Wall clock time and date at job start Tue Mar 31 2020 20:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53007 * 109.46991 * 2 1 4 4 C 1.50697 * 109.47387 * 240.00339 * 2 1 3 5 5 H 1.07999 * 120.00398 * 237.00863 * 4 2 1 6 6 C 1.37877 * 120.00184 * 56.99863 * 4 2 1 7 7 N 1.31516 * 120.00020 * 5.54786 * 6 4 2 8 8 Si 1.86803 * 120.00430 * 185.54352 * 6 4 2 9 9 H 1.48498 * 109.46805 * 85.00143 * 8 6 4 10 10 H 1.48490 * 109.47325 * 205.00246 * 8 6 4 11 11 H 1.48503 * 109.46882 * 325.00636 * 8 6 4 12 12 C 1.52995 * 109.47420 * 119.99695 * 2 1 3 13 13 N 1.46493 * 109.47531 * 300.00523 * 12 2 1 14 14 C 1.34776 * 120.00002 * 179.72545 * 13 12 2 15 15 O 1.21272 * 120.00325 * 0.26882 * 14 13 12 16 16 C 1.50705 * 119.99753 * 180.27732 * 14 13 12 17 17 H 1.09003 * 110.85464 * 297.65597 * 16 14 13 18 18 C 1.54622 * 110.97377 * 61.44914 * 16 14 13 19 19 C 1.51285 * 104.19779 * 142.91723 * 18 16 14 20 20 O 1.21276 * 124.94179 * 163.78238 * 19 18 16 21 21 N 1.34419 * 110.11136 * 343.74878 * 19 18 16 22 22 C 1.46495 * 124.34817 * 179.57182 * 21 19 18 23 23 C 1.53000 * 109.47445 * 59.97345 * 22 21 19 24 24 C 1.52994 * 109.47745 * 180.02562 * 23 22 21 25 25 C 1.53009 * 109.47047 * 60.00050 * 24 23 22 26 26 C 1.52998 * 109.46941 * 300.00163 * 25 24 23 27 27 C 1.53004 * 109.47343 * 60.00100 * 26 25 24 28 28 C 1.46757 * 111.30409 * 359.59364 * 21 19 18 29 29 H 1.08998 * 109.47288 * 293.93110 * 1 2 3 30 30 H 1.08992 * 109.47849 * 53.93643 * 1 2 3 31 31 H 1.09003 * 109.47211 * 173.93432 * 1 2 3 32 32 H 1.08996 * 109.47401 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.46640 * 300.00511 * 3 2 1 34 34 H 1.08998 * 109.46853 * 59.99623 * 3 2 1 35 35 H 0.97001 * 120.00368 * 179.97438 * 7 6 4 36 36 H 1.09007 * 109.47031 * 179.97438 * 12 2 1 37 37 H 1.09001 * 109.46883 * 60.00879 * 12 2 1 38 38 H 0.97002 * 119.99884 * 359.97438 * 13 12 2 39 39 H 1.09004 * 110.48991 * 261.59907 * 18 16 14 40 40 H 1.08997 * 110.48570 * 24.10452 * 18 16 14 41 41 H 1.08997 * 109.47926 * 179.97438 * 22 21 19 42 42 H 1.09003 * 109.46962 * 300.00127 * 23 22 21 43 43 H 1.08997 * 109.46854 * 60.00007 * 23 22 21 44 44 H 1.09000 * 109.46882 * 300.00519 * 24 23 22 45 45 H 1.08997 * 109.47852 * 179.97438 * 24 23 22 46 46 H 1.08997 * 109.46978 * 180.02562 * 25 24 23 47 47 H 1.08992 * 109.46920 * 60.00157 * 25 24 23 48 48 H 1.09003 * 109.47189 * 300.00228 * 26 25 24 49 49 H 1.08997 * 109.46988 * 180.02562 * 26 25 24 50 50 H 1.08995 * 109.47304 * 180.02562 * 27 26 25 51 51 H 1.09000 * 109.46949 * 59.99408 * 27 26 25 52 52 H 1.09005 * 110.24902 * 258.01478 * 28 21 19 53 53 H 1.09003 * 110.24734 * 136.01684 * 28 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6925 -1.5594 -1.1322 6 6 1.6490 -0.2764 -2.4818 7 7 0.9349 0.8209 -2.6071 8 14 2.1441 -1.2469 -3.9992 9 1 1.1619 -2.3360 -4.2323 10 1 2.1706 -0.3438 -5.1776 11 1 3.4932 -1.8326 -3.7938 12 6 2.0400 -0.7211 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8728 -0.4944 3.6694 15 8 2.5700 -1.4803 3.7807 16 6 1.3652 0.2124 4.8999 17 1 1.7489 1.2315 4.9481 18 6 -0.1802 0.2001 4.9474 19 6 -0.5050 0.0252 6.4146 20 8 -1.5877 0.2407 6.9168 21 7 0.5808 -0.4045 7.0803 22 6 0.6166 -0.6674 8.5210 23 6 -0.4061 -1.7514 8.8673 24 6 -0.3692 -2.0257 10.3720 25 6 -0.7090 -0.7423 11.1328 26 6 0.3138 0.3417 10.7866 27 6 0.2769 0.6159 9.2818 28 6 1.7259 -0.5759 6.1786 29 1 -0.3634 0.4168 0.9393 30 1 -0.3634 0.6049 -0.8306 31 1 -0.3634 -1.0219 -0.1086 32 1 3.1299 1.4427 -0.0005 33 1 1.6765 1.9563 -0.8899 34 1 1.6765 1.9564 0.8899 35 1 0.6656 1.1264 -3.4875 36 1 3.1301 -0.7215 1.2489 37 1 1.6768 -1.7489 1.2492 38 1 0.9942 0.7582 2.3564 39 1 -0.5808 1.1441 4.5778 40 1 -0.5731 -0.6337 4.3656 41 1 1.6136 -1.0049 8.8042 42 1 -1.4032 -1.4139 8.5842 43 1 -0.1644 -2.6655 8.3250 44 1 0.6278 -2.3629 10.6554 45 1 -1.0981 -2.7976 10.6187 46 1 -0.6822 -0.9376 12.2048 47 1 -1.7059 -0.4051 10.8493 48 1 1.3108 0.0043 11.0701 49 1 0.0721 1.2557 11.3289 50 1 1.0058 1.3878 9.0351 51 1 -0.7201 0.9531 8.9983 52 1 1.8668 -1.6310 5.9440 53 1 2.6282 -0.1660 6.6325 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000583916527.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:16 Heat of formation + Delta-G solvation = -114.106317 kcal Electronic energy + Delta-G solvation = -30059.439466 eV Core-core repulsion = 26121.985238 eV Total energy + Delta-G solvation = -3937.454228 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.03067 -40.56164 -38.83965 -38.18804 -37.12086 -35.02532 -33.84486 -32.59247 -31.70792 -29.97724 -28.75522 -27.53076 -27.45306 -26.81488 -24.16958 -23.67739 -23.54904 -21.37690 -20.89921 -20.54790 -20.00121 -18.71179 -17.88112 -17.76331 -16.97710 -16.68929 -16.46498 -16.21610 -16.06055 -15.65497 -15.21841 -14.98489 -14.93309 -14.82267 -14.73300 -14.58323 -14.30989 -13.99122 -13.90522 -13.45431 -13.30276 -13.20727 -13.12921 -13.04729 -12.70833 -12.65467 -12.58667 -12.41030 -12.29550 -12.20734 -12.12634 -12.00975 -11.59529 -11.44857 -11.28321 -11.24857 -11.19804 -10.95440 -10.69460 -10.56549 -10.37294 -9.91671 -9.67552 -8.01502 -6.15395 1.43066 1.46344 1.50784 1.52995 1.63948 1.87158 2.32033 2.50081 3.20554 3.22742 3.34374 3.71646 3.77950 3.81352 3.89724 4.02905 4.19715 4.23559 4.28045 4.36862 4.47528 4.49562 4.55650 4.56716 4.59592 4.62564 4.63096 4.75815 4.77833 4.91146 4.93843 5.01319 5.04666 5.09192 5.09401 5.13679 5.19255 5.23053 5.24644 5.28725 5.37138 5.39612 5.47529 5.61994 5.68093 5.70108 5.71070 6.09683 6.17567 6.25079 6.45342 6.66772 6.89199 7.12144 7.30446 7.51850 8.97585 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.031745 B = 0.002079 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.805388 B =13465.095855 C =13643.066422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.050 3.950 3 C -0.121 4.121 4 C -0.527 4.527 5 H 0.045 0.955 6 C 0.028 3.972 7 N -0.898 5.898 8 Si 0.941 3.059 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.276 1.276 12 C 0.148 3.852 13 N -0.706 5.706 14 C 0.520 3.480 15 O -0.582 6.582 16 C -0.109 4.109 17 H 0.149 0.851 18 C -0.144 4.144 19 C 0.517 3.483 20 O -0.564 6.564 21 N -0.611 5.611 22 C 0.156 3.844 23 C -0.133 4.133 24 C -0.110 4.110 25 C -0.122 4.122 26 C -0.110 4.110 27 C -0.128 4.128 28 C 0.120 3.880 29 H 0.041 0.959 30 H 0.057 0.943 31 H 0.016 0.984 32 H 0.019 0.981 33 H 0.059 0.941 34 H 0.040 0.960 35 H 0.259 0.741 36 H 0.042 0.958 37 H 0.039 0.961 38 H 0.410 0.590 39 H 0.130 0.870 40 H 0.102 0.898 41 H 0.110 0.890 42 H 0.049 0.951 43 H 0.057 0.943 44 H 0.079 0.921 45 H 0.066 0.934 46 H 0.078 0.922 47 H 0.047 0.953 48 H 0.079 0.921 49 H 0.070 0.930 50 H 0.069 0.931 51 H 0.050 0.950 52 H 0.075 0.925 53 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.205 1.366 25.445 25.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.049 3.951 3 C -0.178 4.178 4 C -0.566 4.566 5 H 0.063 0.937 6 C -0.172 4.172 7 N -0.536 5.536 8 Si 0.769 3.231 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.201 1.201 12 C 0.024 3.976 13 N -0.357 5.357 14 C 0.306 3.694 15 O -0.462 6.462 16 C -0.130 4.130 17 H 0.167 0.833 18 C -0.184 4.184 19 C 0.305 3.695 20 O -0.444 6.444 21 N -0.344 5.344 22 C 0.054 3.946 23 C -0.171 4.171 24 C -0.148 4.148 25 C -0.160 4.160 26 C -0.148 4.148 27 C -0.167 4.167 28 C -0.002 4.002 29 H 0.060 0.940 30 H 0.076 0.924 31 H 0.035 0.965 32 H 0.038 0.962 33 H 0.078 0.922 34 H 0.059 0.941 35 H 0.069 0.931 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.248 0.752 39 H 0.148 0.852 40 H 0.120 0.880 41 H 0.128 0.872 42 H 0.068 0.932 43 H 0.076 0.924 44 H 0.097 0.903 45 H 0.085 0.915 46 H 0.097 0.903 47 H 0.065 0.935 48 H 0.098 0.902 49 H 0.089 0.911 50 H 0.088 0.912 51 H 0.069 0.931 52 H 0.093 0.907 53 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -0.333 0.880 25.689 25.706 hybrid contribution -0.157 -0.360 -1.624 1.671 sum -0.490 0.519 24.065 24.076 Atomic orbital electron populations 1.21657 0.97152 0.99121 0.99825 1.18367 0.93155 0.93125 0.90446 1.21686 0.97993 0.97744 1.00425 1.21262 1.29356 1.14337 0.91614 0.93706 1.25440 0.95320 0.95572 1.00885 1.69927 1.38219 1.21938 1.23555 0.85831 0.78521 0.78822 0.79962 1.20624 1.21075 1.20057 1.21254 0.97209 0.95059 0.84088 1.46111 1.52544 1.31818 1.05216 1.20568 0.79802 0.83996 0.85007 1.90682 1.40175 1.28150 1.87215 1.22196 0.95931 1.02903 0.91976 0.83294 1.22383 0.94690 1.07040 0.94326 1.21004 0.83446 0.75482 0.89567 1.90681 1.25609 1.53366 1.74700 1.48568 1.11906 1.65423 1.08471 1.21192 1.00867 0.95513 0.77022 1.21892 0.99397 0.97954 0.97879 1.21473 1.02778 0.97872 0.92707 1.21571 0.98746 0.95129 1.00505 1.21478 1.00280 0.99218 0.93865 1.21872 1.01866 0.96739 0.96204 1.22013 0.89258 1.01241 0.87715 0.94016 0.92375 0.96451 0.96208 0.92185 0.94133 0.93141 0.93960 0.94243 0.75233 0.85227 0.87954 0.87233 0.93198 0.92386 0.90278 0.91520 0.90336 0.93460 0.90227 0.91112 0.91182 0.93149 0.90688 0.87286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.07 8.03 71.98 0.58 -4.49 16 2 C 0.05 2.18 0.50 -52.93 -0.03 2.15 16 3 C -0.12 -5.05 8.11 71.98 0.58 -4.47 16 4 C -0.53 -27.02 8.01 25.60 0.20 -26.81 16 5 H 0.04 2.35 7.75 -2.91 -0.02 2.32 16 6 C 0.03 1.44 5.13 84.65 0.43 1.87 16 7 N -0.90 -47.07 9.45 21.45 0.20 -46.87 16 8 Si 0.94 42.02 29.54 68.60 2.03 44.05 16 9 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 10 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 11 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 12 C 0.15 5.77 4.50 86.38 0.39 6.16 16 13 N -0.71 -20.91 4.85 -463.08 -2.25 -23.16 16 14 C 0.52 14.35 7.07 87.66 0.62 14.97 16 15 O -0.58 -20.67 15.57 -3.01 -0.05 -20.72 16 16 C -0.11 -1.98 3.54 -10.48 -0.04 -2.02 16 17 H 0.15 1.86 8.14 -2.39 -0.02 1.84 16 18 C -0.14 -2.80 6.37 30.59 0.19 -2.60 16 19 C 0.52 12.33 7.41 87.90 0.65 12.98 16 20 O -0.56 -17.44 15.11 -3.02 -0.05 -17.49 16 21 N -0.61 -11.88 2.83 -794.04 -2.25 -14.12 16 22 C 0.16 2.60 2.75 45.00 0.12 2.72 16 23 C -0.13 -2.45 5.21 30.59 0.16 -2.29 16 24 C -0.11 -1.46 5.92 30.60 0.18 -1.28 16 25 C -0.12 -1.55 5.92 30.60 0.18 -1.37 16 26 C -0.11 -1.30 5.92 30.59 0.18 -1.12 16 27 C -0.13 -2.08 5.21 30.60 0.16 -1.92 16 28 C 0.12 2.14 6.62 86.83 0.57 2.71 16 29 H 0.04 1.43 6.71 -2.39 -0.02 1.41 16 30 H 0.06 2.76 6.25 -2.39 -0.01 2.74 16 31 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.06 2.86 6.10 -2.39 -0.01 2.84 16 34 H 0.04 1.37 6.86 -2.39 -0.02 1.36 16 35 H 0.26 13.17 8.31 -92.71 -0.77 12.40 16 36 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 37 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.41 10.38 6.16 -92.71 -0.57 9.81 16 39 H 0.13 2.03 8.14 -2.38 -0.02 2.01 16 40 H 0.10 2.20 7.89 -2.39 -0.02 2.18 16 41 H 0.11 1.37 8.07 -2.39 -0.02 1.35 16 42 H 0.05 1.23 6.77 -2.39 -0.02 1.21 16 43 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 47 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 48 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 49 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 50 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 51 H 0.05 1.13 6.80 -2.39 -0.02 1.12 16 52 H 0.07 1.64 7.06 -2.38 -0.02 1.62 16 53 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -64.14 401.76 3.11 -61.03 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: 0.32 Total: 22.10 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: 5.15 Total: -4.82 kcal Atomic # 7 Polarization: -79.87 SS G_CDS: -4.29 Total: -84.16 kcal Atomic # 8 Polarization: -38.11 SS G_CDS: -0.09 Total: -38.20 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Total: -64.14 3.11 -61.03 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583916527.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.078 kcal (2) G-P(sol) polarization free energy of solvation -64.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds