Wall clock time and date at job start Tue Mar 31 2020 20:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47222 * 2 1 4 4 C 1.52998 * 109.47217 * 120.00060 * 2 1 3 5 5 O 1.42902 * 109.47226 * 64.99942 * 4 2 1 6 6 C 1.35894 * 117.00187 * 179.97438 * 5 4 2 7 7 C 1.38813 * 120.01768 * 359.72781 * 6 5 4 8 8 C 1.38178 * 120.08722 * 179.71881 * 7 6 5 9 9 C 1.38155 * 120.13010 * 0.55324 * 8 7 6 10 10 C 1.38923 * 120.03525 * 359.72274 * 9 8 7 11 11 N 1.39671 * 120.04602 * 179.97438 * 10 9 8 12 12 C 1.46504 * 120.00104 * 0.02562 * 11 10 9 13 13 C 1.52994 * 109.47521 * 180.02562 * 12 11 10 14 14 H 1.09001 * 109.47329 * 59.99453 * 13 12 11 15 15 O 1.42909 * 109.46874 * 300.00122 * 13 12 11 16 16 C 1.53000 * 109.47362 * 180.02562 * 13 12 11 17 17 N 1.46900 * 109.47069 * 180.46175 * 16 13 12 18 18 C 1.46900 * 110.99840 * 199.84958 * 17 16 13 19 19 C 1.46897 * 111.00050 * 75.89489 * 17 16 13 20 20 C 1.50699 * 109.46947 * 190.00090 * 19 17 16 21 21 H 1.07993 * 120.00359 * 359.97438 * 20 19 17 22 22 C 1.37880 * 119.99891 * 180.02562 * 20 19 17 23 23 N 1.31511 * 120.00080 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 120.00110 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47192 * 89.99817 * 24 22 20 26 26 H 1.48498 * 109.47474 * 209.99906 * 24 22 20 27 27 H 1.48505 * 109.46795 * 329.99791 * 24 22 20 28 28 C 1.38580 * 120.01681 * 179.97438 * 6 5 4 29 29 H 1.09006 * 109.47566 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47091 * 299.99778 * 1 2 3 31 31 H 1.09004 * 109.47561 * 59.99432 * 1 2 3 32 32 H 1.09001 * 109.47091 * 240.00222 * 2 1 3 33 33 H 1.08999 * 109.46500 * 180.02562 * 3 2 1 34 34 H 1.08997 * 109.46969 * 299.99910 * 3 2 1 35 35 H 1.09001 * 109.46906 * 60.00109 * 3 2 1 36 36 H 1.08999 * 109.47098 * 184.99790 * 4 2 1 37 37 H 1.08995 * 109.47255 * 304.99747 * 4 2 1 38 38 H 1.07990 * 119.95298 * 359.97438 * 7 6 5 39 39 H 1.08004 * 119.93140 * 180.25090 * 8 7 6 40 40 H 1.08002 * 119.97850 * 179.69844 * 9 8 7 41 41 H 0.96996 * 120.00432 * 180.02562 * 11 10 9 42 42 H 1.09005 * 109.46777 * 300.00785 * 12 11 10 43 43 H 1.09000 * 109.46790 * 59.99676 * 12 11 10 44 44 H 0.96702 * 113.99716 * 299.99987 * 15 13 12 45 45 H 1.09003 * 109.46490 * 300.46010 * 16 13 12 46 46 H 1.08993 * 109.46957 * 60.46077 * 16 13 12 47 47 H 1.08998 * 109.47190 * 64.82044 * 18 17 16 48 48 H 1.09004 * 109.47195 * 184.82052 * 18 17 16 49 49 H 1.08998 * 109.47133 * 304.81658 * 18 17 16 50 50 H 1.09005 * 109.47387 * 309.99831 * 19 17 16 51 51 H 1.09001 * 109.47335 * 70.00145 * 19 17 16 52 52 H 0.97002 * 120.00147 * 180.02562 * 23 22 20 53 53 H 1.08001 * 120.06400 * 359.97438 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 8 1.6619 -2.0982 1.1920 6 6 2.0405 -2.8857 2.2328 7 6 2.7664 -2.3445 3.2850 8 6 3.1471 -3.1426 4.3467 9 6 2.8167 -4.4840 4.3594 10 6 2.0953 -5.0324 3.3063 11 7 1.7616 -6.3886 3.3186 12 6 2.1718 -7.2338 4.4428 13 6 1.6841 -8.6650 4.2095 14 1 2.1183 -9.0511 3.2873 15 8 0.2589 -8.6713 4.1040 16 6 2.1119 -9.5475 5.3838 17 7 1.6531 -10.9240 5.1545 18 6 1.6141 -11.6823 6.4121 19 6 2.4943 -11.6002 4.1580 20 6 1.8573 -12.9090 3.7679 21 1 0.9214 -13.2087 4.2157 22 6 2.4698 -13.7243 2.8399 23 7 3.6098 -13.3596 2.2949 24 14 1.6805 -15.3470 2.3567 25 1 0.7734 -15.1315 1.2009 26 1 2.7381 -16.3196 1.9814 27 1 0.9026 -15.8800 3.5040 28 6 1.7066 -4.2306 2.2417 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 3.1263 -0.6444 1.2951 37 1 1.6054 -0.2618 2.1369 38 1 3.0303 -1.2974 3.2757 39 1 3.7083 -2.7180 5.1660 40 1 3.1197 -5.1067 5.1882 41 1 1.2583 -6.7710 2.5829 42 1 3.2589 -7.2292 4.5230 43 1 1.7379 -6.8474 5.3651 44 1 -0.1952 -8.3397 4.8908 45 1 3.1985 -9.5362 5.4697 46 1 1.6707 -9.1661 6.3046 47 1 0.8669 -11.2471 7.0757 48 1 1.3540 -12.7199 6.2028 49 1 2.5925 -11.6425 6.8909 50 1 2.5932 -10.9671 3.2762 51 1 3.4805 -11.7884 4.5825 52 1 4.0405 -13.9330 1.6417 53 1 1.1450 -4.6541 1.4222 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000579344620.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:17 Heat of formation + Delta-G solvation = -93.060747 kcal Electronic energy + Delta-G solvation = -28299.254213 eV Core-core repulsion = 24362.712589 eV Total energy + Delta-G solvation = -3936.541624 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.13179 -39.81618 -38.88060 -37.27552 -36.31314 -35.34376 -34.61496 -32.06130 -30.99939 -29.68323 -29.14902 -28.05222 -27.65597 -26.83553 -25.36107 -23.90984 -23.09953 -22.09282 -21.74177 -21.04797 -19.15398 -18.61888 -17.89238 -17.29441 -17.11866 -16.88257 -16.76452 -16.55624 -16.49784 -15.96029 -15.58666 -15.27942 -15.16180 -15.07694 -14.49051 -14.48002 -14.44593 -14.09345 -13.96490 -13.83409 -13.54542 -13.22633 -13.11401 -12.98351 -12.91278 -12.59236 -12.57904 -12.52376 -12.30519 -12.25974 -12.16695 -12.07232 -11.99558 -11.59730 -11.55065 -11.48157 -11.34024 -10.90918 -10.84318 -10.61670 -9.24934 -8.95263 -8.36983 -8.21461 -6.30677 0.56120 0.69463 1.39499 1.41459 1.52030 2.07955 2.39397 2.58287 2.95403 3.11114 3.26355 3.61792 3.80420 3.86925 3.88091 4.01697 4.04762 4.13226 4.25660 4.25720 4.36358 4.36866 4.43712 4.49681 4.55716 4.57861 4.59317 4.66560 4.70864 4.71710 4.78950 4.79434 4.96550 4.99829 5.01716 5.07502 5.10778 5.19963 5.21811 5.29975 5.33096 5.36451 5.39995 5.45072 5.62716 5.64201 5.71499 6.06000 6.33626 6.36644 6.55108 6.64305 6.74050 6.85527 6.99990 7.38772 8.89470 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.017727 B = 0.001746 C = 0.001658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.126010 B =16031.181218 C =16882.657759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 C -0.141 4.141 4 C 0.059 3.941 5 O -0.332 6.332 6 C 0.163 3.837 7 C -0.274 4.274 8 C -0.033 4.033 9 C -0.245 4.245 10 C 0.247 3.753 11 N -0.738 5.738 12 C 0.108 3.892 13 C 0.115 3.885 14 H 0.067 0.933 15 O -0.557 6.557 16 C 0.028 3.972 17 N -0.542 5.542 18 C 0.039 3.961 19 C 0.209 3.791 20 C -0.523 4.523 21 H 0.061 0.939 22 C 0.000 4.000 23 N -0.935 5.935 24 Si 0.968 3.032 25 H -0.276 1.276 26 H -0.281 1.281 27 H -0.263 1.263 28 C -0.256 4.256 29 H 0.043 0.957 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.141 0.859 39 H 0.150 0.850 40 H 0.133 0.867 41 H 0.402 0.598 42 H 0.070 0.930 43 H 0.087 0.913 44 H 0.383 0.617 45 H 0.033 0.967 46 H 0.102 0.898 47 H 0.082 0.918 48 H 0.053 0.947 49 H 0.013 0.987 50 H 0.003 0.997 51 H -0.040 1.040 52 H 0.264 0.736 53 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.509 29.747 3.783 30.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.114 4.114 3 C -0.199 4.199 4 C -0.015 4.015 5 O -0.246 6.246 6 C 0.117 3.883 7 C -0.294 4.294 8 C -0.051 4.051 9 C -0.268 4.268 10 C 0.142 3.858 11 N -0.366 5.366 12 C -0.017 4.017 13 C 0.055 3.945 14 H 0.085 0.915 15 O -0.363 6.363 16 C -0.101 4.101 17 N -0.265 5.265 18 C -0.109 4.109 19 C 0.082 3.918 20 C -0.561 4.561 21 H 0.079 0.921 22 C -0.198 4.198 23 N -0.575 5.575 24 Si 0.792 3.208 25 H -0.202 1.202 26 H -0.207 1.207 27 H -0.187 1.187 28 C -0.280 4.280 29 H 0.062 0.938 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.159 0.841 39 H 0.167 0.833 40 H 0.151 0.849 41 H 0.237 0.763 42 H 0.088 0.912 43 H 0.105 0.895 44 H 0.231 0.769 45 H 0.051 0.949 46 H 0.120 0.880 47 H 0.101 0.899 48 H 0.072 0.928 49 H 0.032 0.968 50 H 0.021 0.979 51 H -0.022 1.022 52 H 0.072 0.928 53 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -2.769 29.298 2.903 29.571 hybrid contribution 0.641 -1.103 -0.033 1.276 sum -2.128 28.195 2.870 28.420 Atomic orbital electron populations 1.21811 0.94553 1.01559 1.02447 1.21167 0.96843 0.96804 0.96599 1.21759 1.01556 0.93345 1.03198 1.23114 1.00156 0.78243 1.00003 1.86013 1.74458 1.22223 1.41872 1.18738 0.92696 0.89878 0.86979 1.21188 1.09282 1.01830 0.97107 1.20986 0.94904 0.92313 0.96947 1.20793 1.08424 0.96953 1.00584 1.17620 0.91520 0.83797 0.92907 1.44658 1.61469 1.05554 1.24873 1.21951 1.00180 0.89435 0.90165 1.21847 0.81949 0.92279 0.98475 0.91477 1.86638 1.17372 1.88333 1.43911 1.22718 0.98281 0.90165 0.98953 1.61912 1.53131 1.01690 1.09814 1.22246 0.99247 0.99052 0.90379 1.19382 0.89225 0.93218 0.89942 1.21495 1.07309 1.03955 1.23387 0.92053 1.25906 0.95451 1.02293 0.96110 1.70078 1.18313 1.39437 1.29695 0.85405 0.78015 0.78573 0.78763 1.20160 1.20690 1.18711 1.19764 1.13751 0.92368 1.02078 0.93776 0.92179 0.91514 0.90965 0.91788 0.91027 0.91614 0.91231 0.91110 0.84125 0.83253 0.84919 0.76340 0.91169 0.89543 0.76894 0.94896 0.87975 0.89911 0.92818 0.96796 0.97861 1.02222 0.92766 0.86462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.09 71.98 0.65 -1.28 16 2 C -0.10 -1.20 3.16 -10.79 -0.03 -1.24 16 3 C -0.14 -1.12 9.19 71.98 0.66 -0.46 16 4 C 0.06 0.90 4.12 71.98 0.30 1.19 16 5 O -0.33 -7.56 9.67 -92.35 -0.89 -8.45 16 6 C 0.16 3.94 6.68 22.49 0.15 4.09 16 7 C -0.27 -5.41 9.04 22.39 0.20 -5.21 16 8 C -0.03 -0.61 10.03 22.24 0.22 -0.39 16 9 C -0.24 -5.30 9.31 22.41 0.21 -5.09 16 10 C 0.25 6.21 6.65 38.20 0.25 6.46 16 11 N -0.74 -18.52 5.62 -339.47 -1.91 -20.43 16 12 C 0.11 2.48 4.57 86.38 0.40 2.87 16 13 C 0.11 3.48 3.12 30.59 0.10 3.57 16 14 H 0.07 2.60 6.78 -2.39 -0.02 2.59 16 15 O -0.56 -17.16 12.96 -148.98 -1.93 -19.09 16 16 C 0.03 0.88 4.66 86.30 0.40 1.28 16 17 N -0.54 -22.64 4.56 -927.06 -4.22 -26.86 16 18 C 0.04 1.43 9.37 127.69 1.20 2.63 16 19 C 0.21 11.14 4.55 85.56 0.39 11.53 16 20 C -0.52 -30.17 8.39 25.60 0.21 -29.95 16 21 H 0.06 3.49 7.16 -2.91 -0.02 3.47 16 22 C 0.00 0.01 5.46 84.66 0.46 0.47 16 23 N -0.93 -57.05 13.29 21.45 0.28 -56.77 16 24 Si 0.97 45.13 29.54 68.60 2.03 47.16 16 25 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 26 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 27 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 28 C -0.26 -6.76 9.83 22.49 0.22 -6.53 16 29 H 0.04 0.75 7.82 -2.38 -0.02 0.73 16 30 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.06 0.44 8.14 -2.39 -0.02 0.43 16 34 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.06 0.43 8.14 -2.39 -0.02 0.42 16 36 H 0.07 0.92 7.65 -2.39 -0.02 0.90 16 37 H 0.07 0.92 7.67 -2.39 -0.02 0.90 16 38 H 0.14 2.08 6.29 -2.92 -0.02 2.06 16 39 H 0.15 1.86 8.06 -2.91 -0.02 1.83 16 40 H 0.13 2.47 6.73 -2.91 -0.02 2.45 16 41 H 0.40 10.80 8.36 -92.71 -0.77 10.02 16 42 H 0.07 1.60 7.95 -2.38 -0.02 1.58 16 43 H 0.09 1.58 7.95 -2.39 -0.02 1.56 16 44 H 0.38 8.46 9.04 -74.06 -0.67 7.79 16 45 H 0.03 1.07 8.00 -2.39 -0.02 1.05 16 46 H 0.10 2.44 7.94 -2.39 -0.02 2.42 16 47 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 48 H 0.05 2.21 6.67 -2.38 -0.02 2.20 16 49 H 0.01 0.48 8.13 -2.39 -0.02 0.46 16 50 H 0.00 0.19 6.63 -2.38 -0.02 0.18 16 51 H -0.04 -2.30 8.12 -2.39 -0.02 -2.32 16 52 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 53 H 0.12 3.16 8.06 -2.91 -0.02 3.13 16 Total: -1.00 -70.76 424.47 -1.21 -71.96 By element: Atomic # 1 Polarization: 29.08 SS G_CDS: -0.55 Total: 28.52 kcal Atomic # 6 Polarization: -22.03 SS G_CDS: 5.99 Total: -16.04 kcal Atomic # 7 Polarization: -98.21 SS G_CDS: -5.85 Total: -104.06 kcal Atomic # 8 Polarization: -24.72 SS G_CDS: -2.82 Total: -27.55 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -70.76 -1.21 -71.96 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579344620.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.098 kcal (2) G-P(sol) polarization free energy of solvation -70.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds