Wall clock time and date at job start Tue Mar 31 2020 21:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47504 * 2 1 4 4 C 1.50700 * 109.47091 * 179.97438 * 3 2 1 5 5 O 1.21283 * 119.99903 * 0.02562 * 4 3 2 6 6 N 1.34772 * 119.99866 * 179.97438 * 4 3 2 7 7 C 1.46924 * 120.63325 * 359.97438 * 6 4 3 8 8 C 1.53184 * 108.77840 * 126.41102 * 7 6 4 9 9 C 1.53040 * 109.31088 * 54.63801 * 8 7 6 10 10 C 1.53043 * 109.54049 * 298.63403 * 9 8 7 11 11 H 1.09003 * 109.52004 * 301.40286 * 10 9 8 12 12 C 1.50693 * 109.50020 * 181.31643 * 10 9 8 13 13 O 1.21276 * 120.00055 * 264.80986 * 12 10 9 14 14 N 1.34781 * 119.99837 * 84.53073 * 12 10 9 15 15 C 1.46925 * 120.62957 * 175.06666 * 14 12 10 16 16 C 1.53192 * 108.77777 * 233.58923 * 15 14 12 17 17 C 1.53042 * 109.31170 * 305.36576 * 16 15 14 18 18 C 1.53047 * 109.53604 * 61.36544 * 17 16 15 19 19 H 1.08993 * 109.49780 * 58.58743 * 18 17 16 20 20 C 1.50700 * 109.49564 * 178.65167 * 18 17 16 21 21 H 1.07999 * 120.00087 * 119.99641 * 20 18 17 22 22 C 1.37878 * 120.00063 * 299.99945 * 20 18 17 23 23 N 1.31513 * 119.99946 * 359.97438 * 22 20 18 24 24 Si 1.86798 * 120.00064 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47448 * 59.99440 * 24 22 20 26 26 H 1.48498 * 109.47287 * 179.97438 * 24 22 20 27 27 H 1.48507 * 109.46797 * 299.99617 * 24 22 20 28 28 C 1.46925 * 120.63306 * 354.79221 * 14 12 10 29 29 C 1.46931 * 120.63046 * 180.02562 * 6 4 3 30 30 H 1.08999 * 109.47240 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47033 * 299.99973 * 1 2 3 32 32 H 1.09000 * 109.46878 * 60.00074 * 1 2 3 33 33 H 1.09002 * 109.47080 * 239.99472 * 2 1 3 34 34 H 1.09006 * 109.47083 * 120.00617 * 2 1 3 35 35 H 1.09002 * 109.46954 * 59.99979 * 3 2 1 36 36 H 1.09000 * 109.46993 * 299.99856 * 3 2 1 37 37 H 1.09010 * 109.58837 * 246.20123 * 7 6 4 38 38 H 1.09007 * 109.58561 * 6.62348 * 7 6 4 39 39 H 1.08999 * 109.49798 * 174.58522 * 8 7 6 40 40 H 1.08996 * 109.50304 * 294.65207 * 8 7 6 41 41 H 1.09004 * 109.45850 * 178.61385 * 9 8 7 42 42 H 1.09001 * 109.46331 * 58.65498 * 9 8 7 43 43 H 1.08999 * 109.58772 * 353.37304 * 15 14 12 44 44 H 1.08995 * 109.58696 * 113.65821 * 15 14 12 45 45 H 1.09009 * 109.49708 * 65.31527 * 16 15 14 46 46 H 1.08997 * 109.50246 * 185.40949 * 16 15 14 47 47 H 1.09005 * 109.46198 * 181.38121 * 17 16 15 48 48 H 1.09000 * 109.46029 * 301.35747 * 17 16 15 49 49 H 0.97001 * 119.99789 * 179.97438 * 23 22 20 50 50 H 1.08998 * 109.58259 * 246.20023 * 28 14 12 51 51 H 1.09001 * 109.58247 * 6.62176 * 28 14 12 52 52 H 1.09003 * 109.58707 * 113.80330 * 29 6 4 53 53 H 1.08996 * 109.70420 * 353.43968 * 29 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5471 1.4424 0.0006 5 8 4.1534 0.3920 0.0006 6 7 4.2210 2.6095 0.0002 7 6 3.5006 3.8900 -0.0014 8 6 4.0081 4.7428 1.1655 9 6 5.5295 4.8776 1.0696 10 6 6.1733 3.4926 1.1678 11 1 5.8892 3.0249 2.1105 12 6 7.6727 3.6294 1.1058 13 8 8.2502 3.5001 0.0472 14 7 8.3715 3.9009 2.2258 15 6 9.8403 3.9307 2.2030 16 6 10.3695 2.9941 3.2937 17 6 9.7537 3.3850 4.6391 18 6 8.2324 3.2337 4.5689 19 1 7.9805 2.2036 4.3172 20 6 7.6297 3.5871 5.9042 21 1 6.9208 4.3985 5.9789 22 6 7.9833 2.8746 7.0304 23 7 8.8461 1.8863 6.9392 24 14 7.2357 3.3122 8.6854 25 1 5.7596 3.1649 8.6163 26 1 7.7752 2.4030 9.7282 27 1 7.5775 4.7164 9.0272 28 6 7.6789 4.1786 3.4915 29 6 5.6902 2.6256 0.0003 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5140 0.8900 35 1 1.6768 1.9563 0.8900 36 1 1.6768 1.9563 -0.8900 37 1 3.6833 4.4109 -0.9414 38 1 2.4322 3.7083 0.1163 39 1 3.5517 5.7315 1.1190 40 1 3.7435 4.2640 2.1082 41 1 5.8906 5.5045 1.8850 42 1 5.7943 5.3343 0.1160 43 1 10.1975 3.5960 1.2291 44 1 10.1881 4.9465 2.3905 45 1 10.0974 1.9661 3.0539 46 1 11.4546 3.0795 3.3516 47 1 10.1475 2.7357 5.4211 48 1 10.0054 4.4209 4.8663 49 1 9.0951 1.3853 7.7317 50 1 7.8541 5.2138 3.7843 51 1 6.6095 4.0077 3.3679 52 1 6.0511 3.0437 -0.9395 53 1 6.0689 1.6103 0.1179 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597912282.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:36 Heat of formation + Delta-G solvation = -114.887079 kcal Electronic energy + Delta-G solvation = -30791.655901 eV Core-core repulsion = 26854.167817 eV Total energy + Delta-G solvation = -3937.488085 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.81160 -40.82320 -38.73825 -38.02278 -35.37371 -35.22066 -34.35725 -33.07408 -32.32187 -31.77582 -29.09572 -27.08540 -26.54118 -26.19877 -24.77522 -23.23892 -22.92774 -22.16693 -21.18593 -19.96664 -19.76946 -18.61147 -18.11309 -17.93079 -17.09656 -16.82707 -16.81253 -16.46206 -16.12020 -15.54171 -15.27671 -15.13933 -15.09608 -14.88583 -14.71331 -14.38747 -14.30497 -13.99713 -13.89065 -13.72814 -13.57824 -13.50938 -12.87597 -12.82956 -12.76557 -12.66217 -12.60166 -12.48029 -12.24904 -12.03113 -11.97454 -11.84179 -11.80159 -11.66437 -11.62060 -11.61215 -11.33415 -10.90405 -10.82686 -10.59944 -10.42383 -9.70879 -9.53361 -8.08172 -6.24179 1.44838 1.45600 1.48522 1.53133 1.61914 1.85385 2.18890 2.45417 3.19381 3.42106 3.51658 3.69058 3.82317 3.93621 4.00270 4.06330 4.11999 4.15284 4.16877 4.22911 4.28487 4.43504 4.50857 4.52734 4.57356 4.65369 4.70090 4.71066 4.75138 4.77696 4.80248 4.82185 4.86448 4.91366 4.92736 5.05479 5.07960 5.12490 5.23184 5.25480 5.28762 5.35977 5.40524 5.43067 5.50172 5.58929 5.62418 5.91047 6.07933 6.31088 6.39515 6.46125 6.87570 7.09996 7.15778 7.45101 8.95539 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.009907 B = 0.003437 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2825.667930 B = 8145.278492 C = 9689.962644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.113 4.113 3 C -0.128 4.128 4 C 0.501 3.499 5 O -0.597 6.597 6 N -0.611 5.611 7 C 0.099 3.901 8 C -0.129 4.129 9 C -0.105 4.105 10 C -0.115 4.115 11 H 0.086 0.914 12 C 0.518 3.482 13 O -0.586 6.586 14 N -0.605 5.605 15 C 0.116 3.884 16 C -0.125 4.125 17 C -0.106 4.106 18 C 0.037 3.963 19 H -0.014 1.014 20 C -0.531 4.531 21 H 0.066 0.934 22 C 0.013 3.987 23 N -0.918 5.918 24 Si 0.955 3.045 25 H -0.270 1.270 26 H -0.292 1.292 27 H -0.266 1.266 28 C 0.124 3.876 29 C 0.138 3.862 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.051 0.949 34 H 0.044 0.956 35 H 0.119 0.881 36 H 0.126 0.874 37 H 0.089 0.911 38 H 0.121 0.879 39 H 0.116 0.884 40 H 0.066 0.934 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.082 0.918 45 H 0.034 0.966 46 H 0.081 0.919 47 H 0.061 0.939 48 H 0.041 0.959 49 H 0.259 0.741 50 H 0.074 0.926 51 H 0.085 0.915 52 H 0.078 0.922 53 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.609 8.312 -13.295 22.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.151 4.151 3 C -0.167 4.167 4 C 0.292 3.708 5 O -0.478 6.478 6 N -0.344 5.344 7 C -0.022 4.022 8 C -0.167 4.167 9 C -0.143 4.143 10 C -0.137 4.137 11 H 0.104 0.896 12 C 0.307 3.693 13 O -0.467 6.467 14 N -0.335 5.335 15 C -0.006 4.006 16 C -0.163 4.163 17 C -0.144 4.144 18 C 0.018 3.982 19 H 0.004 0.996 20 C -0.569 4.569 21 H 0.085 0.915 22 C -0.186 4.186 23 N -0.558 5.558 24 Si 0.781 3.219 25 H -0.195 1.195 26 H -0.218 1.218 27 H -0.191 1.191 28 C 0.002 3.998 29 C 0.014 3.986 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.137 0.863 36 H 0.144 0.856 37 H 0.107 0.893 38 H 0.139 0.861 39 H 0.134 0.866 40 H 0.085 0.915 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.097 0.903 44 H 0.100 0.900 45 H 0.052 0.948 46 H 0.099 0.901 47 H 0.079 0.921 48 H 0.060 0.940 49 H 0.068 0.932 50 H 0.093 0.907 51 H 0.103 0.897 52 H 0.096 0.904 53 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.913 7.584 -13.730 21.643 hybrid contribution 0.647 -0.657 1.334 1.621 sum -14.266 6.928 -12.396 20.129 Atomic orbital electron populations 1.21741 0.93122 1.02367 1.03002 1.21290 0.97136 0.95080 1.01636 1.21812 0.87928 1.00160 1.06825 1.21735 0.92288 0.82423 0.74393 1.90693 1.71857 1.33100 1.52113 1.48297 1.05732 1.07600 1.72728 1.22196 0.98041 0.82059 0.99901 1.21948 0.93520 1.02318 0.98868 1.21522 0.96889 0.92253 1.03617 1.21629 0.90648 1.00691 1.00723 0.89595 1.20831 0.90333 0.75246 0.82931 1.90607 1.72527 1.53504 1.30084 1.48355 1.07421 1.67993 1.09767 1.21601 0.79231 1.00335 0.99414 1.21886 1.00497 0.98011 0.95926 1.21457 0.97698 0.99673 0.95611 1.18987 0.93232 0.93125 0.92863 0.99620 1.21418 1.25504 1.16970 0.93016 0.91543 1.25751 0.95416 0.94785 1.02629 1.70035 1.33962 1.21659 1.30099 0.85657 0.78878 0.78231 0.79172 1.19498 1.21771 1.19132 1.22054 0.96509 0.99604 0.81585 1.21056 0.80694 0.99275 0.97541 0.92618 0.91581 0.91075 0.93037 0.93742 0.86284 0.85613 0.89270 0.86061 0.86612 0.91542 0.90563 0.90464 0.90277 0.90018 0.94759 0.90066 0.92068 0.93973 0.93185 0.90728 0.89722 0.90363 0.92690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.91 71.98 0.71 -0.98 16 2 C -0.11 -2.06 5.22 30.59 0.16 -1.90 16 3 C -0.13 -1.92 4.05 29.85 0.12 -1.80 16 4 C 0.50 13.02 7.70 87.66 0.67 13.69 16 5 O -0.60 -22.26 15.40 -3.04 -0.05 -22.31 16 6 N -0.61 -14.00 2.97 -818.80 -2.43 -16.43 16 7 C 0.10 1.22 6.34 86.36 0.55 1.76 16 8 C -0.13 -1.72 6.08 30.67 0.19 -1.53 16 9 C -0.10 -2.13 4.94 30.62 0.15 -1.98 16 10 C -0.11 -3.36 1.81 -11.45 -0.02 -3.38 16 11 H 0.09 2.80 6.53 -2.39 -0.02 2.79 16 12 C 0.52 18.57 6.81 87.65 0.60 19.17 16 13 O -0.59 -23.81 15.42 -3.02 -0.05 -23.86 16 14 N -0.60 -22.04 2.97 -818.09 -2.43 -24.47 16 15 C 0.12 4.07 6.41 86.36 0.55 4.63 16 16 C -0.13 -4.84 6.08 30.67 0.19 -4.65 16 17 C -0.11 -4.84 4.96 30.62 0.15 -4.69 16 18 C 0.04 1.77 2.26 -11.32 -0.03 1.74 16 19 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 20 C -0.53 -27.16 8.57 25.60 0.22 -26.94 16 21 H 0.07 3.19 7.74 -2.91 -0.02 3.17 16 22 C 0.01 0.69 5.30 84.66 0.45 1.14 16 23 N -0.92 -52.23 11.31 21.45 0.24 -51.98 16 24 Si 0.95 41.66 29.54 68.60 2.03 43.69 16 25 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 26 H -0.29 -12.85 7.11 99.48 0.71 -12.15 16 27 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 28 C 0.12 4.64 5.05 86.51 0.44 5.08 16 29 C 0.14 4.14 5.34 86.38 0.46 4.60 16 30 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.05 1.09 8.10 -2.39 -0.02 1.07 16 34 H 0.04 1.02 8.10 -2.38 -0.02 1.00 16 35 H 0.12 1.24 7.69 -2.39 -0.02 1.22 16 36 H 0.13 1.07 7.94 -2.39 -0.02 1.05 16 37 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 38 H 0.12 0.71 5.93 -2.38 -0.01 0.69 16 39 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.08 1.57 7.30 -2.38 -0.02 1.55 16 42 H 0.08 1.49 8.14 -2.39 -0.02 1.48 16 43 H 0.08 2.79 7.04 -2.39 -0.02 2.77 16 44 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 45 H 0.03 1.46 8.14 -2.38 -0.02 1.44 16 46 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 47 H 0.06 3.23 6.04 -2.38 -0.01 3.22 16 48 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 49 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 50 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 51 H 0.08 2.94 5.08 -2.39 -0.01 2.93 16 52 H 0.08 2.33 7.69 -2.39 -0.02 2.31 16 53 H 0.05 2.07 7.01 -2.39 -0.02 2.05 16 Total: -1.00 -72.88 402.13 3.75 -69.13 By element: Atomic # 1 Polarization: 21.39 SS G_CDS: 0.87 Total: 22.26 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: 5.56 Total: 3.97 kcal Atomic # 7 Polarization: -88.27 SS G_CDS: -4.62 Total: -92.88 kcal Atomic # 8 Polarization: -46.07 SS G_CDS: -0.09 Total: -46.17 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.69 kcal Total: -72.88 3.75 -69.13 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597912282.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.757 kcal (2) G-P(sol) polarization free energy of solvation -72.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds