Wall clock time and date at job start Tue Mar 31 2020 20:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46699 * 2 1 4 4 C 1.53000 * 109.47053 * 119.99553 * 2 1 3 5 5 C 1.50693 * 109.47467 * 300.00613 * 4 2 1 6 6 O 1.21282 * 119.99901 * 359.97438 * 5 4 2 7 7 N 1.34779 * 120.00280 * 180.02562 * 5 4 2 8 8 C 1.46498 * 120.00477 * 180.02562 * 7 5 4 9 9 C 1.52989 * 109.47323 * 179.97438 * 8 7 5 10 10 H 1.09001 * 109.82826 * 59.43042 * 9 8 7 11 11 C 1.54475 * 109.90954 * 180.37540 * 9 8 7 12 12 C 1.55506 * 102.38976 * 140.92038 * 11 9 8 13 13 C 1.53886 * 100.75646 * 327.02971 * 12 11 9 14 14 C 1.52379 * 115.67984 * 263.23393 * 13 12 11 15 15 N 1.47275 * 87.70591 * 218.74780 * 14 13 12 16 16 C 1.36929 * 135.93730 * 206.17955 * 15 14 13 17 17 H 1.08008 * 120.00050 * 7.79720 * 16 15 14 18 18 C 1.38814 * 120.00484 * 187.79880 * 16 15 14 19 19 N 1.31612 * 120.00208 * 195.39028 * 18 16 15 20 20 Si 1.86800 * 119.99390 * 15.38484 * 18 16 15 21 21 H 1.48502 * 109.47257 * 270.00241 * 20 18 16 22 22 H 1.48500 * 109.46659 * 150.00316 * 20 18 16 23 23 H 1.48500 * 109.47327 * 30.00383 * 20 18 16 24 24 C 1.47277 * 88.12670 * 26.43156 * 15 14 13 25 25 O 1.42401 * 106.67177 * 34.97544 * 13 12 11 26 26 C 1.52999 * 109.47492 * 240.00202 * 2 1 3 27 27 C 1.52996 * 117.49852 * 128.74293 * 26 2 1 28 28 C 1.52999 * 117.49765 * 60.08389 * 26 2 1 29 29 H 1.08997 * 109.47667 * 299.99726 * 1 2 3 30 30 H 1.09000 * 109.47038 * 60.00615 * 1 2 3 31 31 H 1.09006 * 109.46626 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46914 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.47518 * 299.99875 * 3 2 1 34 34 H 1.08999 * 109.47362 * 60.00320 * 3 2 1 35 35 H 1.09004 * 109.46984 * 180.02562 * 4 2 1 36 36 H 1.09006 * 109.47078 * 60.00676 * 4 2 1 37 37 H 0.97001 * 119.99627 * 359.97438 * 7 5 4 38 38 H 1.08997 * 109.47118 * 59.99282 * 8 7 5 39 39 H 1.09006 * 109.46890 * 299.99981 * 8 7 5 40 40 H 1.09004 * 110.82244 * 259.14397 * 11 9 8 41 41 H 1.08998 * 110.82295 * 22.49490 * 11 9 8 42 42 H 1.08997 * 111.16284 * 209.15773 * 12 11 9 43 43 H 1.08998 * 111.16024 * 84.89931 * 12 11 9 44 44 H 1.09003 * 113.51316 * 104.03729 * 14 13 12 45 45 H 1.09005 * 113.57184 * 333.46831 * 14 13 12 46 46 H 0.96995 * 120.00419 * 354.90735 * 19 18 16 47 47 H 1.09002 * 113.51029 * 88.27681 * 24 15 14 48 48 H 1.08999 * 113.51414 * 218.85324 * 24 15 14 49 49 H 1.08996 * 115.54661 * 274.41684 * 26 2 1 50 50 H 1.08995 * 117.50356 * 0.02562 * 27 26 2 51 51 H 1.09006 * 117.49245 * 145.02483 * 27 26 2 52 52 H 1.09001 * 117.49973 * 214.97930 * 28 26 2 53 53 H 1.09001 * 117.50383 * 359.97438 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5376 -0.0108 2.4797 6 8 0.8406 0.9755 2.3684 7 7 1.8636 -0.4709 3.7039 8 6 1.3747 0.2193 4.9000 9 6 1.8848 -0.5018 6.1492 10 1 2.9748 -0.5135 6.1502 11 6 1.3672 0.2126 7.4172 12 6 1.0380 -0.9790 8.3606 13 6 0.5873 -2.0380 7.3392 14 6 -0.9176 -2.1558 7.1306 15 7 -0.7313 -3.6139 7.0403 16 6 -1.3921 -4.6554 6.4456 17 1 -2.2135 -4.4596 5.7721 18 6 -1.0065 -5.9627 6.7083 19 7 -1.4192 -6.9398 5.9291 20 14 0.0984 -6.3351 8.1678 21 1 1.5197 -6.2639 7.7436 22 1 -0.1982 -7.6978 8.6780 23 1 -0.1481 -5.3399 9.2420 24 6 0.4729 -3.4631 7.8747 25 8 1.3834 -1.8468 6.1741 26 6 2.0401 -0.7212 -1.2492 27 6 3.0763 0.0041 -2.1100 28 6 1.6375 -0.1482 -2.6096 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 3.1300 -0.7207 1.2495 36 1 1.6767 -1.7489 1.2493 37 1 2.4213 -1.2596 3.7928 38 1 0.2848 0.2184 4.9000 39 1 1.7372 1.2473 4.9000 40 1 2.1423 0.8459 7.8489 41 1 0.4723 0.7944 7.1962 42 1 0.2303 -0.7258 9.0472 43 1 1.9244 -1.3079 8.9031 44 1 -1.2646 -1.7034 6.2015 45 1 -1.5033 -1.8449 7.9957 46 1 -2.0513 -6.7577 5.2162 47 1 0.2695 -3.5106 8.9445 48 1 1.2958 -4.1106 7.5718 49 1 2.1254 -1.8045 -1.1647 50 1 3.3950 0.9948 -1.7862 51 1 3.8432 -0.6023 -2.5921 52 1 1.4584 -0.8546 -3.4201 53 1 1.0089 0.7422 -2.6146 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733787872.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:05 Heat of formation + Delta-G solvation = -20.984413 kcal Electronic energy + Delta-G solvation = -30287.130019 eV Core-core repulsion = 26353.713859 eV Total energy + Delta-G solvation = -3933.416160 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.69120 -41.20461 -39.29924 -38.28794 -35.70590 -34.49060 -34.43851 -33.17108 -31.24699 -29.50318 -28.28876 -28.08668 -27.08105 -25.26591 -24.16705 -23.05866 -22.78723 -22.53379 -21.27038 -20.77814 -19.51549 -19.34316 -18.08578 -17.77450 -17.34806 -17.20227 -16.55055 -16.45594 -16.03198 -15.77426 -15.75173 -15.39009 -15.20820 -14.90581 -14.64554 -14.54427 -14.25220 -14.16911 -13.75928 -13.47288 -13.39201 -13.30071 -12.77145 -12.63534 -12.59736 -12.52365 -12.44950 -12.30411 -12.22815 -12.04327 -11.88112 -11.84093 -11.67655 -11.58486 -11.38148 -11.26048 -11.14793 -10.82612 -10.75613 -10.46051 -10.32678 -10.00987 -9.25518 -8.64554 -5.46501 1.38196 1.50886 1.66230 1.66475 2.20427 2.54843 2.68070 2.93746 3.04974 3.15247 3.44224 3.65981 3.68440 3.70092 3.78726 3.86737 3.97327 4.07311 4.18500 4.20988 4.28032 4.35348 4.40595 4.49037 4.54618 4.58190 4.59272 4.63528 4.64755 4.73561 4.76783 4.81041 4.82740 4.84518 4.90667 4.95231 5.01540 5.04683 5.09015 5.10522 5.14167 5.16018 5.20611 5.30735 5.33598 5.36306 5.39198 5.51214 5.66378 5.93122 6.26303 6.56454 6.68084 7.29431 7.32627 8.27226 8.87130 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.012365 B = 0.002886 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2263.968381 B = 9700.814270 C =11240.046441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.011 4.011 3 C -0.148 4.148 4 C -0.129 4.129 5 C 0.509 3.491 6 O -0.566 6.566 7 N -0.721 5.721 8 C 0.116 3.884 9 C 0.061 3.939 10 H 0.110 0.890 11 C -0.135 4.135 12 C -0.128 4.128 13 C 0.089 3.911 14 C 0.101 3.899 15 N -0.654 5.654 16 C -0.292 4.292 17 H 0.038 0.962 18 C -0.086 4.086 19 N -0.969 5.969 20 Si 1.106 2.894 21 H -0.278 1.278 22 H -0.301 1.301 23 H -0.246 1.246 24 C 0.099 3.901 25 O -0.364 6.364 26 C -0.153 4.153 27 C -0.174 4.174 28 C -0.181 4.181 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.040 0.960 32 H 0.063 0.937 33 H 0.053 0.947 34 H 0.062 0.938 35 H 0.117 0.883 36 H 0.094 0.906 37 H 0.410 0.590 38 H 0.041 0.959 39 H 0.091 0.909 40 H 0.119 0.881 41 H 0.081 0.919 42 H 0.102 0.898 43 H 0.102 0.898 44 H 0.028 0.972 45 H 0.069 0.931 46 H 0.243 0.757 47 H 0.082 0.918 48 H 0.046 0.954 49 H 0.104 0.896 50 H 0.104 0.896 51 H 0.101 0.899 52 H 0.098 0.902 53 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.659 20.501 -4.773 25.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.011 4.011 3 C -0.205 4.205 4 C -0.168 4.168 5 C 0.297 3.703 6 O -0.447 6.447 7 N -0.372 5.372 8 C -0.008 4.008 9 C 0.004 3.996 10 H 0.128 0.872 11 C -0.172 4.172 12 C -0.166 4.166 13 C 0.048 3.952 14 C -0.025 4.025 15 N -0.382 5.382 16 C -0.420 4.420 17 H 0.056 0.944 18 C -0.277 4.277 19 N -0.614 5.614 20 Si 0.930 3.070 21 H -0.205 1.205 22 H -0.229 1.229 23 H -0.170 1.170 24 C -0.025 4.025 25 O -0.283 6.283 26 C -0.171 4.171 27 C -0.211 4.211 28 C -0.218 4.218 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.059 0.941 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.135 0.865 36 H 0.112 0.888 37 H 0.246 0.754 38 H 0.060 0.940 39 H 0.109 0.891 40 H 0.137 0.863 41 H 0.100 0.900 42 H 0.121 0.879 43 H 0.121 0.879 44 H 0.046 0.954 45 H 0.087 0.913 46 H 0.052 0.948 47 H 0.100 0.900 48 H 0.064 0.936 49 H 0.122 0.878 50 H 0.122 0.878 51 H 0.119 0.881 52 H 0.116 0.884 53 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 14.868 19.685 -4.352 25.050 hybrid contribution -1.771 0.244 -1.298 2.209 sum 13.098 19.929 -5.650 24.508 Atomic orbital electron populations 1.22030 0.95409 1.00867 1.02307 1.19685 0.94764 0.95151 0.91497 1.22124 1.00734 0.95162 1.02449 1.21779 1.03740 1.00232 0.91091 1.21077 0.79567 0.84268 0.85386 1.90555 1.39174 1.28105 1.86849 1.45999 1.53502 1.32272 1.05469 1.21753 0.98485 0.96580 0.84009 1.23364 0.99703 0.81869 0.94679 0.87235 1.23103 1.03406 0.97841 0.92883 1.23012 1.03698 0.92881 0.97040 1.22824 0.90591 0.95490 0.86297 1.23007 0.96267 0.84228 0.98958 1.46170 1.29082 1.03631 1.59328 1.19909 1.14793 0.86545 1.20728 0.94422 1.27224 1.04633 0.90630 1.05248 1.71011 1.35110 1.34639 1.20635 0.83296 0.74403 0.75441 0.73894 1.20495 1.22922 1.17011 1.23045 0.89025 0.94679 0.95797 1.88340 1.66333 1.29981 1.43622 1.22306 1.04854 0.98961 0.91021 1.23208 0.92270 1.02634 1.02978 1.22975 0.98628 1.03285 0.96874 0.92233 0.92497 0.94117 0.91811 0.92757 0.91887 0.86502 0.88818 0.75442 0.94044 0.89082 0.86271 0.90033 0.87904 0.87912 0.95384 0.91318 0.94758 0.90045 0.93590 0.87751 0.87814 0.88059 0.88380 0.89130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.74 8.02 71.98 0.58 -3.16 16 2 C -0.01 -0.22 0.62 -52.18 -0.03 -0.25 16 3 C -0.15 -2.96 6.77 71.98 0.49 -2.48 16 4 C -0.13 -2.64 4.75 29.85 0.14 -2.49 16 5 C 0.51 13.17 7.24 87.65 0.63 13.81 16 6 O -0.57 -17.79 11.35 -3.03 -0.03 -17.82 16 7 N -0.72 -17.37 5.47 -463.08 -2.53 -19.90 16 8 C 0.12 2.69 5.24 86.38 0.45 3.14 16 9 C 0.06 1.28 3.61 31.09 0.11 1.39 16 10 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 11 C -0.13 -2.08 6.56 31.96 0.21 -1.87 16 12 C -0.13 -2.47 6.49 31.76 0.21 -2.27 16 13 C 0.09 2.85 1.56 -10.81 -0.02 2.84 16 14 C 0.10 3.98 8.24 83.47 0.69 4.67 16 15 N -0.65 -33.01 3.63 -739.92 -2.69 -35.70 16 16 C -0.29 -17.97 11.03 84.04 0.93 -17.04 16 17 H 0.04 2.55 8.06 -2.91 -0.02 2.52 16 18 C -0.09 -5.34 5.50 84.86 0.47 -4.87 16 19 N -0.97 -64.88 13.70 21.65 0.30 -64.58 16 20 Si 1.11 53.93 25.51 68.60 1.75 55.68 16 21 H -0.28 -12.81 6.97 99.48 0.69 -12.12 16 22 H -0.30 -14.87 7.11 99.48 0.71 -14.16 16 23 H -0.25 -10.35 5.64 99.48 0.56 -9.79 16 24 C 0.10 3.95 5.18 83.57 0.43 4.38 16 25 O -0.36 -11.77 10.69 -148.98 -1.59 -13.37 16 26 C -0.15 -2.67 5.15 -10.80 -0.06 -2.73 16 27 C -0.17 -2.49 9.57 30.62 0.29 -2.20 16 28 C -0.18 -2.88 9.38 30.62 0.29 -2.60 16 29 H 0.06 1.81 5.51 -2.39 -0.01 1.79 16 30 H 0.06 1.30 7.29 -2.39 -0.02 1.28 16 31 H 0.04 1.05 8.14 -2.38 -0.02 1.03 16 32 H 0.06 1.07 6.97 -2.38 -0.02 1.06 16 33 H 0.05 1.02 7.07 -2.39 -0.02 1.00 16 34 H 0.06 1.58 5.51 -2.39 -0.01 1.57 16 35 H 0.12 1.79 8.14 -2.38 -0.02 1.78 16 36 H 0.09 1.96 8.14 -2.38 -0.02 1.94 16 37 H 0.41 8.98 8.40 -92.71 -0.78 8.20 16 38 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.09 1.80 8.14 -2.38 -0.02 1.78 16 40 H 0.12 1.05 8.14 -2.38 -0.02 1.04 16 41 H 0.08 1.28 7.85 -2.39 -0.02 1.26 16 42 H 0.10 1.70 7.93 -2.39 -0.02 1.68 16 43 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.07 2.38 7.99 -2.38 -0.02 2.36 16 46 H 0.24 16.49 8.73 -92.71 -0.81 15.68 16 47 H 0.08 2.89 6.96 -2.39 -0.02 2.87 16 48 H 0.05 1.96 6.30 -2.39 -0.02 1.94 16 49 H 0.10 1.81 8.11 -2.39 -0.02 1.79 16 50 H 0.10 1.42 5.85 -2.39 -0.01 1.40 16 51 H 0.10 1.23 8.14 -2.38 -0.02 1.21 16 52 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 53 H 0.09 1.50 7.07 -2.39 -0.02 1.48 16 Total: -1.00 -80.63 400.16 0.93 -79.69 By element: Atomic # 1 Polarization: 27.80 SS G_CDS: -0.08 Total: 27.72 kcal Atomic # 6 Polarization: -17.53 SS G_CDS: 5.81 Total: -11.72 kcal Atomic # 7 Polarization: -115.26 SS G_CDS: -4.92 Total: -120.19 kcal Atomic # 8 Polarization: -29.56 SS G_CDS: -1.63 Total: -31.19 kcal Atomic # 14 Polarization: 53.93 SS G_CDS: 1.75 Total: 55.68 kcal Total: -80.63 0.93 -79.69 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733787872.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.709 kcal (2) G-P(sol) polarization free energy of solvation -80.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds