Wall clock time and date at job start Tue Mar 31 2020 21:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47256 * 2 1 4 4 C 1.50696 * 109.47115 * 180.02562 * 3 2 1 5 5 O 1.21279 * 120.00232 * 359.97438 * 4 3 2 6 6 N 1.34777 * 119.99977 * 180.02562 * 4 3 2 7 7 C 1.46928 * 120.63004 * 359.71560 * 6 4 3 8 8 C 1.52764 * 109.00480 * 233.58505 * 7 6 4 9 9 C 1.53035 * 109.38499 * 305.58761 * 8 7 6 10 10 C 1.53042 * 109.53744 * 61.24385 * 9 8 7 11 11 H 1.08994 * 109.49545 * 58.58553 * 10 9 8 12 12 C 1.50700 * 109.51947 * 178.66589 * 10 9 8 13 13 O 1.21279 * 119.99990 * 95.36460 * 12 10 9 14 14 N 1.34776 * 120.00320 * 275.35729 * 12 10 9 15 15 C 1.46927 * 120.62831 * 5.21031 * 14 12 10 16 16 C 1.53184 * 108.77817 * 233.58587 * 15 14 12 17 17 C 1.53043 * 109.31281 * 305.36351 * 16 15 14 18 18 C 1.53042 * 109.53492 * 61.36611 * 17 16 15 19 19 H 1.09009 * 109.50059 * 58.61957 * 18 17 16 20 20 C 1.50699 * 109.49930 * 178.68229 * 18 17 16 21 21 H 1.08002 * 120.00142 * 119.99840 * 20 18 17 22 22 C 1.37885 * 119.99975 * 300.00137 * 20 18 17 23 23 N 1.31511 * 119.99969 * 359.97438 * 22 20 18 24 24 Si 1.86799 * 120.00016 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.46842 * 89.99730 * 24 22 20 26 26 H 1.48496 * 109.46980 * 209.99995 * 24 22 20 27 27 H 1.48503 * 109.47071 * 330.00367 * 24 22 20 28 28 C 1.46919 * 120.63111 * 184.93262 * 14 12 10 29 29 C 1.46927 * 120.63201 * 179.97438 * 6 4 3 30 30 H 1.08997 * 109.47565 * 59.99785 * 1 2 3 31 31 H 1.09004 * 109.46818 * 300.00000 * 1 2 3 32 32 H 1.09002 * 109.47242 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47565 * 120.00215 * 2 1 3 34 34 H 1.09004 * 109.46818 * 240.00000 * 2 1 3 35 35 H 1.09003 * 109.46575 * 300.00023 * 3 2 1 36 36 H 1.08990 * 109.47148 * 60.00080 * 3 2 1 37 37 H 1.09002 * 109.58698 * 353.41741 * 7 6 4 38 38 H 1.08995 * 109.58942 * 113.84930 * 7 6 4 39 39 H 1.09004 * 109.56255 * 185.55060 * 8 7 6 40 40 H 1.08998 * 109.38416 * 65.52126 * 8 7 6 41 41 H 1.08993 * 109.45832 * 301.21822 * 9 8 7 42 42 H 1.09002 * 109.45706 * 181.26044 * 9 8 7 43 43 H 1.09002 * 109.58662 * 353.37564 * 15 14 12 44 44 H 1.09000 * 109.58643 * 113.65079 * 15 14 12 45 45 H 1.09000 * 109.50024 * 65.32003 * 16 15 14 46 46 H 1.09004 * 109.50135 * 185.41365 * 16 15 14 47 47 H 1.08999 * 109.46173 * 181.38337 * 17 16 15 48 48 H 1.08991 * 109.46233 * 301.35944 * 17 16 15 49 49 H 0.96995 * 120.00324 * 180.02562 * 23 22 20 50 50 H 1.09001 * 109.58709 * 246.19650 * 28 14 12 51 51 H 1.08995 * 109.58990 * 6.62698 * 28 14 12 52 52 H 1.08998 * 109.58635 * 246.15788 * 29 6 4 53 53 H 1.08999 * 109.58338 * 6.57819 * 29 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 8 4.1534 0.3922 -0.0006 6 7 4.2209 2.6097 -0.0002 7 6 3.5003 3.8901 -0.0054 8 6 4.0081 4.7420 -1.1674 9 6 5.5295 4.8769 -1.0715 10 6 6.1732 3.4918 -1.1684 11 1 5.8888 3.0236 -2.1107 12 6 7.6728 3.6281 -1.1068 13 8 8.2507 3.4965 -0.0487 14 7 8.3717 3.8960 -2.2276 15 6 7.6792 4.1704 -3.4940 16 6 8.2277 3.2283 -4.5702 17 6 9.7496 3.3732 -4.6418 18 6 10.3649 2.9804 -3.2968 19 1 10.0893 1.9535 -3.0565 20 6 11.8655 3.0924 -3.3783 21 1 12.3937 3.7636 -2.7172 22 6 12.5643 2.3379 -4.2968 23 7 11.9212 1.5202 -5.1014 24 14 14.4243 2.4772 -4.3983 25 1 15.0455 1.4863 -3.4832 26 1 14.8654 2.2097 -5.7908 27 1 14.8406 3.8463 -4.0014 28 6 9.8404 3.9253 -2.2048 29 6 5.6901 2.6258 -0.0003 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8934 -0.5138 0.8899 34 1 1.8933 -0.5139 -0.8900 35 1 1.6766 1.9563 -0.8900 36 1 1.6767 1.9563 0.8899 37 1 2.4325 3.7080 -0.1270 38 1 3.6793 4.4140 0.9335 39 1 3.5515 5.7307 -1.1219 40 1 3.7440 4.2624 -2.1100 41 1 5.7940 5.3344 -0.1183 42 1 5.8906 5.5030 -1.8874 43 1 6.6097 4.0003 -3.3700 44 1 7.8527 5.2055 -3.7886 45 1 7.9716 2.1993 -4.3178 46 1 7.7919 3.4857 -5.5356 47 1 10.1400 2.7219 -5.4238 48 1 10.0055 4.4078 -4.8697 49 1 12.4128 0.9892 -5.7473 50 1 10.1888 4.9399 -2.3978 51 1 10.1975 3.5933 -1.2300 52 1 6.0509 3.0446 0.9392 53 1 6.0666 1.6098 -0.1183 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597912285.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:44 Heat of formation + Delta-G solvation = -115.849170 kcal Electronic energy + Delta-G solvation = -30464.204299 eV Core-core repulsion = 26526.674495 eV Total energy + Delta-G solvation = -3937.529804 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.81156 -40.81684 -38.74696 -38.00855 -35.46818 -35.35371 -34.12921 -32.99750 -32.45833 -31.77608 -29.10800 -27.18674 -26.54949 -26.19210 -24.57220 -23.37198 -22.91398 -22.19114 -21.13064 -19.96131 -19.76888 -18.63006 -18.16642 -17.94935 -17.07287 -16.83114 -16.70764 -16.57268 -16.10674 -15.48155 -15.29089 -15.13220 -15.07854 -14.89706 -14.74731 -14.38464 -14.31184 -13.98966 -13.89063 -13.70976 -13.58875 -13.58071 -12.91532 -12.86517 -12.79706 -12.65265 -12.57511 -12.48353 -12.22434 -12.00435 -11.95335 -11.86607 -11.78743 -11.68158 -11.60929 -11.58585 -11.30318 -10.92549 -10.84343 -10.61697 -10.44962 -9.71183 -9.53023 -8.13353 -6.28954 1.38537 1.39816 1.48979 1.51557 1.63162 1.84423 2.19364 2.41775 3.13061 3.40457 3.52203 3.68200 3.82082 3.91966 3.99399 4.08372 4.10988 4.13857 4.21355 4.21710 4.33755 4.44981 4.51258 4.56473 4.59130 4.66845 4.71551 4.72266 4.75233 4.78578 4.82285 4.83599 4.88712 4.92326 4.94088 5.07758 5.10280 5.11597 5.24183 5.27105 5.29764 5.37951 5.43382 5.45682 5.51308 5.52684 5.58454 5.89798 6.10602 6.31164 6.40447 6.51293 6.80677 7.13361 7.17441 7.39297 8.90400 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.018412 B = 0.002494 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.369084 B =11223.861309 C =11697.584335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.114 4.114 3 C -0.127 4.127 4 C 0.501 3.499 5 O -0.597 6.597 6 N -0.609 5.609 7 C 0.096 3.904 8 C -0.125 4.125 9 C -0.107 4.107 10 C -0.107 4.107 11 H 0.103 0.897 12 C 0.510 3.490 13 O -0.594 6.594 14 N -0.605 5.605 15 C 0.110 3.890 16 C -0.129 4.129 17 C -0.105 4.105 18 C 0.040 3.960 19 H -0.019 1.019 20 C -0.538 4.538 21 H 0.053 0.947 22 C 0.015 3.985 23 N -0.914 5.914 24 Si 0.957 3.043 25 H -0.281 1.281 26 H -0.279 1.279 27 H -0.265 1.265 28 C 0.130 3.870 29 C 0.134 3.866 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.053 0.947 33 H 0.047 0.953 34 H 0.047 0.953 35 H 0.125 0.875 36 H 0.122 0.878 37 H 0.124 0.876 38 H 0.081 0.919 39 H 0.116 0.884 40 H 0.078 0.922 41 H 0.067 0.933 42 H 0.086 0.914 43 H 0.110 0.890 44 H 0.089 0.911 45 H 0.038 0.962 46 H 0.092 0.908 47 H 0.061 0.939 48 H 0.041 0.959 49 H 0.262 0.738 50 H 0.065 0.935 51 H 0.050 0.950 52 H 0.069 0.931 53 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.858 9.595 5.319 29.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.152 4.152 3 C -0.166 4.166 4 C 0.292 3.708 5 O -0.478 6.478 6 N -0.342 5.342 7 C -0.025 4.025 8 C -0.163 4.163 9 C -0.145 4.145 10 C -0.129 4.129 11 H 0.121 0.879 12 C 0.299 3.701 13 O -0.475 6.475 14 N -0.336 5.336 15 C -0.012 4.012 16 C -0.167 4.167 17 C -0.143 4.143 18 C 0.021 3.979 19 H -0.001 1.001 20 C -0.576 4.576 21 H 0.072 0.928 22 C -0.184 4.184 23 N -0.553 5.553 24 Si 0.782 3.218 25 H -0.207 1.207 26 H -0.204 1.204 27 H -0.190 1.190 28 C 0.007 3.993 29 C 0.010 3.990 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.143 0.857 36 H 0.140 0.860 37 H 0.142 0.858 38 H 0.099 0.901 39 H 0.134 0.866 40 H 0.097 0.903 41 H 0.086 0.914 42 H 0.104 0.896 43 H 0.128 0.872 44 H 0.107 0.893 45 H 0.057 0.943 46 H 0.110 0.890 47 H 0.080 0.920 48 H 0.060 0.940 49 H 0.071 0.929 50 H 0.084 0.916 51 H 0.069 0.931 52 H 0.087 0.913 53 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -27.229 8.880 5.715 29.205 hybrid contribution 2.182 -0.806 -0.078 2.328 sum -25.047 8.073 5.637 26.913 Atomic orbital electron populations 1.21740 0.93137 1.02323 1.03037 1.21292 0.97109 0.95167 1.01627 1.21806 0.87770 1.00071 1.06935 1.21760 0.92294 0.82369 0.74401 1.90708 1.71867 1.33178 1.52071 1.48291 1.05466 1.07645 1.72797 1.22131 0.98140 0.82126 1.00118 1.21873 0.93079 1.02285 0.99053 1.21564 0.97065 0.92109 1.03761 1.21620 0.89458 1.00782 1.01058 0.87925 1.21122 0.90700 0.75351 0.82933 1.90637 1.72837 1.53241 1.30833 1.48363 1.07089 1.68184 1.09922 1.22043 0.97318 0.99964 0.81845 1.21927 0.96672 0.98696 0.99430 1.21415 0.93445 0.99678 0.99786 1.18964 0.94272 0.92344 0.92297 1.00080 1.21441 0.92782 1.24515 1.18870 0.92839 1.25726 1.02853 0.94668 0.95166 1.70012 1.36840 1.26444 1.22034 0.85580 0.80240 0.78667 0.77321 1.20724 1.20443 1.18950 1.21650 0.78440 0.99769 0.99416 1.21051 0.80871 0.99375 0.97691 0.91262 0.91314 0.92742 0.93444 0.93419 0.85717 0.85952 0.85847 0.90066 0.86596 0.90337 0.91426 0.89571 0.87171 0.89271 0.94347 0.88971 0.92022 0.93999 0.92924 0.91627 0.93146 0.91257 0.92792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.91 71.98 0.71 -0.61 16 2 C -0.11 -1.77 5.22 30.59 0.16 -1.61 16 3 C -0.13 -1.50 4.05 29.85 0.12 -1.38 16 4 C 0.50 11.54 7.70 87.66 0.67 12.21 16 5 O -0.60 -20.86 15.39 -3.03 -0.05 -20.91 16 6 N -0.61 -12.18 2.98 -819.67 -2.44 -14.62 16 7 C 0.10 0.86 6.31 86.22 0.54 1.41 16 8 C -0.13 -0.99 6.06 30.53 0.19 -0.80 16 9 C -0.11 -1.70 4.95 30.62 0.15 -1.55 16 10 C -0.11 -2.71 1.81 -11.45 -0.02 -2.73 16 11 H 0.10 2.46 6.52 -2.39 -0.02 2.44 16 12 C 0.51 18.44 6.81 87.66 0.60 19.03 16 13 O -0.59 -26.64 15.42 -3.02 -0.05 -26.69 16 14 N -0.60 -22.13 2.97 -818.10 -2.43 -24.56 16 15 C 0.11 3.04 5.80 86.36 0.50 3.54 16 16 C -0.13 -4.42 6.08 30.67 0.19 -4.23 16 17 C -0.11 -4.78 4.96 30.62 0.15 -4.63 16 18 C 0.04 2.09 2.27 -11.32 -0.03 2.07 16 19 H -0.02 -1.15 8.14 -2.38 -0.02 -1.17 16 20 C -0.54 -30.40 8.56 25.60 0.22 -30.18 16 21 H 0.05 2.98 7.74 -2.91 -0.02 2.95 16 22 C 0.01 0.84 5.30 84.66 0.45 1.29 16 23 N -0.91 -53.49 11.31 21.45 0.24 -53.25 16 24 Si 0.96 44.43 29.54 68.60 2.03 46.46 16 25 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 26 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 27 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 28 C 0.13 5.84 5.67 86.51 0.49 6.33 16 29 C 0.13 3.80 5.35 86.37 0.46 4.26 16 30 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.07 0.45 8.14 -2.38 -0.02 0.43 16 32 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.05 0.93 8.10 -2.39 -0.02 0.91 16 34 H 0.05 0.94 8.10 -2.38 -0.02 0.92 16 35 H 0.12 0.74 7.68 -2.39 -0.02 0.72 16 36 H 0.12 0.77 7.95 -2.39 -0.02 0.75 16 37 H 0.12 0.27 5.94 -2.39 -0.01 0.26 16 38 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.12 0.27 8.14 -2.38 -0.02 0.25 16 40 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 41 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.09 1.21 7.31 -2.39 -0.02 1.19 16 43 H 0.11 2.24 5.09 -2.39 -0.01 2.23 16 44 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 45 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 46 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 47 H 0.06 3.24 6.04 -2.39 -0.01 3.22 16 48 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 49 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 50 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 51 H 0.05 2.52 7.04 -2.39 -0.02 2.50 16 52 H 0.07 2.10 7.69 -2.39 -0.02 2.08 16 53 H 0.05 1.97 7.00 -2.39 -0.02 1.95 16 Total: -1.00 -80.87 402.10 3.74 -77.13 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: 0.87 Total: 14.02 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: 5.56 Total: 2.42 kcal Atomic # 7 Polarization: -87.80 SS G_CDS: -4.62 Total: -92.42 kcal Atomic # 8 Polarization: -47.50 SS G_CDS: -0.09 Total: -47.60 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -80.87 3.74 -77.13 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597912285.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.723 kcal (2) G-P(sol) polarization free energy of solvation -80.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds