Wall clock time and date at job start Tue Mar 31 2020 20:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47081 * 2 1 4 4 C 1.50697 * 109.46717 * 240.00285 * 2 1 3 5 5 H 1.08001 * 119.99764 * 239.99855 * 4 2 1 6 6 C 1.37879 * 120.00363 * 59.99922 * 4 2 1 7 7 N 1.31512 * 119.99529 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00189 * 179.97438 * 6 4 2 9 9 H 1.48491 * 109.47220 * 90.00021 * 8 6 4 10 10 H 1.48507 * 109.47100 * 210.00066 * 8 6 4 11 11 H 1.48506 * 109.47043 * 329.99852 * 8 6 4 12 12 C 1.52999 * 109.47297 * 120.00417 * 2 1 3 13 13 N 1.46501 * 109.46677 * 299.99691 * 12 2 1 14 14 C 1.34783 * 119.99700 * 180.02562 * 13 12 2 15 15 O 1.21346 * 119.99758 * 0.02562 * 14 13 12 16 16 C 1.49452 * 120.00008 * 180.02562 * 14 13 12 17 17 O 1.21348 * 119.99603 * 359.97438 * 16 14 13 18 18 N 1.34770 * 119.99820 * 180.02562 * 16 14 13 19 19 C 1.46502 * 119.99842 * 179.97438 * 18 16 14 20 20 H 1.08995 * 109.84491 * 34.06266 * 19 18 16 21 21 C 1.52829 * 109.90630 * 273.08899 * 19 18 16 22 22 C 1.51065 * 110.77395 * 304.30013 * 21 19 18 23 23 C 1.49182 * 117.42892 * 326.47128 * 22 21 19 24 24 H 1.09003 * 106.25120 * 124.38703 * 23 22 21 25 25 C 1.54701 * 110.94125 * 237.69595 * 23 22 21 26 26 C 1.55236 * 103.43370 * 157.92379 * 25 23 22 27 27 C 1.55227 * 102.17269 * 320.89171 * 26 25 23 28 28 C 1.50833 * 120.52569 * 3.89236 * 23 22 21 29 29 H 1.09006 * 107.24703 * 116.42197 * 28 23 22 30 30 C 1.51094 * 116.58417 * 355.23360 * 28 23 22 31 31 H 1.09002 * 109.46981 * 299.99637 * 1 2 3 32 32 H 1.08998 * 109.47607 * 59.99784 * 1 2 3 33 33 H 1.08996 * 109.47025 * 180.02562 * 1 2 3 34 34 H 1.08991 * 109.47358 * 180.02562 * 3 2 1 35 35 H 1.08998 * 109.47076 * 300.00541 * 3 2 1 36 36 H 1.09002 * 109.46916 * 60.00323 * 3 2 1 37 37 H 0.97008 * 119.99626 * 180.02562 * 7 6 4 38 38 H 1.09001 * 109.46937 * 180.02562 * 12 2 1 39 39 H 1.08996 * 109.47482 * 59.99791 * 12 2 1 40 40 H 0.96998 * 120.00566 * 0.02562 * 13 12 2 41 41 H 0.97001 * 120.00712 * 359.97438 * 18 16 14 42 42 H 1.09003 * 109.21399 * 64.63134 * 21 19 18 43 43 H 1.08999 * 109.21528 * 183.96071 * 21 19 18 44 44 H 1.08997 * 107.85526 * 88.48323 * 22 21 19 45 45 H 1.09001 * 107.85080 * 204.46952 * 22 21 19 46 46 H 1.09003 * 110.62538 * 39.43884 * 25 23 22 47 47 H 1.08989 * 110.63256 * 276.40805 * 25 23 22 48 48 H 1.09003 * 110.85974 * 202.72598 * 26 25 23 49 49 H 1.08997 * 110.86585 * 79.06283 * 26 25 23 50 50 H 1.09001 * 110.61435 * 157.53202 * 27 26 25 51 51 H 1.09000 * 110.62076 * 280.37454 * 27 26 25 52 52 H 1.09004 * 109.23400 * 155.58125 * 30 28 23 53 53 H 1.09006 * 109.23193 * 274.98421 * 30 28 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6991 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6033 8 14 2.3223 -1.1194 -4.0080 9 1 1.3447 -2.1614 -4.4124 10 1 2.4871 -0.1400 -5.1121 11 1 3.6307 -1.7565 -3.7121 12 6 2.0401 -0.7213 1.2492 13 7 1.5518 -0.0307 2.4453 14 6 1.8778 -0.4909 3.6695 15 8 2.5762 -1.4770 3.7807 16 6 1.3793 0.2132 4.8898 17 8 0.6813 1.1996 4.7784 18 7 1.7057 -0.2467 6.1138 19 6 1.2175 0.4439 7.3100 20 1 0.2245 0.8523 7.1221 21 6 2.1785 1.5700 7.6894 22 6 3.5802 1.0383 7.8754 23 6 3.7247 -0.3405 8.4264 24 1 4.3266 -0.8951 7.7065 25 6 4.5690 -0.3322 9.7227 26 6 4.1469 -1.6446 10.4363 27 6 2.6213 -1.6945 10.1543 28 6 2.5074 -1.1891 8.6962 29 1 2.5650 -2.0557 8.0375 30 6 1.1638 -0.5305 8.4862 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0276 0.0005 34 1 3.1299 1.4426 -0.0005 35 1 1.6766 1.9563 -0.8899 36 1 1.6767 1.9563 0.8900 37 1 0.7080 1.1609 -3.4844 38 1 3.1301 -0.7209 1.2493 39 1 1.6768 -1.7490 1.2492 40 1 0.9938 0.7578 2.3564 41 1 2.2640 -1.0349 6.2028 42 1 2.1814 2.3207 6.8991 43 1 1.8429 2.0301 8.6189 44 1 4.0790 1.0651 6.9066 45 1 4.1111 1.7207 8.5392 46 1 4.3226 0.5347 10.3359 47 1 5.6332 -0.3479 9.4880 48 1 4.3420 -1.5842 11.5071 49 1 4.6513 -2.5050 9.9967 50 1 2.2490 -2.7156 10.2370 51 1 2.0833 -1.0347 10.8350 52 1 0.4159 -1.2971 8.2835 53 1 0.8852 0.0128 9.3892 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000422363692.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:30 Heat of formation + Delta-G solvation = -115.172124 kcal Electronic energy + Delta-G solvation = -30189.155748 eV Core-core repulsion = 26251.655303 eV Total energy + Delta-G solvation = -3937.500445 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.98949 -40.86353 -39.50343 -38.20041 -36.77949 -35.09752 -33.76734 -32.76707 -32.62614 -29.61883 -28.14747 -27.60010 -27.59851 -27.16157 -25.02705 -23.56924 -22.28711 -21.85489 -21.29591 -20.71465 -19.74391 -18.91861 -17.99892 -17.57783 -17.32765 -17.07826 -16.67774 -16.38658 -16.07636 -15.86804 -15.44641 -15.25387 -14.98180 -14.90451 -14.75374 -14.35318 -14.31737 -14.05842 -13.73318 -13.22526 -13.14080 -13.02999 -12.95111 -12.88899 -12.71530 -12.70126 -12.59161 -12.28892 -12.27909 -12.12543 -11.81732 -11.59920 -11.51919 -11.46007 -11.31301 -11.19276 -11.09278 -10.89288 -10.76174 -10.60418 -10.41695 -10.20988 -10.11362 -8.02053 -6.18554 0.36121 1.38289 1.43978 1.47143 1.55167 2.15857 2.45111 2.73312 3.21738 3.43903 3.54545 3.56787 3.66996 4.00554 4.05113 4.19532 4.25039 4.33069 4.33568 4.45057 4.45756 4.56445 4.66548 4.76285 4.82462 4.84752 4.89105 4.91187 4.93742 5.00756 5.02749 5.04759 5.05302 5.07870 5.15936 5.19047 5.20897 5.22784 5.25587 5.39702 5.42886 5.47092 5.51264 5.55227 5.60628 5.63655 5.66852 5.98482 6.10071 6.17919 6.39453 6.41197 6.75573 6.86017 6.97521 7.49323 8.97247 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.025511 B = 0.002195 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.282706 B =12751.437336 C =13122.022393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.050 3.950 3 C -0.123 4.123 4 C -0.525 4.525 5 H 0.051 0.949 6 C 0.026 3.974 7 N -0.901 5.901 8 Si 0.949 3.051 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.273 1.273 12 C 0.143 3.857 13 N -0.681 5.681 14 C 0.495 3.505 15 O -0.553 6.553 16 C 0.513 3.487 17 O -0.541 6.541 18 N -0.678 5.678 19 C 0.140 3.860 20 H 0.089 0.911 21 C -0.123 4.123 22 C -0.101 4.101 23 C -0.082 4.082 24 H 0.042 0.958 25 C -0.118 4.118 26 C -0.129 4.129 27 C -0.114 4.114 28 C -0.084 4.084 29 H 0.056 0.944 30 C -0.109 4.109 31 H 0.029 0.971 32 H 0.064 0.936 33 H 0.023 0.977 34 H 0.023 0.977 35 H 0.064 0.936 36 H 0.029 0.971 37 H 0.260 0.740 38 H 0.053 0.947 39 H 0.054 0.946 40 H 0.413 0.587 41 H 0.414 0.586 42 H 0.049 0.951 43 H 0.096 0.904 44 H 0.034 0.966 45 H 0.072 0.928 46 H 0.074 0.926 47 H 0.061 0.939 48 H 0.075 0.925 49 H 0.061 0.939 50 H 0.068 0.932 51 H 0.079 0.921 52 H 0.075 0.925 53 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.398 -1.033 28.187 28.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.049 3.951 3 C -0.181 4.181 4 C -0.564 4.564 5 H 0.069 0.931 6 C -0.174 4.174 7 N -0.539 5.539 8 Si 0.776 3.224 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.198 1.198 12 C 0.021 3.979 13 N -0.333 5.333 14 C 0.275 3.725 15 O -0.432 6.432 16 C 0.293 3.707 17 O -0.419 6.419 18 N -0.331 5.331 19 C 0.037 3.963 20 H 0.107 0.893 21 C -0.161 4.161 22 C -0.139 4.139 23 C -0.101 4.101 24 H 0.061 0.939 25 C -0.156 4.156 26 C -0.166 4.166 27 C -0.151 4.151 28 C -0.103 4.103 29 H 0.075 0.925 30 C -0.147 4.147 31 H 0.048 0.952 32 H 0.083 0.917 33 H 0.042 0.958 34 H 0.042 0.958 35 H 0.083 0.917 36 H 0.048 0.952 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.251 0.749 41 H 0.252 0.748 42 H 0.067 0.933 43 H 0.114 0.886 44 H 0.053 0.947 45 H 0.090 0.910 46 H 0.093 0.907 47 H 0.079 0.921 48 H 0.094 0.906 49 H 0.080 0.920 50 H 0.087 0.913 51 H 0.098 0.902 52 H 0.094 0.906 53 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 2.339 -0.921 28.029 28.142 hybrid contribution 0.490 -0.430 -1.553 1.684 sum 2.828 -1.350 26.477 26.661 Atomic orbital electron populations 1.21704 0.97306 0.98903 1.00220 1.18386 0.93185 0.93003 0.90501 1.21701 0.98188 0.98034 1.00207 1.21229 1.31790 1.12242 0.91142 0.93089 1.25507 0.95153 0.95580 1.01175 1.69928 1.36997 1.23370 1.23644 0.85700 0.78713 0.78368 0.79666 1.20481 1.21059 1.19809 1.21541 0.97835 0.95494 0.83069 1.46074 1.50741 1.31467 1.05029 1.20455 0.81677 0.84897 0.85425 1.90704 1.38570 1.26795 1.87148 1.19979 0.81091 0.84395 0.85198 1.90740 1.37925 1.26220 1.86993 1.45842 1.51459 1.31669 1.04152 1.21201 0.98243 0.93684 0.83222 0.89261 1.21473 0.95143 0.97153 1.02379 1.20247 0.96912 0.96395 1.00304 1.20310 0.96488 0.95214 0.98059 0.93941 1.22758 0.98846 0.98490 0.95479 1.22608 0.96061 0.97333 1.00640 1.22651 0.96380 1.01420 0.94654 1.20734 0.93534 0.97732 0.98321 0.92544 1.21471 0.97265 0.98621 0.97337 0.95183 0.91744 0.95762 0.95809 0.91744 0.95203 0.93037 0.92873 0.92757 0.74923 0.74850 0.93254 0.88564 0.94734 0.90953 0.90746 0.92051 0.90605 0.92009 0.91284 0.90242 0.90636 0.87958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.68 8.08 71.98 0.58 -5.10 16 2 C 0.05 2.34 0.50 -52.93 -0.03 2.31 16 3 C -0.12 -5.69 8.08 71.98 0.58 -5.11 16 4 C -0.53 -27.55 8.01 25.60 0.21 -27.34 16 5 H 0.05 2.68 7.74 -2.91 -0.02 2.66 16 6 C 0.03 1.35 5.15 84.66 0.44 1.78 16 7 N -0.90 -48.54 9.35 21.45 0.20 -48.34 16 8 Si 0.95 42.47 29.54 68.60 2.03 44.49 16 9 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 10 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 11 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 12 C 0.14 6.06 4.50 86.38 0.39 6.45 16 13 N -0.68 -25.32 4.95 -464.41 -2.30 -27.62 16 14 C 0.49 17.37 7.89 87.27 0.69 18.06 16 15 O -0.55 -21.22 16.48 -3.23 -0.05 -21.27 16 16 C 0.51 15.46 7.88 87.27 0.69 16.15 16 17 O -0.54 -18.21 16.13 -3.24 -0.05 -18.26 16 18 N -0.68 -15.47 4.45 -444.41 -1.98 -17.45 16 19 C 0.14 2.43 2.88 44.88 0.13 2.56 16 20 H 0.09 1.72 7.57 -2.39 -0.02 1.71 16 21 C -0.12 -2.00 5.63 29.91 0.17 -1.84 16 22 C -0.10 -1.60 5.12 28.75 0.15 -1.45 16 23 C -0.08 -1.16 2.24 -12.13 -0.03 -1.19 16 24 H 0.04 0.73 8.00 -2.39 -0.02 0.71 16 25 C -0.12 -1.36 6.05 31.94 0.19 -1.16 16 26 C -0.13 -1.30 6.94 32.13 0.22 -1.08 16 27 C -0.11 -1.08 6.32 31.95 0.20 -0.88 16 28 C -0.08 -1.04 1.99 -11.53 -0.02 -1.07 16 29 H 0.06 0.81 7.54 -2.38 -0.02 0.79 16 30 C -0.11 -1.27 5.08 29.92 0.15 -1.12 16 31 H 0.03 1.21 6.86 -2.39 -0.02 1.19 16 32 H 0.06 3.28 6.07 -2.39 -0.01 3.26 16 33 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.06 3.28 6.07 -2.39 -0.01 3.27 16 36 H 0.03 1.20 6.86 -2.39 -0.02 1.19 16 37 H 0.26 13.51 8.31 -92.70 -0.77 12.74 16 38 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 39 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 40 H 0.41 15.00 5.63 -92.71 -0.52 14.47 16 41 H 0.41 9.07 6.52 -92.71 -0.60 8.46 16 42 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.10 1.13 8.10 -2.39 -0.02 1.11 16 44 H 0.03 0.69 8.11 -2.39 -0.02 0.67 16 45 H 0.07 0.98 7.31 -2.39 -0.02 0.96 16 46 H 0.07 0.75 7.82 -2.39 -0.02 0.73 16 47 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 48 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 49 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 50 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 51 H 0.08 0.60 7.61 -2.39 -0.02 0.58 16 52 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 53 H 0.10 0.82 7.53 -2.38 -0.02 0.80 16 Total: -1.00 -59.17 399.65 2.33 -56.84 By element: Atomic # 1 Polarization: 31.85 SS G_CDS: -0.22 Total: 31.63 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: 4.71 Total: -0.03 kcal Atomic # 7 Polarization: -89.33 SS G_CDS: -4.08 Total: -93.40 kcal Atomic # 8 Polarization: -39.43 SS G_CDS: -0.11 Total: -39.54 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.49 kcal Total: -59.17 2.33 -56.84 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422363692.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.332 kcal (2) G-P(sol) polarization free energy of solvation -59.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds