Wall clock time and date at job start Tue Mar 31 2020 21:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47504 * 2 1 4 4 C 1.50700 * 109.47091 * 179.97438 * 3 2 1 5 5 O 1.21283 * 119.99903 * 0.02562 * 4 3 2 6 6 N 1.34772 * 119.99866 * 179.97438 * 4 3 2 7 7 C 1.46924 * 120.63325 * 359.97438 * 6 4 3 8 8 C 1.53184 * 108.77840 * 126.41102 * 7 6 4 9 9 C 1.53040 * 109.31088 * 54.63801 * 8 7 6 10 10 C 1.53043 * 109.54049 * 298.63403 * 9 8 7 11 11 H 1.09003 * 109.52004 * 301.40286 * 10 9 8 12 12 C 1.50693 * 109.50020 * 181.31643 * 10 9 8 13 13 O 1.21276 * 120.00055 * 264.80986 * 12 10 9 14 14 N 1.34781 * 119.99837 * 84.53073 * 12 10 9 15 15 C 1.46925 * 120.62957 * 175.06666 * 14 12 10 16 16 C 1.53192 * 108.77777 * 233.58923 * 15 14 12 17 17 C 1.53042 * 109.31170 * 305.36576 * 16 15 14 18 18 C 1.53047 * 109.53604 * 61.36544 * 17 16 15 19 19 H 1.08993 * 109.49780 * 58.58743 * 18 17 16 20 20 C 1.50700 * 109.49564 * 178.65167 * 18 17 16 21 21 H 1.07999 * 120.00087 * 119.99641 * 20 18 17 22 22 C 1.37878 * 120.00063 * 299.99945 * 20 18 17 23 23 N 1.31513 * 119.99946 * 359.97438 * 22 20 18 24 24 Si 1.86798 * 120.00064 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47448 * 59.99440 * 24 22 20 26 26 H 1.48498 * 109.47287 * 179.97438 * 24 22 20 27 27 H 1.48507 * 109.46797 * 299.99617 * 24 22 20 28 28 C 1.46925 * 120.63306 * 354.79221 * 14 12 10 29 29 C 1.46931 * 120.63046 * 180.02562 * 6 4 3 30 30 H 1.08999 * 109.47240 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47033 * 299.99973 * 1 2 3 32 32 H 1.09000 * 109.46878 * 60.00074 * 1 2 3 33 33 H 1.09002 * 109.47080 * 239.99472 * 2 1 3 34 34 H 1.09006 * 109.47083 * 120.00617 * 2 1 3 35 35 H 1.09002 * 109.46954 * 59.99979 * 3 2 1 36 36 H 1.09000 * 109.46993 * 299.99856 * 3 2 1 37 37 H 1.09010 * 109.58837 * 246.20123 * 7 6 4 38 38 H 1.09007 * 109.58561 * 6.62348 * 7 6 4 39 39 H 1.08999 * 109.49798 * 174.58522 * 8 7 6 40 40 H 1.08996 * 109.50304 * 294.65207 * 8 7 6 41 41 H 1.09004 * 109.45850 * 178.61385 * 9 8 7 42 42 H 1.09001 * 109.46331 * 58.65498 * 9 8 7 43 43 H 1.08999 * 109.58772 * 353.37304 * 15 14 12 44 44 H 1.08995 * 109.58696 * 113.65821 * 15 14 12 45 45 H 1.09009 * 109.49708 * 65.31527 * 16 15 14 46 46 H 1.08997 * 109.50246 * 185.40949 * 16 15 14 47 47 H 1.09005 * 109.46198 * 181.38121 * 17 16 15 48 48 H 1.09000 * 109.46029 * 301.35747 * 17 16 15 49 49 H 0.97001 * 119.99789 * 179.97438 * 23 22 20 50 50 H 1.08998 * 109.58259 * 246.20023 * 28 14 12 51 51 H 1.09001 * 109.58247 * 6.62176 * 28 14 12 52 52 H 1.09003 * 109.58707 * 113.80330 * 29 6 4 53 53 H 1.08996 * 109.70420 * 353.43968 * 29 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5471 1.4424 0.0006 5 8 4.1534 0.3920 0.0006 6 7 4.2210 2.6095 0.0002 7 6 3.5006 3.8900 -0.0014 8 6 4.0081 4.7428 1.1655 9 6 5.5295 4.8776 1.0696 10 6 6.1733 3.4926 1.1678 11 1 5.8892 3.0249 2.1105 12 6 7.6727 3.6294 1.1058 13 8 8.2502 3.5001 0.0472 14 7 8.3715 3.9009 2.2258 15 6 9.8403 3.9307 2.2030 16 6 10.3695 2.9941 3.2937 17 6 9.7537 3.3850 4.6391 18 6 8.2324 3.2337 4.5689 19 1 7.9805 2.2036 4.3172 20 6 7.6297 3.5871 5.9042 21 1 6.9208 4.3985 5.9789 22 6 7.9833 2.8746 7.0304 23 7 8.8461 1.8863 6.9392 24 14 7.2357 3.3122 8.6854 25 1 5.7596 3.1649 8.6163 26 1 7.7752 2.4030 9.7282 27 1 7.5775 4.7164 9.0272 28 6 7.6789 4.1786 3.4915 29 6 5.6902 2.6256 0.0003 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5140 0.8900 35 1 1.6768 1.9563 0.8900 36 1 1.6768 1.9563 -0.8900 37 1 3.6833 4.4109 -0.9414 38 1 2.4322 3.7083 0.1163 39 1 3.5517 5.7315 1.1190 40 1 3.7435 4.2640 2.1082 41 1 5.8906 5.5045 1.8850 42 1 5.7943 5.3343 0.1160 43 1 10.1975 3.5960 1.2291 44 1 10.1881 4.9465 2.3905 45 1 10.0974 1.9661 3.0539 46 1 11.4546 3.0795 3.3516 47 1 10.1475 2.7357 5.4211 48 1 10.0054 4.4209 4.8663 49 1 9.0951 1.3853 7.7317 50 1 7.8541 5.2138 3.7843 51 1 6.6095 4.0077 3.3679 52 1 6.0511 3.0437 -0.9395 53 1 6.0689 1.6103 0.1179 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597912282.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:38 Heat of formation + Delta-G solvation = -97.534753 kcal Electronic energy + Delta-G solvation = -30790.903448 eV Core-core repulsion = 26854.167817 eV Total energy + Delta-G solvation = -3936.735631 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.62851 -39.55808 -37.44814 -36.63405 -34.59880 -33.44033 -33.16401 -31.72912 -31.10966 -30.08132 -28.31815 -25.42230 -25.30672 -24.91066 -23.53466 -22.13015 -21.72564 -21.02099 -19.69980 -19.00137 -18.29192 -17.24900 -16.89304 -16.23524 -16.07620 -15.78392 -15.45396 -14.95479 -14.58527 -14.55113 -14.32807 -14.06973 -13.66718 -13.58150 -13.30660 -13.14078 -13.06471 -12.84442 -12.70494 -12.62140 -12.20658 -12.09987 -11.98029 -11.84419 -11.52474 -11.39554 -11.13617 -11.08741 -11.00045 -10.93279 -10.91561 -10.82884 -10.65726 -10.30185 -10.00311 -9.82370 -9.80794 -9.66298 -9.18862 -8.90979 -8.69554 -8.45133 -7.94773 -6.08026 -4.17048 2.57447 2.81128 3.00029 3.25274 3.31349 3.32042 3.54285 4.33489 4.34895 4.51787 4.67620 4.71574 4.78875 4.81243 4.90406 4.96627 5.15357 5.21050 5.25149 5.26192 5.32005 5.38675 5.43652 5.51916 5.61163 5.66518 5.70024 5.74679 5.79072 5.82714 5.85702 5.91096 5.95866 6.02468 6.06814 6.12864 6.17747 6.22779 6.30018 6.40455 6.48877 6.52933 6.74699 6.93575 7.13031 7.29458 7.32189 7.61702 7.84524 7.90518 8.02542 8.13081 8.28958 8.56929 8.86235 9.48556 10.97037 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.009907 B = 0.003437 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2825.667930 B = 8145.278492 C = 9689.962644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.111 4.111 3 C -0.139 4.139 4 C 0.512 3.488 5 O -0.538 6.538 6 N -0.614 5.614 7 C 0.106 3.894 8 C -0.134 4.134 9 C -0.108 4.108 10 C -0.123 4.123 11 H 0.103 0.897 12 C 0.522 3.478 13 O -0.561 6.561 14 N -0.600 5.600 15 C 0.115 3.885 16 C -0.134 4.134 17 C -0.112 4.112 18 C 0.040 3.960 19 H 0.030 0.970 20 C -0.520 4.520 21 H 0.056 0.944 22 C 0.065 3.935 23 N -0.886 5.886 24 Si 0.892 3.108 25 H -0.277 1.277 26 H -0.287 1.287 27 H -0.277 1.277 28 C 0.109 3.891 29 C 0.132 3.868 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.070 0.930 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.070 0.930 43 H 0.078 0.922 44 H 0.059 0.941 45 H 0.057 0.943 46 H 0.057 0.943 47 H 0.095 0.905 48 H 0.035 0.965 49 H 0.262 0.738 50 H 0.060 0.940 51 H 0.072 0.928 52 H 0.079 0.921 53 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.851 5.131 -12.827 18.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.149 4.149 3 C -0.178 4.178 4 C 0.301 3.699 5 O -0.414 6.414 6 N -0.347 5.347 7 C -0.017 4.017 8 C -0.173 4.173 9 C -0.146 4.146 10 C -0.145 4.145 11 H 0.121 0.879 12 C 0.309 3.691 13 O -0.441 6.441 14 N -0.331 5.331 15 C -0.008 4.008 16 C -0.173 4.173 17 C -0.150 4.150 18 C 0.021 3.979 19 H 0.048 0.952 20 C -0.558 4.558 21 H 0.074 0.926 22 C -0.137 4.137 23 N -0.524 5.524 24 Si 0.720 3.280 25 H -0.202 1.202 26 H -0.213 1.213 27 H -0.202 1.202 28 C -0.013 4.013 29 C 0.009 3.991 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.112 0.888 36 H 0.109 0.891 37 H 0.089 0.911 38 H 0.105 0.895 39 H 0.099 0.901 40 H 0.092 0.908 41 H 0.094 0.906 42 H 0.088 0.912 43 H 0.097 0.903 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.075 0.925 47 H 0.114 0.886 48 H 0.054 0.946 49 H 0.072 0.928 50 H 0.078 0.922 51 H 0.090 0.910 52 H 0.097 0.903 53 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -12.125 4.353 -13.257 18.485 hybrid contribution -0.271 0.382 1.217 1.303 sum -12.395 4.734 -12.040 17.917 Atomic orbital electron populations 1.21790 0.95525 1.01951 1.01677 1.21303 0.95175 0.94745 1.03708 1.21745 0.91818 1.00168 1.04114 1.20784 0.90360 0.83099 0.75667 1.90717 1.70408 1.30903 1.49408 1.48149 1.06930 1.06018 1.73645 1.21799 0.96645 0.84173 0.99122 1.21928 0.95849 1.00398 0.99081 1.21469 0.94882 0.95050 1.03224 1.21667 0.92726 0.98394 1.01739 0.87922 1.20265 0.88996 0.76304 0.83543 1.90626 1.71705 1.52518 1.29272 1.48292 1.07089 1.67834 1.09852 1.21577 0.79380 0.99607 1.00189 1.22001 0.99108 0.98999 0.97146 1.21633 0.98224 1.00249 0.94933 1.19053 0.92350 0.94560 0.91958 0.95163 1.21000 1.25651 1.17059 0.92136 0.92552 1.24941 0.94940 0.94785 0.99032 1.69864 1.32501 1.20489 1.29499 0.86655 0.79535 0.78300 0.83491 1.20246 1.21266 1.20239 1.22296 0.96035 1.00256 0.82691 1.21359 0.78429 1.01649 0.97664 0.92426 0.92636 0.92807 0.91290 0.91067 0.88824 0.89065 0.91123 0.89538 0.90118 0.90773 0.90594 0.91169 0.90320 0.92300 0.92440 0.92485 0.88641 0.94598 0.92791 0.92215 0.90952 0.90257 0.88711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.91 37.16 0.37 -0.69 16 2 C -0.11 -1.05 5.22 -26.73 -0.14 -1.19 16 3 C -0.14 -1.21 4.05 -27.88 -0.11 -1.33 16 4 C 0.51 6.73 7.70 -10.99 -0.08 6.64 16 5 O -0.54 -9.44 15.40 5.56 0.09 -9.35 16 6 N -0.61 -7.37 2.97 -172.74 -0.51 -7.88 16 7 C 0.11 0.86 6.34 -3.72 -0.02 0.84 16 8 C -0.13 -1.16 6.08 -26.62 -0.16 -1.32 16 9 C -0.11 -1.23 4.94 -26.69 -0.13 -1.36 16 10 C -0.12 -1.80 1.81 -91.63 -0.17 -1.97 16 11 H 0.10 1.64 6.53 -51.93 -0.34 1.30 16 12 C 0.52 9.29 6.81 -10.99 -0.07 9.22 16 13 O -0.56 -11.28 15.42 5.56 0.09 -11.19 16 14 N -0.60 -10.97 2.97 -172.51 -0.51 -11.48 16 15 C 0.11 2.04 6.41 -3.71 -0.02 2.02 16 16 C -0.13 -2.56 6.08 -26.61 -0.16 -2.72 16 17 C -0.11 -2.51 4.96 -26.69 -0.13 -2.64 16 18 C 0.04 0.93 2.26 -91.43 -0.21 0.72 16 19 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 20 C -0.52 -13.24 8.57 -34.44 -0.29 -13.54 16 21 H 0.06 1.39 7.74 -52.49 -0.41 0.98 16 22 C 0.07 1.71 5.30 -17.82 -0.09 1.62 16 23 N -0.89 -24.35 11.31 55.43 0.63 -23.73 16 24 Si 0.89 20.31 29.54 -169.99 -5.02 15.29 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 27 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 28 C 0.11 2.06 5.05 -3.49 -0.02 2.04 16 29 C 0.13 1.92 5.34 -3.68 -0.02 1.90 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 34 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 35 H 0.09 0.68 7.69 -51.93 -0.40 0.28 16 36 H 0.09 0.60 7.94 -51.93 -0.41 0.18 16 37 H 0.07 0.51 8.14 -51.92 -0.42 0.08 16 38 H 0.09 0.50 5.93 -51.92 -0.31 0.19 16 39 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.08 0.89 7.30 -51.93 -0.38 0.51 16 42 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.08 1.40 7.04 -51.93 -0.37 1.04 16 44 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 45 H 0.06 1.17 8.14 -51.92 -0.42 0.75 16 46 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 47 H 0.10 2.42 6.04 -51.93 -0.31 2.11 16 48 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 49 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 50 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 51 H 0.07 1.28 5.08 -51.93 -0.26 1.01 16 52 H 0.08 1.16 7.69 -51.93 -0.40 0.76 16 53 H 0.09 1.64 7.01 -51.93 -0.36 1.27 16 LS Contribution 402.13 15.07 6.06 6.06 Total: -1.00 -31.02 402.13 -10.09 -41.11 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -9.42 Total: 2.95 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: -1.48 Total: -1.77 kcal Atomic # 7 Polarization: -42.69 SS G_CDS: -0.40 Total: -43.09 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: 0.17 Total: -20.54 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -31.02 -10.09 -41.11 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597912282.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.427 kcal (2) G-P(sol) polarization free energy of solvation -31.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds