4535 18 6 6.5005 -0.4145 10.7821 19 7 6.4818 0.8267 10.3443 20 14 7.4541 -0.8449 12.3296 21 1 8.8455 -1.2155 11.9666 22 1 7.4758 0.3281 13.2400 23 1 6.7991 -1.9895 13.0124 24 6 4.2888 -1.8575 8.0045 25 8 3.3077 -0.3010 6.3071 26 6 2.0400 -0.7213 -1.2491 27 6 3.0742 0.0050 -2.1116 28 6 1.6357 -0.1497 -2.6095 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8901 34 1 1.6766 1.9564 0.8898 35 1 3.1300 -0.7208 1.2496 36 1 1.6765 -1.7488 1.2494 37 1 2.4197 -1.2604 3.7930 38 1 0.2848 0.2205 4.8999 39 1 1.7388 1.2470 4.9000 40 1 1.1956 1.2142 7.3232 41 1 0.3143 -0.3110 7.6640 42 1 2.4945 0.6033 9.1857 43 1 2.0226 -1.1211 9.0588 44 1 5.6191 0.3489 7.4279 45 1 4.6855 1.0271 8.8335 46 1 6.9635 1.5177 10.8252 47 1 3.6316 -2.5871 8.4777 48 1 4.8551 -2.2709 7.1699 49 1 2.1267 -1.8045 -1.1640 50 1 3.3914 0.9966 -1.7888 51 1 3.8416 -0.6003 -2.5940 52 1 1.4569 -0.8568 -3.4196 53 1 1.0068 0.7405 -2.6146 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733787871.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:02 Heat of formation + Delta-G solvation = -26.093867 kcal Electronic energy + Delta-G solvation = -29586.279445 eV Core-core repulsion = 25652.641723 eV Total energy + Delta-G solvation = -3933.637722 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.46465 -41.08141 -39.23184 -38.04988 -35.68590 -34.39318 -34.09387 -33.05364 -30.96733 -29.35132 -28.23323 -28.06127 -26.77615 -25.26980 -24.20101 -23.37462 -23.01502 -22.30858 -21.24061 -20.38730 -19.28208 -18.77259 -18.00533 -17.72817 -17.16892 -16.94706 -16.47818 -16.33727 -16.25266 -15.77999 -15.58357 -15.34550 -14.82540 -14.76383 -14.45336 -14.34232 -14.13780 -13.96742 -13.60354 -13.32246 -13.29399 -12.95525 -12.85727 -12.71968 -12.60862 -12.46905 -12.34101 -12.22795 -12.18199 -12.03574 -11.96850 -11.87758 -11.80430 -11.62466 -11.61508 -11.45848 -11.09709 -10.87838 -10.70621 -10.40945 -10.35644 -9.96731 -8.97989 -7.93189 -5.27824 1.45213 1.47568 1.56298 1.74254 2.26097 2.42976 2.80524 2.98289 3.25787 3.43898 3.58170 3.68695 3.74076 3.75817 3.80437 4.01962 4.03468 4.12671 4.16186 4.26106 4.31925 4.39803 4.49681 4.53481 4.60485 4.64081 4.71461 4.74702 4.82441 4.83875 4.86205 4.90977 4.92801 4.94827 5.03902 5.05676 5.11130 5.13964 5.15934 5.17343 5.20346 5.21758 5.33758 5.38611 5.41946 5.47554 5.48278 5.56855 5.71967 5.86835 6.16358 6.63664 6.87611 7.36858 7.56960 8.51486 9.24330 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.022597 B = 0.001978 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.823561 B =14149.899002 C =14779.247680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.013 4.013 3 C -0.152 4.152 4 C -0.127 4.127 5 C 0.509 3.491 6 O -0.567 6.567 7 N -0.722 5.722 8 C 0.134 3.866 9 C 0.064 3.936 10 H 0.097 0.903 11 C -0.136 4.136 12 C -0.112 4.112 13 C 0.078 3.922 14 C 0.168 3.832 15 N -0.631 5.631 16 C -0.232 4.232 17 H 0.089 0.911 18 C -0.069 4.069 19 N -0.955 5.955 20 Si 0.982 3.018 21 H -0.288 1.288 22 H -0.294 1.294 23 H -0.264 1.264 24 C 0.110 3.890 25 O -0.373 6.373 26 C -0.144 4.144 27 C -0.189 4.189 28 C -0.177 4.177 29 H 0.061 0.939 30 H 0.050 0.950 31 H 0.056 0.944 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.060 0.940 35 H 0.104 0.896 36 H 0.117 0.883 37 H 0.413 0.587 38 H 0.094 0.906 39 H 0.054 0.946 40 H 0.078 0.922 41 H 0.112 0.888 42 H 0.060 0.940 43 H 0.084 0.916 44 H 0.007 0.993 45 H 0.048 0.952 46 H 0.249 0.751 47 H 0.067 0.933 48 H 0.043 0.957 49 H 0.116 0.884 50 H 0.094 0.906 51 H 0.099 0.901 52 H 0.102 0.898 53 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.621 -5.744 -21.671 26.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.013 4.013 3 C -0.209 4.209 4 C -0.166 4.166 5 C 0.298 3.702 6 O -0.447 6.447 7 N -0.374 5.374 8 C 0.010 3.990 9 C 0.007 3.993 10 H 0.115 0.885 11 C -0.174 4.174 12 C -0.150 4.150 13 C 0.037 3.963 14 C 0.043 3.957 15 N -0.359 5.359 16 C -0.360 4.360 17 H 0.107 0.893 18 C -0.262 4.262 19 N -0.604 5.604 20 Si 0.810 3.190 21 H -0.215 1.215 22 H -0.221 1.221 23 H -0.188 1.188 24 C -0.015 4.015 25 O -0.292 6.292 26 C -0.162 4.162 27 C -0.225 4.225 28 C -0.214 4.214 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.122 0.878 36 H 0.135 0.865 37 H 0.249 0.751 38 H 0.112 0.888 39 H 0.072 0.928 40 H 0.096 0.904 41 H 0.130 0.870 42 H 0.079 0.921 43 H 0.103 0.897 44 H 0.025 0.975 45 H 0.066 0.934 46 H 0.058 0.942 47 H 0.085 0.915 48 H 0.061 0.939 49 H 0.134 0.866 50 H 0.112 0.888 51 H 0.117 0.883 52 H 0.120 0.880 53 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -14.796 -4.940 -21.640 26.676 hybrid contribution 1.381 -0.052 1.106 1.770 sum -13.415 -4.991 -20.534 25.031 Atomic orbital electron populations 1.21994 0.94293 1.01674 1.02258 1.19711 0.95614 0.94275 0.91704 1.22159 1.00265 0.96325 1.02195 1.21779 1.03201 1.01117 0.90533 1.21132 0.79533 0.84271 0.85286 1.90579 1.39552 1.27749 1.86813 1.46011 1.53696 1.32401 1.05247 1.21301 0.99392 0.95868 0.82399 1.23539 0.81028 1.00181 0.94550 0.88546 1.23129 0.99419 1.02183 0.92637 1.22483 0.92336 1.02403 0.97748 1.23835 0.95393 0.95923 0.81105 1.22173 0.91261 0.91311 0.90999 1.45992 1.58856 1.06300 1.24762 1.19405 1.23133 0.94707 0.98798 0.89329 1.25702 1.02117 0.95502 1.02848 1.70027 1.47328 1.00996 1.42021 0.85022 0.78296 0.77056 0.78612 1.21493 1.22070 1.18834 1.23130 0.92207 0.94681 0.91516 1.88799 1.24275 1.90793 1.25331 1.22345 1.03857 0.99288 0.90742 1.23189 0.92769 1.02556 1.04022 1.22957 0.97979 1.03294 0.97193 0.91978 0.93090 0.92480 0.92895 0.92993 0.92154 0.87768 0.86517 0.75147 0.88839 0.92805 0.90377 0.86964 0.92079 0.89698 0.97530 0.93419 0.94205 0.91495 0.93905 0.86618 0.88755 0.88264 0.88005 0.89380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 8.02 71.98 0.58 -1.95 16 2 C -0.01 -0.20 0.62 -52.18 -0.03 -0.23 16 3 C -0.15 -2.97 6.77 71.98 0.49 -2.48 16 4 C -0.13 -1.84 4.75 29.85 0.14 -1.70 16 5 C 0.51 10.57 7.24 87.66 0.63 11.21 16 6 O -0.57 -15.46 11.35 -3.03 -0.03 -15.50 16 7 N -0.72 -13.84 5.56 -463.07 -2.57 -16.41 16 8 C 0.13 2.86 5.41 86.38 0.47 3.33 16 9 C 0.06 1.45 3.38 31.30 0.11 1.56 16 10 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 11 C -0.14 -3.02 6.58 31.98 0.21 -2.81 16 12 C -0.11 -3.51 6.50 31.61 0.21 -3.30 16 13 C 0.08 2.93 1.56 -10.27 -0.02 2.92 16 14 C 0.17 8.43 7.00 86.21 0.60 9.03 16 15 N -0.63 -32.71 3.68 -733.78 -2.70 -35.41 16 16 C -0.23 -13.03 10.70 84.03 0.90 -12.13 16 17 H 0.09 4.68 7.83 -2.91 -0.02 4.66 16 18 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16 19 N -0.96 -58.41 11.39 21.65 0.25 -58.16 16 20 Si 0.98 45.64 29.55 68.60 2.03 47.67 16 21 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 22 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 23 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 24 C 0.11 4.40 8.43 86.22 0.73 5.13 16 25 O -0.37 -12.20 10.99 -148.98 -1.64 -13.83 16 26 C -0.14 -1.85 5.15 -10.80 -0.06 -1.91 16 27 C -0.19 -2.43 9.57 30.59 0.29 -2.14 16 28 C -0.18 -2.21 9.38 30.59 0.29 -1.92 16 29 H 0.06 1.40 5.51 -2.39 -0.01 1.39 16 30 H 0.05 0.86 7.29 -2.39 -0.02 0.84 16 31 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.05 0.98 6.97 -2.39 -0.02 0.96 16 33 H 0.05 0.95 7.07 -2.38 -0.02 0.94 16 34 H 0.06 1.51 5.51 -2.39 -0.01 1.50 16 35 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.41 6.46 8.47 -92.71 -0.79 5.67 16 38 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.08 1.76 8.05 -2.39 -0.02 1.74 16 41 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.06 2.19 7.78 -2.38 -0.02 2.17 16 43 H 0.08 2.48 7.75 -2.39 -0.02 2.46 16 44 H 0.01 0.37 8.14 -2.38 -0.02 0.35 16 45 H 0.05 2.64 6.91 -2.39 -0.02 2.63 16 46 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 47 H 0.07 2.38 7.86 -2.39 -0.02 2.36 16 48 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 49 H 0.12 1.20 8.11 -2.39 -0.02 1.18 16 50 H 0.09 1.35 5.85 -2.39 -0.01 1.34 16 51 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 52 H 0.10 1.04 8.14 -2.38 -0.02 1.02 16 53 H 0.09 1.19 7.07 -2.39 -0.02 1.18 16 Total: -1.00 -71.18 406.33 1.44 -69.74 By element: Atomic # 1 Polarization: 22.66 SS G_CDS: 0.11 Total: 22.77 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: 6.00 Total: -0.87 kcal Atomic # 7 Polarization: -104.96 SS G_CDS: -5.03 Total: -109.98 kcal Atomic # 8 Polarization: -27.66 SS G_CDS: -1.67 Total: -29.33 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -71.18 1.44 -69.74 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733787871.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.649 kcal (2) G-P(sol) polarization free energy of solvation -71.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds