Wall clock time and date at job start Tue Mar 31 2020 19:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 C 1.50700 * 120.00567 * 2 1 4 4 C 1.50710 * 119.99784 * 180.02562 * 2 1 3 5 5 H 1.09000 * 109.48915 * 122.05851 * 4 2 1 6 6 O 1.42907 * 109.47769 * 2.02929 * 4 2 1 7 7 C 1.42898 * 114.09277 * 178.85810 * 6 4 2 8 8 C 1.53092 * 109.41847 * 61.15875 * 7 6 4 9 9 C 1.53314 * 109.19275 * 302.38795 * 8 7 6 10 10 C 1.53089 * 109.48172 * 242.08477 * 4 2 1 11 11 H 1.09001 * 109.52270 * 297.56361 * 10 4 2 12 12 C 1.50703 * 109.51769 * 57.68525 * 10 4 2 13 13 O 1.21278 * 120.00499 * 34.51997 * 12 10 4 14 14 N 1.34779 * 119.99645 * 214.51225 * 12 10 4 15 15 C 1.46500 * 120.00049 * 179.73154 * 14 12 10 16 16 C 1.53000 * 109.47505 * 180.27429 * 15 14 12 17 17 H 1.09007 * 109.49446 * 54.99969 * 16 15 14 18 18 C 1.53033 * 109.49856 * 175.05841 * 16 15 14 19 19 C 1.53041 * 109.54071 * 181.28587 * 18 16 15 20 20 C 1.53198 * 109.33684 * 298.68790 * 19 18 16 21 21 N 1.46926 * 108.77556 * 54.61543 * 20 19 18 22 22 C 1.36932 * 120.62922 * 126.37224 * 21 20 19 23 23 H 1.08009 * 119.99831 * 326.59071 * 22 21 20 24 24 C 1.38812 * 120.00174 * 146.59348 * 22 21 20 25 25 N 1.31616 * 120.00122 * 342.24802 * 24 22 21 26 26 Si 1.86804 * 119.99814 * 162.24727 * 24 22 21 27 27 H 1.48505 * 109.47059 * 90.00194 * 26 24 22 28 28 H 1.48498 * 109.46948 * 209.99766 * 26 24 22 29 29 H 1.48496 * 109.47410 * 330.00245 * 26 24 22 30 30 C 1.46920 * 118.73814 * 306.39198 * 21 20 19 31 31 H 1.08002 * 120.00577 * 179.97438 * 1 2 3 32 32 H 1.07998 * 119.99758 * 359.97438 * 1 2 3 33 33 H 1.08996 * 109.47484 * 275.39699 * 3 2 1 34 34 H 1.09005 * 109.46722 * 35.39367 * 3 2 1 35 35 H 1.08996 * 109.47322 * 155.39033 * 3 2 1 36 36 H 1.09000 * 109.48315 * 181.14163 * 7 6 4 37 37 H 1.08998 * 109.48216 * 301.17238 * 7 6 4 38 38 H 1.09004 * 109.52084 * 62.29044 * 8 7 6 39 39 H 1.09001 * 109.52473 * 182.42270 * 8 7 6 40 40 H 1.08995 * 109.53256 * 297.12160 * 9 8 7 41 41 H 1.08997 * 109.62486 * 176.81054 * 9 8 7 42 42 H 0.97003 * 120.00290 * 0.02562 * 14 12 10 43 43 H 1.09002 * 109.46770 * 300.27629 * 15 14 12 44 44 H 1.09004 * 109.47556 * 60.26931 * 15 14 12 45 45 H 1.08996 * 109.46578 * 301.34013 * 18 16 15 46 46 H 1.08999 * 109.46037 * 61.29795 * 18 16 15 47 47 H 1.08994 * 109.50056 * 178.72343 * 19 18 16 48 48 H 1.08997 * 109.49964 * 58.65130 * 19 18 16 49 49 H 1.09001 * 109.58619 * 294.82826 * 20 19 18 50 50 H 1.09004 * 109.70305 * 174.47566 * 20 19 18 51 51 H 0.96995 * 120.00150 * 180.02562 * 25 24 22 52 52 H 1.08999 * 109.59203 * 293.81963 * 30 21 20 53 53 H 1.09007 * 109.58727 * 173.39804 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.0634 -1.3052 -0.0006 5 1 2.7176 -1.3471 -0.8715 6 8 1.1356 -2.3910 -0.0488 7 6 1.7488 -3.6814 -0.0794 8 6 2.5766 -3.8819 1.1927 9 6 3.6205 -2.7638 1.2962 10 6 2.9038 -1.4101 1.2747 11 1 3.6410 -0.6074 1.2922 12 6 2.0064 -1.2961 2.4799 13 8 0.8841 -1.7546 2.4460 14 7 2.4510 -0.6847 3.5957 15 6 1.5766 -0.5686 4.7654 16 6 2.3164 0.1674 5.8843 17 1 2.6750 1.1275 5.5130 18 6 1.3647 0.3979 7.0604 19 6 2.0946 1.1623 8.1672 20 6 3.2818 0.3295 8.6609 21 7 4.1263 -0.0187 7.5101 22 6 5.4659 0.2649 7.5167 23 1 5.8285 1.1478 8.0222 24 6 6.3579 -0.5823 6.8736 25 7 5.9946 -1.8092 6.5654 26 14 8.0740 0.0190 6.4456 27 1 8.9958 -0.2718 7.5730 28 1 8.5517 -0.6765 5.2237 29 1 8.0386 1.4831 6.2001 30 6 3.5060 -0.6766 6.3521 31 1 -0.5401 -0.9353 -0.0004 32 1 -0.5400 0.9353 0.0004 33 1 2.1616 1.6680 -1.0230 34 1 1.5197 2.0386 0.5953 35 1 3.0543 1.1525 0.4279 36 1 0.9773 -4.4493 -0.1358 37 1 2.3988 -3.7544 -0.9513 38 1 1.9209 -3.8493 2.0629 39 1 3.0796 -4.8480 1.1515 40 1 4.3067 -2.8266 0.4517 41 1 4.1765 -2.8671 2.2280 42 1 3.3486 -0.3177 3.6229 43 1 0.6799 -0.0112 4.4947 44 1 1.2955 -1.5641 5.1093 45 1 0.5053 0.9777 6.7240 46 1 1.0253 -0.5632 7.4466 47 1 1.4098 1.3459 8.9950 48 1 2.4553 2.1134 7.7756 49 1 2.9170 -0.5815 9.1354 50 1 3.8631 0.9079 9.3791 51 1 6.6180 -2.4013 6.1164 52 1 3.1595 -1.6696 6.6382 53 1 4.2346 -0.7600 5.5456 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600818054.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:56 Heat of formation + Delta-G solvation = -77.760859 kcal Electronic energy + Delta-G solvation = -31408.287397 eV Core-core repulsion = 27472.409226 eV Total energy + Delta-G solvation = -3935.878171 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.68774 -39.81327 -38.86233 -36.20396 -35.99509 -34.86247 -34.60677 -32.52706 -31.71254 -31.22161 -28.13541 -27.35245 -27.01168 -26.08989 -24.83437 -23.88078 -22.77712 -22.10402 -21.01904 -20.32332 -19.54718 -18.69359 -17.85990 -17.52339 -16.92721 -16.83877 -16.59352 -16.26010 -15.85322 -15.69904 -15.56280 -15.17022 -14.82169 -14.59376 -14.54906 -14.43590 -14.13129 -14.06153 -13.85587 -13.78117 -13.68685 -13.29764 -13.20068 -12.92389 -12.85817 -12.61807 -12.54385 -12.31401 -12.25374 -12.16569 -12.01006 -11.80540 -11.58202 -11.56538 -11.41656 -11.24371 -11.07957 -10.63048 -10.55403 -10.38850 -9.94973 -9.78349 -8.59949 -7.86820 -5.37502 1.35275 1.46790 1.49291 1.58851 1.80440 2.30200 2.51767 2.84134 3.25955 3.59410 3.61418 3.73872 3.80125 3.99909 4.01996 4.03686 4.08023 4.12756 4.16268 4.28714 4.34893 4.38430 4.48579 4.54208 4.57641 4.64057 4.70080 4.72304 4.80503 4.80967 4.86807 4.87258 4.89276 4.96177 5.02175 5.03983 5.14672 5.15505 5.23067 5.23924 5.28038 5.36754 5.37805 5.50528 5.57623 5.68509 5.73207 5.74145 5.92988 6.42090 6.45584 6.65492 7.16588 7.39730 7.85361 8.42166 9.18340 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.011532 B = 0.003696 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2427.513960 B = 7573.057696 C = 8600.069282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.147 4.147 3 C -0.112 4.112 4 C 0.145 3.855 5 H 0.093 0.907 6 O -0.378 6.378 7 C 0.065 3.935 8 C -0.158 4.158 9 C -0.110 4.110 10 C -0.133 4.133 11 H 0.114 0.886 12 C 0.519 3.481 13 O -0.553 6.553 14 N -0.725 5.725 15 C 0.144 3.856 16 C -0.109 4.109 17 H 0.072 0.928 18 C -0.099 4.099 19 C -0.120 4.120 20 C 0.136 3.864 21 N -0.609 5.609 22 C -0.272 4.272 23 H 0.060 0.940 24 C -0.036 4.036 25 N -0.928 5.928 26 Si 0.961 3.039 27 H -0.289 1.289 28 H -0.288 1.288 29 H -0.269 1.269 30 C 0.198 3.802 31 H 0.089 0.911 32 H 0.103 0.897 33 H 0.085 0.915 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.095 0.905 37 H 0.071 0.929 38 H 0.043 0.957 39 H 0.089 0.911 40 H 0.104 0.896 41 H 0.060 0.940 42 H 0.403 0.597 43 H 0.067 0.933 44 H 0.041 0.959 45 H 0.078 0.922 46 H 0.051 0.949 47 H 0.082 0.918 48 H 0.058 0.942 49 H 0.006 0.994 50 H 0.051 0.949 51 H 0.251 0.749 52 H -0.016 1.016 53 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.068 3.212 -14.539 16.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.147 4.147 3 C -0.169 4.169 4 C 0.087 3.913 5 H 0.111 0.889 6 O -0.297 6.297 7 C -0.012 4.012 8 C -0.196 4.196 9 C -0.148 4.148 10 C -0.155 4.155 11 H 0.132 0.868 12 C 0.305 3.695 13 O -0.430 6.430 14 N -0.376 5.376 15 C 0.019 3.981 16 C -0.129 4.129 17 H 0.090 0.910 18 C -0.137 4.137 19 C -0.159 4.159 20 C 0.010 3.990 21 N -0.333 5.333 22 C -0.402 4.402 23 H 0.078 0.922 24 C -0.233 4.233 25 N -0.572 5.572 26 Si 0.788 3.212 27 H -0.216 1.216 28 H -0.214 1.214 29 H -0.193 1.193 30 C 0.072 3.928 31 H 0.107 0.893 32 H 0.121 0.879 33 H 0.103 0.897 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.113 0.887 37 H 0.089 0.911 38 H 0.062 0.938 39 H 0.107 0.893 40 H 0.122 0.878 41 H 0.079 0.921 42 H 0.238 0.762 43 H 0.085 0.915 44 H 0.060 0.940 45 H 0.097 0.903 46 H 0.070 0.930 47 H 0.100 0.900 48 H 0.077 0.923 49 H 0.024 0.976 50 H 0.069 0.931 51 H 0.060 0.940 52 H 0.002 0.998 53 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.988 2.786 -14.604 16.877 hybrid contribution 1.621 -0.261 0.449 1.702 sum -6.367 2.525 -14.155 15.725 Atomic orbital electron populations 1.23628 0.95951 1.01502 0.99344 1.21714 0.95830 0.94614 1.02533 1.20819 1.00050 0.92787 1.03210 1.20694 0.89816 0.86036 0.94716 0.88941 1.87977 1.33098 1.14092 1.94502 1.22617 0.97490 0.84874 0.96206 1.22213 0.98181 0.99678 0.99496 1.21585 0.97535 0.91787 1.03913 1.22040 0.98265 1.01471 0.93700 0.86781 1.20698 0.87737 0.76899 0.84131 1.90676 1.21156 1.47849 1.83351 1.46156 1.18318 1.59480 1.13695 1.21133 0.92852 0.99312 0.84769 1.21873 0.96833 0.99356 0.94844 0.91006 1.21353 0.97308 1.00240 0.94821 1.21859 0.97063 0.98484 0.98524 1.21115 0.92277 0.95857 0.89706 1.44262 1.04564 1.70559 1.13886 1.19401 0.83494 1.03829 1.33505 0.92213 1.25840 1.00978 0.94423 1.02062 1.70207 1.36752 1.05564 1.44692 0.85406 0.80288 0.78220 0.77268 1.21550 1.21382 1.19349 1.20428 0.91923 0.90881 0.89581 0.89281 0.87857 0.89668 0.91672 0.91194 0.88701 0.91052 0.93790 0.89262 0.87780 0.92072 0.76153 0.91508 0.94017 0.90302 0.93031 0.89991 0.92311 0.97612 0.93065 0.94038 0.99779 0.92945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.26 13.34 67.79 0.90 -3.36 16 2 C -0.15 -3.38 4.50 -16.48 -0.07 -3.46 16 3 C -0.11 -1.96 9.95 71.24 0.71 -1.25 16 4 C 0.15 3.34 2.62 29.88 0.08 3.42 16 5 H 0.09 1.66 8.14 -2.39 -0.02 1.65 16 6 O -0.38 -10.23 7.36 -129.51 -0.95 -11.19 16 7 C 0.06 1.39 6.84 72.01 0.49 1.88 16 8 C -0.16 -3.79 5.74 30.73 0.18 -3.61 16 9 C -0.11 -2.51 5.53 30.76 0.17 -2.34 16 10 C -0.13 -3.22 2.41 -11.45 -0.03 -3.24 16 11 H 0.11 2.29 6.96 -2.39 -0.02 2.27 16 12 C 0.52 16.36 5.51 87.66 0.48 16.84 16 13 O -0.55 -20.90 13.58 16.44 0.22 -20.68 16 14 N -0.72 -23.05 5.33 -463.05 -2.47 -25.51 16 15 C 0.14 4.79 5.07 86.38 0.44 5.23 16 16 C -0.11 -3.82 2.37 -10.72 -0.03 -3.85 16 17 H 0.07 2.52 8.14 -2.38 -0.02 2.50 16 18 C -0.10 -3.09 5.17 30.62 0.16 -2.93 16 19 C -0.12 -3.85 6.08 30.67 0.19 -3.67 16 20 C 0.14 5.62 6.52 86.36 0.56 6.18 16 21 N -0.61 -29.99 2.96 -699.09 -2.07 -32.05 16 22 C -0.27 -14.60 9.51 84.03 0.80 -13.80 16 23 H 0.06 3.16 7.89 -2.91 -0.02 3.14 16 24 C -0.04 -1.95 4.85 84.86 0.41 -1.54 16 25 N -0.93 -53.01 11.66 21.65 0.25 -52.76 16 26 Si 0.96 42.76 29.59 68.60 2.03 44.79 16 27 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 28 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 29 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 30 C 0.20 9.07 4.37 86.36 0.38 9.45 16 31 H 0.09 2.67 6.85 -2.91 -0.02 2.65 16 32 H 0.10 2.26 8.05 -2.91 -0.02 2.24 16 33 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.06 1.16 8.10 -2.38 -0.02 1.14 16 35 H 0.07 1.12 6.82 -2.39 -0.02 1.10 16 36 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.04 1.39 6.68 -2.38 -0.02 1.37 16 39 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.40 12.42 7.68 -92.71 -0.71 11.71 16 43 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 44 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 46 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 47 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 48 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 49 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 50 H 0.05 2.09 7.93 -2.39 -0.02 2.07 16 51 H 0.25 13.85 8.31 -92.71 -0.77 13.07 16 52 H -0.02 -0.83 8.14 -2.39 -0.02 -0.84 16 53 H 0.05 2.61 5.71 -2.38 -0.01 2.59 16 Total: -1.00 -67.87 403.45 3.00 -64.87 By element: Atomic # 1 Polarization: 32.41 SS G_CDS: 0.16 Total: 32.57 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: 5.82 Total: -0.04 kcal Atomic # 7 Polarization: -106.04 SS G_CDS: -4.28 Total: -110.33 kcal Atomic # 8 Polarization: -31.13 SS G_CDS: -0.73 Total: -31.86 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -67.87 3.00 -64.87 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600818054.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.892 kcal (2) G-P(sol) polarization free energy of solvation -67.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds