Wall clock time and date at job start Tue Mar 31 2020 20:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46719 * 2 1 4 4 C 1.52998 * 109.47053 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.47760 * 305.00329 * 4 3 2 6 6 C 1.52996 * 109.47294 * 185.00054 * 4 3 2 7 7 N 1.46505 * 109.46829 * 65.00408 * 4 3 2 8 8 C 1.46766 * 124.34814 * 239.72411 * 7 4 3 9 9 C 1.54666 * 105.37759 * 162.85397 * 8 7 4 10 10 H 1.08993 * 111.19058 * 267.58919 * 9 8 7 11 11 C 1.50703 * 110.81804 * 143.77780 * 9 8 7 12 12 O 1.21287 * 119.99918 * 340.93565 * 11 9 8 13 13 N 1.34775 * 119.99756 * 160.93457 * 11 9 8 14 14 C 1.46492 * 120.00395 * 5.13840 * 13 11 9 15 15 C 1.50706 * 109.47128 * 89.99520 * 14 13 11 16 16 H 1.08000 * 119.99754 * 0.02562 * 15 14 13 17 17 C 1.37874 * 120.00096 * 179.97438 * 15 14 13 18 18 N 1.31515 * 120.00081 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 119.99945 * 0.02562 * 17 15 14 20 20 H 1.48493 * 109.47268 * 89.99855 * 19 17 15 21 21 H 1.48508 * 109.47146 * 209.99803 * 19 17 15 22 22 H 1.48502 * 109.47280 * 329.99529 * 19 17 15 23 23 C 1.46506 * 119.99628 * 185.13702 * 13 11 9 24 24 C 1.52998 * 109.47008 * 88.20518 * 23 13 11 25 25 C 1.52999 * 117.49691 * 245.32931 * 24 23 13 26 26 C 1.53000 * 117.49882 * 176.66761 * 24 23 13 27 27 C 1.54621 * 101.68550 * 25.76756 * 9 8 7 28 28 C 1.34421 * 124.34741 * 60.02298 * 7 4 3 29 29 O 1.21279 * 124.94448 * 0.38641 * 28 7 4 30 30 H 1.09006 * 109.47275 * 60.00209 * 1 2 3 31 31 H 1.09011 * 109.46971 * 179.97438 * 1 2 3 32 32 H 1.08991 * 109.47629 * 299.99550 * 1 2 3 33 33 H 1.08997 * 109.47381 * 120.00022 * 2 1 3 34 34 H 1.09004 * 109.47404 * 240.00326 * 2 1 3 35 35 H 1.08997 * 109.47212 * 300.00126 * 3 2 1 36 36 H 1.09004 * 109.46916 * 60.00028 * 3 2 1 37 37 H 1.08999 * 109.46853 * 60.00621 * 6 4 3 38 38 H 1.09004 * 109.47211 * 180.02562 * 6 4 3 39 39 H 1.08999 * 109.47233 * 300.00322 * 6 4 3 40 40 H 1.08997 * 110.24645 * 281.98140 * 8 7 4 41 41 H 1.08994 * 110.24714 * 43.98440 * 8 7 4 42 42 H 1.08995 * 109.47645 * 209.99711 * 14 13 11 43 43 H 1.09000 * 109.47007 * 330.00191 * 14 13 11 44 44 H 0.96999 * 119.99780 * 180.02562 * 18 17 15 45 45 H 1.09006 * 109.46650 * 208.20352 * 23 13 11 46 46 H 1.08994 * 109.47373 * 328.20137 * 23 13 11 47 47 H 1.09000 * 115.55231 * 30.99802 * 24 23 13 48 48 H 1.09001 * 117.50243 * 359.97438 * 25 24 23 49 49 H 1.09002 * 117.49939 * 145.02520 * 25 24 23 50 50 H 1.09000 * 117.50250 * 214.97441 * 26 24 23 51 51 H 1.09006 * 117.49613 * 359.97438 * 26 24 23 52 52 H 1.09005 * 110.48404 * 216.30562 * 27 9 8 53 53 H 1.09006 * 110.48539 * 93.66848 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4427 0.0006 5 1 3.9330 0.8533 0.8426 6 6 4.0798 2.8797 0.1264 7 7 4.0587 0.8588 -1.2510 8 6 4.9108 -0.3335 -1.3313 9 6 4.8015 -0.8177 -2.7961 10 1 4.0081 -1.5565 -2.9087 11 6 6.1194 -1.3670 -3.2784 12 8 7.1448 -1.0807 -2.6973 13 7 6.1585 -2.1763 -4.3554 14 6 4.9381 -2.4320 -5.1243 15 6 4.8078 -1.4023 -6.2170 16 1 5.5592 -0.6345 -6.3278 17 6 3.7299 -1.4411 -7.0758 18 7 3.6164 -0.5428 -8.0297 19 14 2.4306 -2.7695 -6.8845 20 1 1.3655 -2.2917 -5.9666 21 1 1.8389 -3.0780 -8.2112 22 1 3.0543 -3.9950 -6.3237 23 6 7.4216 -2.8003 -4.7572 24 6 7.5898 -4.1311 -4.0212 25 6 8.7435 -4.2452 -3.0228 26 6 8.8167 -4.9782 -4.3647 27 6 4.4453 0.4937 -3.5338 28 6 3.7891 1.3497 -2.4730 29 8 3.1173 2.3351 -2.6931 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 -0.3634 0.5137 0.8899 33 1 1.8933 -0.5138 0.8899 34 1 1.8934 -0.5138 -0.8900 35 1 1.6765 1.9564 -0.8899 36 1 1.6765 1.9564 0.8900 37 1 3.7161 3.3140 1.0576 38 1 5.1698 2.8797 0.1264 39 1 3.7167 3.4690 -0.7156 40 1 5.9427 -0.0764 -1.0921 41 1 4.5461 -1.1041 -0.6523 42 1 4.9890 -3.4268 -5.5667 43 1 4.0732 -2.3720 -4.4636 44 1 2.8579 -0.5699 -8.6336 45 1 7.4129 -2.9784 -5.8326 46 1 8.2502 -2.1385 -4.5052 47 1 6.6652 -4.6574 -3.7842 48 1 9.3830 -3.3725 -2.8906 49 1 8.5781 -4.8470 -2.1292 50 1 8.6994 -6.0618 -4.3532 51 1 9.5038 -4.5877 -5.1154 52 1 3.7491 0.2959 -4.3489 53 1 5.3472 0.9768 -3.9099 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349389263.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:18 Heat of formation + Delta-G solvation = -70.244086 kcal Electronic energy + Delta-G solvation = -31139.226715 eV Core-core repulsion = 27203.674496 eV Total energy + Delta-G solvation = -3935.552219 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.01696 -40.56799 -38.29394 -37.60420 -36.58164 -36.46014 -34.42451 -33.76844 -31.14868 -30.12788 -28.88026 -27.82565 -27.57657 -24.65360 -23.86488 -23.42226 -23.13231 -22.28944 -21.51667 -19.92188 -19.83282 -18.99048 -18.53515 -17.77810 -17.38696 -16.78574 -16.39931 -16.27100 -15.88061 -15.65366 -15.57457 -15.07434 -14.91779 -14.80524 -14.64445 -14.57118 -14.40931 -13.96436 -13.85771 -13.69004 -13.54506 -13.37833 -13.03905 -12.88114 -12.85467 -12.63056 -12.60250 -12.46832 -12.35344 -12.28878 -12.21040 -12.00906 -11.86753 -11.67455 -11.60517 -11.54944 -11.28077 -10.94577 -10.79510 -10.71804 -10.49848 -9.66159 -9.43566 -8.26103 -6.32324 1.40575 1.41938 1.49986 1.50543 1.64330 1.93738 2.23618 2.36046 2.97754 3.08323 3.27195 3.48651 3.68796 3.78818 3.88733 3.92103 4.04093 4.05593 4.09785 4.15531 4.19636 4.34374 4.42585 4.43349 4.54060 4.60226 4.61370 4.67966 4.74500 4.75811 4.79516 4.80115 4.84452 4.88251 4.93606 4.97308 4.98372 5.03369 5.04903 5.07009 5.25035 5.28124 5.31798 5.32453 5.34753 5.45307 5.47484 5.69375 5.74354 6.09094 6.21195 6.60732 6.74514 7.15136 7.23274 7.35240 8.89865 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.008667 B = 0.004480 C = 0.003506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3230.038693 B = 6248.274224 C = 7985.423804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C -0.132 4.132 4 C 0.151 3.849 5 H 0.122 0.878 6 C -0.165 4.165 7 N -0.603 5.603 8 C 0.125 3.875 9 C -0.111 4.111 10 H 0.124 0.876 11 C 0.531 3.469 12 O -0.576 6.576 13 N -0.588 5.588 14 C 0.215 3.785 15 C -0.530 4.530 16 H 0.031 0.969 17 C 0.021 3.979 18 N -0.942 5.942 19 Si 0.930 3.070 20 H -0.266 1.266 21 H -0.290 1.290 22 H -0.231 1.231 23 C 0.148 3.852 24 C -0.177 4.177 25 C -0.170 4.170 26 C -0.162 4.162 27 C -0.128 4.128 28 C 0.521 3.479 29 O -0.567 6.567 30 H 0.034 0.966 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.083 0.917 34 H 0.044 0.956 35 H 0.043 0.957 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.055 0.945 39 H 0.038 0.962 40 H 0.085 0.915 41 H 0.115 0.885 42 H 0.048 0.952 43 H 0.050 0.950 44 H 0.265 0.735 45 H 0.075 0.925 46 H 0.064 0.936 47 H 0.105 0.895 48 H 0.084 0.916 49 H 0.102 0.898 50 H 0.111 0.889 51 H 0.097 0.903 52 H 0.096 0.904 53 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.677 -7.117 18.824 20.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.157 4.157 3 C -0.171 4.171 4 C 0.050 3.950 5 H 0.140 0.860 6 C -0.223 4.223 7 N -0.336 5.336 8 C 0.002 3.998 9 C -0.133 4.133 10 H 0.142 0.858 11 C 0.319 3.681 12 O -0.457 6.457 13 N -0.316 5.316 14 C 0.093 3.907 15 C -0.568 4.568 16 H 0.050 0.950 17 C -0.178 4.178 18 N -0.581 5.581 19 Si 0.753 3.247 20 H -0.191 1.191 21 H -0.216 1.216 22 H -0.154 1.154 23 C 0.025 3.975 24 C -0.196 4.196 25 C -0.207 4.207 26 C -0.199 4.199 27 C -0.169 4.169 28 C 0.310 3.690 29 O -0.447 6.447 30 H 0.053 0.947 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.102 0.898 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.112 0.888 37 H 0.111 0.889 38 H 0.075 0.925 39 H 0.057 0.943 40 H 0.103 0.897 41 H 0.133 0.867 42 H 0.066 0.934 43 H 0.067 0.933 44 H 0.075 0.925 45 H 0.094 0.906 46 H 0.083 0.917 47 H 0.123 0.877 48 H 0.103 0.897 49 H 0.121 0.879 50 H 0.130 0.870 51 H 0.115 0.885 52 H 0.115 0.885 53 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.736 -6.396 18.938 20.003 hybrid contribution -0.625 0.195 -1.294 1.450 sum 0.112 -6.202 17.644 18.703 Atomic orbital electron populations 1.21751 0.95729 1.01880 1.01458 1.21487 0.96075 0.96036 1.02128 1.22009 0.94243 0.98046 1.02760 1.21289 0.94130 0.94834 0.84766 0.86023 1.22151 1.01215 0.96080 1.02811 1.48466 1.50124 1.29170 1.05873 1.22130 0.95965 0.87196 0.94509 1.22170 0.96937 0.97795 0.96370 0.85807 1.20156 0.90281 0.77606 0.80022 1.90594 1.36035 1.60448 1.58625 1.47855 1.10795 1.45744 1.27218 1.19711 0.83415 0.96707 0.90899 1.21438 1.08225 1.13215 1.13951 0.95048 1.25716 1.00071 0.97750 0.94273 1.70055 1.31615 1.37155 1.19318 0.85977 0.79693 0.80940 0.78080 1.19095 1.21649 1.15404 1.20930 0.85689 0.92200 0.98646 1.22619 0.94610 0.97750 1.04670 1.22993 1.01035 1.02728 0.93960 1.23031 0.99140 0.99088 0.98634 1.22070 1.02209 0.94627 0.97956 1.20838 0.79111 0.83898 0.85186 1.90636 1.41397 1.28042 1.84587 0.94659 0.92119 0.91520 0.89842 0.93693 0.93779 0.88824 0.88906 0.92550 0.94265 0.89682 0.86692 0.93436 0.93264 0.92548 0.90627 0.91723 0.87695 0.89743 0.87937 0.87050 0.88470 0.88520 0.89983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 9.91 71.98 0.71 -2.08 16 2 C -0.12 -2.29 5.82 30.59 0.18 -2.11 16 3 C -0.13 -2.82 4.64 30.59 0.14 -2.67 16 4 C 0.15 3.17 2.87 44.99 0.13 3.30 16 5 H 0.12 1.76 8.07 -2.39 -0.02 1.74 16 6 C -0.16 -3.63 9.20 71.98 0.66 -2.97 16 7 N -0.60 -16.36 2.28 -793.67 -1.81 -18.17 16 8 C 0.12 3.08 6.78 86.90 0.59 3.67 16 9 C -0.11 -3.46 2.68 -10.42 -0.03 -3.49 16 10 H 0.12 3.49 6.39 -2.39 -0.02 3.47 16 11 C 0.53 19.00 6.81 87.66 0.60 19.60 16 12 O -0.58 -22.31 15.16 -3.05 -0.05 -22.36 16 13 N -0.59 -21.53 2.46 -826.15 -2.03 -23.56 16 14 C 0.21 8.48 4.10 85.64 0.35 8.83 16 15 C -0.53 -26.80 8.90 25.60 0.23 -26.57 16 16 H 0.03 1.86 8.06 -2.91 -0.02 1.83 16 17 C 0.02 1.10 5.47 84.65 0.46 1.56 16 18 N -0.94 -55.69 13.96 21.45 0.30 -55.39 16 19 Si 0.93 38.94 27.47 68.60 1.88 40.82 16 20 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 21 H -0.29 -12.50 7.11 99.48 0.71 -11.79 16 22 H -0.23 -8.41 6.54 99.48 0.65 -7.76 16 23 C 0.15 4.92 5.71 86.38 0.49 5.41 16 24 C -0.18 -4.68 6.00 -10.79 -0.06 -4.74 16 25 C -0.17 -3.94 10.18 30.62 0.31 -3.63 16 26 C -0.16 -3.38 10.25 30.62 0.31 -3.06 16 27 C -0.13 -4.85 6.00 30.59 0.18 -4.67 16 28 C 0.52 18.91 7.39 87.90 0.65 19.56 16 29 O -0.57 -24.42 15.07 -3.03 -0.05 -24.46 16 30 H 0.03 0.78 8.14 -2.38 -0.02 0.76 16 31 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 32 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.04 1.03 7.75 -2.38 -0.02 1.01 16 35 H 0.04 1.29 6.65 -2.39 -0.02 1.28 16 36 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 37 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.04 1.14 6.77 -2.39 -0.02 1.12 16 40 H 0.09 2.28 6.86 -2.39 -0.02 2.26 16 41 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.05 1.80 7.13 -2.39 -0.02 1.79 16 43 H 0.05 1.79 5.31 -2.39 -0.01 1.78 16 44 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 45 H 0.08 2.60 8.06 -2.38 -0.02 2.58 16 46 H 0.06 2.27 7.15 -2.39 -0.02 2.26 16 47 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 48 H 0.08 2.15 8.04 -2.39 -0.02 2.13 16 49 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 50 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 51 H 0.10 1.97 8.14 -2.38 -0.02 1.95 16 52 H 0.10 4.22 7.49 -2.38 -0.02 4.20 16 53 H 0.08 3.42 7.89 -2.38 -0.02 3.40 16 Total: -1.00 -68.17 417.48 4.97 -63.20 By element: Atomic # 1 Polarization: 33.17 SS G_CDS: 0.81 Total: 33.98 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: 5.91 Total: 5.94 kcal Atomic # 7 Polarization: -93.58 SS G_CDS: -3.54 Total: -97.12 kcal Atomic # 8 Polarization: -46.73 SS G_CDS: -0.09 Total: -46.82 kcal Atomic # 14 Polarization: 38.94 SS G_CDS: 1.88 Total: 40.82 kcal Total: -68.17 4.97 -63.20 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349389263.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.045 kcal (2) G-P(sol) polarization free energy of solvation -68.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds