Wall clock time and date at job start Tue Mar 31 2020 20:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.52992 * 109.47482 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.47563 * 305.00337 * 4 3 2 6 6 C 1.52997 * 109.47448 * 184.99813 * 4 3 2 7 7 N 1.46502 * 109.47005 * 64.99872 * 4 3 2 8 8 C 1.46762 * 124.35079 * 239.72697 * 7 4 3 9 9 C 1.54660 * 105.38183 * 162.85564 * 8 7 4 10 10 H 1.09002 * 111.19180 * 267.59348 * 9 8 7 11 11 C 1.50699 * 110.82398 * 143.77745 * 9 8 7 12 12 O 1.21282 * 119.99736 * 6.34713 * 11 9 8 13 13 N 1.34776 * 120.00575 * 186.34569 * 11 9 8 14 14 C 1.46924 * 120.62537 * 359.72416 * 13 11 9 15 15 C 1.52763 * 109.00791 * 233.58173 * 14 13 11 16 16 C 1.53035 * 109.38099 * 305.58580 * 15 14 13 17 17 C 1.50704 * 109.46125 * 181.25776 * 16 15 14 18 18 H 1.08003 * 120.00227 * 239.93256 * 17 16 15 19 19 C 1.37880 * 119.99862 * 59.93554 * 17 16 15 20 20 N 1.31519 * 119.99572 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00038 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.46777 * 89.99966 * 21 19 17 23 23 H 1.48507 * 109.46706 * 209.99986 * 21 19 17 24 24 H 1.48493 * 109.47072 * 329.99822 * 21 19 17 25 25 C 1.53041 * 109.54004 * 61.24120 * 16 15 14 26 26 C 1.46924 * 120.63508 * 179.97438 * 13 11 9 27 27 C 1.54632 * 101.68578 * 25.76668 * 9 8 7 28 28 C 1.34420 * 124.34981 * 60.03143 * 7 4 3 29 29 O 1.21281 * 124.94099 * 0.42098 * 28 7 4 30 30 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 31 31 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 33 33 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 34 34 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 35 35 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 36 36 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 37 37 H 1.09000 * 109.47346 * 300.00002 * 6 4 3 38 38 H 1.09007 * 109.46964 * 60.00529 * 6 4 3 39 39 H 1.09004 * 109.47224 * 180.02562 * 6 4 3 40 40 H 1.09007 * 110.24605 * 281.98421 * 8 7 4 41 41 H 1.09000 * 110.24915 * 43.98357 * 8 7 4 42 42 H 1.09001 * 109.58993 * 353.41859 * 14 13 11 43 43 H 1.09001 * 109.59220 * 113.84339 * 14 13 11 44 44 H 1.08997 * 109.56392 * 185.55517 * 15 14 13 45 45 H 1.08997 * 109.38471 * 65.51437 * 15 14 13 46 46 H 1.08999 * 109.45347 * 301.23082 * 16 15 14 47 47 H 0.96997 * 119.99512 * 180.02562 * 20 19 17 48 48 H 1.08997 * 109.50142 * 178.68164 * 25 16 15 49 49 H 1.09003 * 109.52556 * 58.59776 * 25 16 15 50 50 H 1.09001 * 109.58815 * 246.15830 * 26 13 11 51 51 H 1.09001 * 109.58169 * 6.58832 * 26 13 11 52 52 H 1.08991 * 110.48580 * 216.31024 * 27 9 8 53 53 H 1.08998 * 110.48446 * 93.67100 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9337 0.8530 0.8409 6 6 4.0799 2.8796 0.1250 7 7 4.0577 0.8590 -1.2528 8 6 4.9097 -0.3332 -1.3341 9 6 4.7993 -0.8171 -2.7989 10 1 4.0057 -1.5559 -2.9111 11 6 6.1167 -1.3663 -3.2824 12 8 7.0433 -1.4882 -2.5094 13 7 6.2654 -1.7220 -4.5738 14 6 5.1504 -1.5859 -5.5209 15 6 4.9183 -2.9281 -6.2124 16 6 6.2268 -3.4059 -6.8461 17 6 5.9926 -4.7149 -7.5553 18 1 6.5421 -5.5959 -7.2580 19 6 5.0770 -4.7877 -8.5836 20 7 4.4084 -3.7146 -8.9458 21 14 4.7862 -6.4103 -9.4621 22 1 3.7020 -7.1575 -8.7756 23 1 4.3920 -6.1474 -10.8696 24 1 6.0335 -7.2158 -9.4397 25 6 7.2831 -3.5987 -5.7557 26 6 7.5439 -2.2584 -5.0602 27 6 4.4425 0.4945 -3.5360 28 6 3.7873 1.3502 -2.4744 29 8 3.1159 2.3361 -2.6937 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.6766 1.9563 -0.8900 36 1 1.6767 1.9564 0.8899 37 1 3.7162 3.4691 -0.7165 38 1 3.7170 3.3137 1.0567 39 1 5.1700 2.8796 0.1241 40 1 5.9419 -0.0762 -1.0956 41 1 4.5456 -1.1041 -0.6549 42 1 4.2485 -1.2924 -4.9837 43 1 5.3953 -0.8307 -6.2678 44 1 4.1598 -2.8134 -6.9867 45 1 4.5811 -3.6598 -5.4783 46 1 6.5760 -2.6622 -7.5624 47 1 3.7640 -3.7659 -9.6690 48 1 8.2077 -3.9614 -6.2048 49 1 6.9245 -4.3240 -5.0253 50 1 7.9877 -1.5591 -5.7688 51 1 8.2207 -2.4086 -4.2191 52 1 3.7457 0.2970 -4.3505 53 1 5.3440 0.9777 -3.9128 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000541053606.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:50 Heat of formation + Delta-G solvation = -103.766586 kcal Electronic energy + Delta-G solvation = -30723.852443 eV Core-core repulsion = 26786.846579 eV Total energy + Delta-G solvation = -3937.005864 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.12570 -40.73373 -38.49266 -37.60069 -36.68401 -35.34223 -33.95369 -32.96880 -31.82931 -30.74192 -28.80072 -28.00405 -27.58455 -25.34348 -24.18147 -23.44577 -23.35333 -22.28899 -21.22480 -19.97519 -19.76856 -18.66545 -18.12323 -17.75399 -17.20396 -16.85878 -16.48572 -16.16990 -15.94132 -15.71482 -15.05736 -14.89670 -14.85174 -14.78159 -14.65186 -14.52223 -14.28900 -14.20182 -13.83492 -13.65747 -13.54500 -13.24077 -13.04469 -12.99733 -12.85526 -12.77934 -12.65477 -12.46615 -12.42300 -12.32864 -12.11537 -11.89649 -11.87027 -11.61817 -11.55639 -11.43178 -11.01751 -10.98378 -10.81948 -10.50577 -10.35689 -9.68236 -9.53697 -8.06421 -6.18955 1.41761 1.44688 1.51897 1.52727 1.57329 1.86773 2.13618 2.45205 3.13705 3.20656 3.31465 3.59304 3.74620 3.87680 3.99494 4.05213 4.12703 4.21394 4.30308 4.34087 4.39911 4.42051 4.50864 4.54207 4.56649 4.60168 4.62199 4.66991 4.75310 4.80277 4.83511 4.88641 4.93201 4.94836 5.00488 5.02086 5.03754 5.22359 5.24781 5.27791 5.28121 5.32856 5.45225 5.46381 5.56173 5.67125 5.70885 6.02054 6.11586 6.17464 6.41638 6.50213 6.90924 7.11336 7.16328 7.48808 8.96643 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.015778 B = 0.002738 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.191803 B =10222.181026 C =11053.102734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C -0.130 4.130 4 C 0.150 3.850 5 H 0.114 0.886 6 C -0.164 4.164 7 N -0.606 5.606 8 C 0.125 3.875 9 C -0.114 4.114 10 H 0.135 0.865 11 C 0.526 3.474 12 O -0.576 6.576 13 N -0.598 5.598 14 C 0.111 3.889 15 C -0.117 4.117 16 C 0.045 3.955 17 C -0.533 4.533 18 H 0.046 0.954 19 C 0.019 3.981 20 N -0.910 5.910 21 Si 0.945 3.055 22 H -0.277 1.277 23 H -0.285 1.285 24 H -0.274 1.274 25 C -0.114 4.114 26 C 0.117 3.883 27 C -0.145 4.145 28 C 0.519 3.481 29 O -0.563 6.563 30 H 0.040 0.960 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.049 0.951 35 H 0.050 0.950 36 H 0.088 0.912 37 H 0.044 0.956 38 H 0.087 0.913 39 H 0.055 0.945 40 H 0.081 0.919 41 H 0.105 0.895 42 H 0.102 0.898 43 H 0.067 0.933 44 H 0.078 0.922 45 H 0.031 0.969 46 H 0.002 0.998 47 H 0.261 0.739 48 H 0.061 0.939 49 H 0.044 0.956 50 H 0.069 0.931 51 H 0.084 0.916 52 H 0.121 0.879 53 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.628 9.225 18.828 21.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.169 4.169 4 C 0.049 3.951 5 H 0.131 0.869 6 C -0.222 4.222 7 N -0.339 5.339 8 C 0.002 3.998 9 C -0.135 4.135 10 H 0.153 0.847 11 C 0.315 3.685 12 O -0.457 6.457 13 N -0.329 5.329 14 C -0.011 4.011 15 C -0.156 4.156 16 C 0.026 3.974 17 C -0.571 4.571 18 H 0.065 0.935 19 C -0.180 4.180 20 N -0.550 5.550 21 Si 0.772 3.228 22 H -0.203 1.203 23 H -0.211 1.211 24 H -0.198 1.198 25 C -0.152 4.152 26 C -0.005 4.005 27 C -0.185 4.185 28 C 0.307 3.693 29 O -0.443 6.443 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.107 0.893 37 H 0.063 0.937 38 H 0.106 0.894 39 H 0.075 0.925 40 H 0.100 0.900 41 H 0.124 0.876 42 H 0.120 0.880 43 H 0.086 0.914 44 H 0.097 0.903 45 H 0.050 0.950 46 H 0.020 0.980 47 H 0.070 0.930 48 H 0.080 0.920 49 H 0.063 0.937 50 H 0.088 0.912 51 H 0.102 0.898 52 H 0.139 0.861 53 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -3.641 9.755 19.059 21.718 hybrid contribution -0.128 -1.022 -1.237 1.609 sum -3.769 8.733 17.822 20.201 Atomic orbital electron populations 1.21751 0.95744 1.01795 1.01585 1.21480 0.96032 0.96147 1.02058 1.21983 0.94146 0.97835 1.02887 1.21235 0.94142 0.94801 0.84950 0.86854 1.22138 1.01195 0.95948 1.02879 1.48510 1.50120 1.29044 1.06236 1.22018 0.95732 0.87100 0.94915 1.22202 0.96354 0.98374 0.96570 0.84721 1.20425 0.89579 0.77240 0.81279 1.90651 1.43207 1.56988 1.54835 1.48209 1.13986 1.61758 1.08933 1.21977 0.88815 0.98509 0.91784 1.21728 1.01183 0.94243 0.98450 1.18611 0.91932 0.94836 0.91993 1.21551 1.22198 0.96479 1.16897 0.93542 1.25596 0.95860 0.99009 0.97557 1.69939 1.26443 1.29126 1.29481 0.85759 0.78313 0.80873 0.77896 1.20316 1.21063 1.19837 1.21857 0.99762 0.95706 0.97850 1.21609 0.85150 0.95101 0.98627 1.22509 1.03500 0.94072 0.98415 1.20897 0.79282 0.84067 0.85037 1.90678 1.41286 1.27874 1.84435 0.94043 0.92388 0.91899 0.90608 0.93211 0.93094 0.89326 0.93686 0.89412 0.92542 0.90038 0.87643 0.88018 0.91448 0.90323 0.94986 0.97952 0.92995 0.92026 0.93712 0.91246 0.89753 0.86063 0.87506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 9.91 71.98 0.71 -1.51 16 2 C -0.12 -1.77 5.82 30.59 0.18 -1.59 16 3 C -0.13 -2.10 4.64 30.59 0.14 -1.96 16 4 C 0.15 2.36 2.86 44.99 0.13 2.49 16 5 H 0.11 1.25 8.07 -2.39 -0.02 1.23 16 6 C -0.16 -2.71 9.20 71.98 0.66 -2.05 16 7 N -0.61 -11.61 2.28 -793.69 -1.81 -13.42 16 8 C 0.13 2.25 6.61 86.89 0.57 2.82 16 9 C -0.11 -2.33 2.58 -10.42 -0.03 -2.36 16 10 H 0.14 2.39 7.82 -2.39 -0.02 2.38 16 11 C 0.53 14.68 7.01 87.66 0.61 15.30 16 12 O -0.58 -19.00 14.98 -3.04 -0.05 -19.05 16 13 N -0.60 -18.20 2.98 -819.65 -2.44 -20.64 16 14 C 0.11 3.42 5.62 86.22 0.48 3.90 16 15 C -0.12 -4.82 5.14 30.53 0.16 -4.66 16 16 C 0.04 2.05 2.06 -11.51 -0.02 2.02 16 17 C -0.53 -27.81 8.56 25.60 0.22 -27.59 16 18 H 0.05 2.43 7.74 -2.91 -0.02 2.41 16 19 C 0.02 0.99 5.30 84.65 0.45 1.44 16 20 N -0.91 -49.04 11.31 21.45 0.24 -48.80 16 21 Si 0.94 41.96 29.54 68.60 2.03 43.99 16 22 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 23 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 24 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 25 C -0.11 -4.36 5.30 30.69 0.16 -4.19 16 26 C 0.12 3.84 6.44 86.38 0.56 4.39 16 27 C -0.14 -3.06 5.16 30.59 0.16 -2.90 16 28 C 0.52 12.61 7.39 87.90 0.65 13.26 16 29 O -0.56 -17.58 15.07 -3.03 -0.05 -17.63 16 30 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.06 0.79 8.14 -2.39 -0.02 0.78 16 32 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.08 0.88 8.14 -2.39 -0.02 0.87 16 34 H 0.05 0.86 7.75 -2.39 -0.02 0.84 16 35 H 0.05 1.15 6.65 -2.39 -0.02 1.14 16 36 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.04 1.01 6.77 -2.39 -0.02 0.99 16 38 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 39 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 40 H 0.08 1.67 7.07 -2.38 -0.02 1.66 16 41 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.10 2.50 4.39 -2.39 -0.01 2.49 16 43 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 44 H 0.08 3.70 6.03 -2.39 -0.01 3.68 16 45 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 47 H 0.26 13.49 8.31 -92.71 -0.77 12.72 16 48 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 49 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 50 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 51 H 0.08 2.71 7.00 -2.39 -0.02 2.69 16 52 H 0.12 2.39 6.68 -2.39 -0.02 2.38 16 53 H 0.11 2.32 7.89 -2.39 -0.02 2.30 16 Total: -1.00 -63.62 403.25 4.60 -59.02 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: 0.87 Total: 19.71 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: 5.80 Total: -3.19 kcal Atomic # 7 Polarization: -78.85 SS G_CDS: -4.01 Total: -82.86 kcal Atomic # 8 Polarization: -36.58 SS G_CDS: -0.09 Total: -36.68 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal Total: -63.62 4.60 -59.02 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541053606.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.745 kcal (2) G-P(sol) polarization free energy of solvation -63.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds