Wall clock time and date at job start Tue Mar 31 2020 20:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42903 * 113.99503 * 2 1 4 4 C 1.53011 * 109.46960 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47134 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47269 * 305.00382 * 5 4 3 7 7 O 1.42905 * 109.46921 * 64.99867 * 5 4 3 8 8 C 1.52997 * 109.47232 * 184.99986 * 5 4 3 9 9 N 1.46899 * 109.47254 * 180.02562 * 8 5 4 10 10 C 1.46904 * 111.00029 * 179.97438 * 9 8 5 11 11 C 1.50696 * 109.46800 * 180.02562 * 10 9 8 12 12 C 1.38279 * 119.92716 * 269.72682 * 11 10 9 13 13 C 1.38107 * 120.07614 * 179.73040 * 12 11 10 14 14 C 1.38914 * 119.92317 * 0.54944 * 13 12 11 15 15 N 1.39671 * 120.07292 * 179.75051 * 14 13 12 16 16 C 1.46505 * 119.99826 * 179.97438 * 15 14 13 17 17 C 1.46501 * 120.00271 * 359.97438 * 15 14 13 18 18 C 1.50698 * 109.47470 * 90.00058 * 17 15 14 19 19 H 1.07999 * 119.99725 * 359.97438 * 18 17 15 20 20 C 1.37881 * 120.00020 * 180.02562 * 18 17 15 21 21 N 1.31510 * 119.99801 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99765 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.46877 * 89.99918 * 22 20 18 24 24 H 1.48491 * 109.47095 * 209.99730 * 22 20 18 25 25 H 1.48503 * 109.47468 * 329.99873 * 22 20 18 26 26 C 1.38905 * 119.85059 * 359.72264 * 14 13 12 27 27 C 1.38109 * 119.92633 * 0.02562 * 26 14 13 28 28 H 1.09003 * 109.47161 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47172 * 299.99652 * 1 2 3 30 30 H 1.08998 * 109.47625 * 60.00043 * 1 2 3 31 31 H 1.09000 * 109.47440 * 60.00679 * 3 2 1 32 32 H 1.08998 * 109.47261 * 299.99637 * 3 2 1 33 33 H 1.09000 * 109.46772 * 59.99924 * 4 3 2 34 34 H 1.08994 * 109.46772 * 300.00177 * 4 3 2 35 35 H 1.09001 * 109.47362 * 180.02562 * 6 5 4 36 36 H 1.09002 * 109.46716 * 299.99747 * 6 5 4 37 37 H 1.09000 * 109.47486 * 59.99665 * 6 5 4 38 38 H 0.96696 * 114.00036 * 60.00010 * 7 5 4 39 39 H 1.09001 * 109.46832 * 300.00199 * 8 5 4 40 40 H 1.09002 * 109.47153 * 60.00008 * 8 5 4 41 41 H 1.00908 * 110.99847 * 56.04959 * 9 8 5 42 42 H 1.08995 * 109.47167 * 300.00240 * 10 9 8 43 43 H 1.09003 * 109.46442 * 60.00214 * 10 9 8 44 44 H 1.08000 * 119.96277 * 359.97438 * 12 11 10 45 45 H 1.08003 * 120.03966 * 180.27738 * 13 12 11 46 46 H 1.09001 * 109.46594 * 89.99838 * 16 15 14 47 47 H 1.09000 * 109.47193 * 209.99752 * 16 15 14 48 48 H 1.08997 * 109.47312 * 330.00391 * 16 15 14 49 49 H 1.09001 * 109.46987 * 209.99835 * 17 15 14 50 50 H 1.09003 * 109.47039 * 329.99638 * 17 15 14 51 51 H 0.96998 * 119.99649 * 179.97438 * 21 20 18 52 52 H 1.08003 * 120.04311 * 179.97438 * 26 14 13 53 53 H 1.07996 * 119.96576 * 179.97438 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 6 4.1576 2.5825 -0.0013 6 6 3.6086 3.3847 -1.1828 7 8 3.8317 3.2496 1.2198 8 6 5.6778 2.4640 -0.1276 9 7 6.2753 3.8060 -0.1277 10 6 7.7375 3.7313 -0.2472 11 6 8.3136 5.1238 -0.2430 12 6 8.4872 5.8021 -1.4355 13 6 9.0097 7.0805 -1.4348 14 6 9.3716 7.6806 -0.2353 15 7 9.9052 8.9714 -0.2315 16 6 10.2858 9.6028 1.0345 17 6 10.0842 9.6938 -1.4933 18 6 8.8375 10.4819 -1.8023 19 1 7.9957 10.4478 -1.1265 20 6 8.7710 11.2458 -2.9483 21 7 9.7959 11.2870 -3.7713 22 14 7.2253 12.2222 -3.3315 23 1 7.3343 13.5767 -2.7326 24 1 7.0683 12.3428 -4.8032 25 1 6.0446 11.5232 -2.7634 26 6 9.2011 6.9942 0.9602 27 6 8.6732 5.7180 0.9528 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.6885 1.8464 0.8900 32 1 1.6885 1.8464 -0.8900 33 1 3.8567 0.6441 -0.8909 34 1 3.8574 0.6437 0.8891 35 1 4.0522 4.3803 -1.1835 36 1 3.8572 2.8759 -2.1142 37 1 2.5256 3.4691 -1.0928 38 1 4.1494 2.7962 2.0126 39 1 6.0688 1.8926 0.7142 40 1 5.9264 1.9552 -1.0590 41 1 6.0061 4.3217 0.6969 42 1 8.1425 3.1684 0.5937 43 1 8.0007 3.2315 -1.1795 44 1 8.2102 5.3332 -2.3681 45 1 9.1408 7.6115 -2.3661 46 1 11.3264 9.3685 1.2589 47 1 10.1662 10.6831 0.9521 48 1 9.6481 9.2266 1.8344 49 1 10.9315 10.3739 -1.4056 50 1 10.2720 8.9812 -2.2965 51 1 9.7490 11.8241 -4.5777 52 1 9.4819 7.4576 1.8945 53 1 8.5408 5.1836 1.8819 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172071838.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:24 Heat of formation + Delta-G solvation = -90.939452 kcal Electronic energy + Delta-G solvation = -28673.231129 eV Core-core repulsion = 24736.781491 eV Total energy + Delta-G solvation = -3936.449638 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.49673 -40.01475 -38.51710 -37.60864 -35.79609 -34.69729 -33.74772 -31.86961 -31.48304 -29.83508 -29.55476 -27.78527 -27.26466 -26.47940 -25.34783 -23.77160 -23.05900 -22.98205 -21.24594 -20.91521 -18.63634 -18.20642 -17.69739 -17.52912 -17.08463 -16.93196 -16.59494 -16.06849 -15.94992 -15.79061 -15.68098 -15.37454 -15.26026 -14.99612 -14.51785 -14.42024 -14.27862 -14.09383 -13.94799 -13.36737 -13.21285 -13.15247 -13.09813 -12.97310 -12.86411 -12.74408 -12.67107 -12.53744 -12.49931 -12.24036 -12.22691 -12.16382 -11.92075 -11.74468 -11.49960 -11.38782 -10.83116 -10.64146 -10.59393 -10.39517 -9.64906 -9.19534 -8.35996 -7.79082 -6.37325 0.72992 0.85703 1.36095 1.37698 1.48875 2.34333 2.64217 2.68494 3.05775 3.07532 3.37188 3.62916 3.83440 3.94502 4.06660 4.12378 4.17874 4.23059 4.25293 4.34112 4.44357 4.49497 4.51679 4.54588 4.58178 4.66468 4.71860 4.74702 4.76163 4.79907 4.83684 4.88698 4.92348 4.95226 5.02994 5.05551 5.06261 5.14195 5.19437 5.21636 5.34450 5.48604 5.60317 5.67634 5.70898 5.95152 6.07430 6.15843 6.21047 6.26064 6.50887 6.55810 6.83182 6.90778 6.95042 7.34415 8.83096 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.012902 B = 0.002094 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.650900 B =13367.109389 C =14766.587916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.417 6.417 3 C 0.062 3.938 4 C -0.135 4.135 5 C 0.145 3.855 6 C -0.137 4.137 7 O -0.570 6.570 8 C 0.039 3.961 9 N -0.689 5.689 10 C 0.122 3.878 11 C -0.158 4.158 12 C -0.057 4.057 13 C -0.218 4.218 14 C 0.211 3.789 15 N -0.632 5.632 16 C 0.098 3.902 17 C 0.267 3.733 18 C -0.541 4.541 19 H 0.048 0.952 20 C 0.012 3.988 21 N -0.926 5.926 22 Si 0.961 3.039 23 H -0.270 1.270 24 H -0.278 1.278 25 H -0.273 1.273 26 C -0.218 4.218 27 C -0.061 4.061 28 H 0.098 0.902 29 H 0.047 0.953 30 H 0.046 0.954 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.056 0.944 36 H 0.074 0.926 37 H 0.056 0.944 38 H 0.386 0.614 39 H 0.046 0.954 40 H 0.082 0.918 41 H 0.345 0.655 42 H 0.048 0.952 43 H 0.075 0.925 44 H 0.120 0.880 45 H 0.093 0.907 46 H 0.053 0.947 47 H 0.055 0.945 48 H 0.078 0.922 49 H 0.009 0.991 50 H 0.011 0.989 51 H 0.267 0.733 52 H 0.133 0.867 53 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.096 -22.921 11.450 28.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.337 6.337 3 C -0.014 4.014 4 C -0.173 4.173 5 C 0.104 3.896 6 C -0.194 4.194 7 O -0.377 6.377 8 C -0.091 4.091 9 N -0.321 5.321 10 C -0.006 4.006 11 C -0.161 4.161 12 C -0.076 4.076 13 C -0.241 4.241 14 C 0.107 3.893 15 N -0.340 5.340 16 C -0.045 4.045 17 C 0.145 3.855 18 C -0.580 4.580 19 H 0.066 0.934 20 C -0.187 4.187 21 N -0.565 5.565 22 Si 0.786 3.214 23 H -0.195 1.195 24 H -0.203 1.203 25 H -0.198 1.198 26 C -0.240 4.240 27 C -0.080 4.080 28 H 0.116 0.884 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.075 0.925 36 H 0.093 0.907 37 H 0.075 0.925 38 H 0.235 0.765 39 H 0.065 0.935 40 H 0.101 0.899 41 H 0.164 0.836 42 H 0.066 0.934 43 H 0.093 0.907 44 H 0.138 0.862 45 H 0.111 0.889 46 H 0.071 0.929 47 H 0.074 0.926 48 H 0.097 0.903 49 H 0.027 0.973 50 H 0.029 0.971 51 H 0.076 0.924 52 H 0.150 0.850 53 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -12.195 -22.280 10.205 27.373 hybrid contribution -0.156 0.689 0.407 0.815 sum -12.351 -21.592 10.612 27.044 Atomic orbital electron populations 1.22901 0.79744 1.03764 1.00659 1.87803 1.21278 1.29022 1.95607 1.22572 0.94048 0.83978 1.00821 1.22090 0.93739 0.97046 1.04443 1.21081 0.92436 0.90462 0.85608 1.21716 1.00476 1.01014 0.96185 1.86593 1.81440 1.53646 1.16040 1.22593 0.93915 0.90370 1.02191 1.60379 1.08368 1.16118 1.47270 1.20608 0.86827 0.91844 1.01358 1.19530 1.06110 0.97905 0.92533 1.20794 0.95637 0.92637 0.98519 1.20793 1.08972 0.97638 0.96712 1.18234 0.91646 0.84861 0.94599 1.46955 1.66454 1.13144 1.07440 1.21599 0.99625 0.97830 0.85417 1.18765 0.95080 0.90347 0.81327 1.21775 1.01318 1.27971 1.06937 0.93370 1.25782 0.99583 0.97644 0.95723 1.70034 1.31968 1.41450 1.13082 0.85508 0.79444 0.78965 0.77489 1.19504 1.20345 1.19810 1.20788 1.10287 0.97160 0.95801 1.20927 0.95691 0.93536 0.97878 0.88403 0.93460 0.93509 0.92925 0.92900 0.89890 0.90045 0.92495 0.90715 0.92534 0.76450 0.93550 0.89919 0.83568 0.93402 0.90700 0.86188 0.88868 0.92909 0.92580 0.90339 0.97275 0.97141 0.92398 0.84957 0.83951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.54 16 2 O -0.42 -7.24 10.70 -148.98 -1.59 -8.83 16 3 C 0.06 0.94 5.35 71.99 0.38 1.33 16 4 C -0.13 -1.76 4.85 30.60 0.15 -1.61 16 5 C 0.14 2.17 0.85 -10.80 -0.01 2.16 16 6 C -0.14 -2.54 8.20 71.98 0.59 -1.95 16 7 O -0.57 -9.07 11.85 -148.98 -1.77 -10.84 16 8 C 0.04 0.57 4.83 86.30 0.42 0.99 16 9 N -0.69 -13.94 5.73 -517.93 -2.97 -16.90 16 10 C 0.12 2.55 5.81 85.55 0.50 3.05 16 11 C -0.16 -4.49 5.39 -19.84 -0.11 -4.60 16 12 C -0.06 -1.98 9.69 22.25 0.22 -1.76 16 13 C -0.22 -9.37 9.21 22.40 0.21 -9.16 16 14 C 0.21 8.77 6.55 38.21 0.25 9.02 16 15 N -0.63 -28.14 2.99 -726.55 -2.17 -30.32 16 16 C 0.10 3.45 10.19 127.77 1.30 4.76 16 17 C 0.27 14.27 4.91 85.63 0.42 14.69 16 18 C -0.54 -31.01 9.39 25.60 0.24 -30.77 16 19 H 0.05 2.81 7.81 -2.91 -0.02 2.78 16 20 C 0.01 0.68 5.46 84.66 0.46 1.14 16 21 N -0.93 -55.00 13.29 21.45 0.28 -54.71 16 22 Si 0.96 44.90 29.54 68.60 2.03 46.93 16 23 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 24 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 25 H -0.27 -12.69 7.11 99.48 0.71 -11.99 16 26 C -0.22 -7.18 9.21 22.40 0.21 -6.97 16 27 C -0.06 -1.69 9.69 22.25 0.22 -1.48 16 28 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.05 0.82 7.82 -2.39 -0.02 0.80 16 32 H 0.05 0.81 6.34 -2.39 -0.02 0.79 16 33 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.06 1.36 7.60 -2.39 -0.02 1.34 16 36 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.06 1.01 6.34 -2.39 -0.02 1.00 16 38 H 0.39 3.36 9.05 -74.06 -0.67 2.69 16 39 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 40 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.35 7.31 8.11 -89.69 -0.73 6.59 16 42 H 0.05 0.83 8.08 -2.39 -0.02 0.81 16 43 H 0.07 1.54 8.08 -2.39 -0.02 1.52 16 44 H 0.12 3.85 8.06 -2.91 -0.02 3.82 16 45 H 0.09 4.62 6.14 -2.91 -0.02 4.61 16 46 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 47 H 0.06 2.05 8.07 -2.39 -0.02 2.03 16 48 H 0.08 2.34 6.20 -2.39 -0.01 2.32 16 49 H 0.01 0.52 8.07 -2.39 -0.02 0.50 16 50 H 0.01 0.61 6.20 -2.39 -0.01 0.60 16 51 H 0.27 14.92 8.31 -92.71 -0.77 14.14 16 52 H 0.13 3.77 6.14 -2.91 -0.02 3.75 16 53 H 0.14 2.88 8.06 -2.91 -0.02 2.86 16 Total: -1.00 -68.36 423.78 0.00 -68.36 By element: Atomic # 1 Polarization: 26.45 SS G_CDS: -0.50 Total: 25.94 kcal Atomic # 6 Polarization: -26.32 SS G_CDS: 6.69 Total: -19.63 kcal Atomic # 7 Polarization: -97.08 SS G_CDS: -4.85 Total: -101.93 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: -3.36 Total: -19.67 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -68.36 0.00 -68.36 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172071838.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.580 kcal (2) G-P(sol) polarization free energy of solvation -68.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds