Wall clock time and date at job start Tue Mar 31 2020 20:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47465 * 2 1 4 4 C 1.53007 * 109.46887 * 119.99629 * 2 1 3 5 5 N 1.46490 * 109.47172 * 64.03153 * 4 2 1 6 6 C 1.46504 * 120.00400 * 84.22213 * 5 4 2 7 7 C 1.50703 * 109.46847 * 95.49653 * 6 5 4 8 8 H 1.07993 * 119.99993 * 0.02562 * 7 6 5 9 9 C 1.37872 * 119.99615 * 180.02562 * 7 6 5 10 10 N 1.31517 * 120.00535 * 0.02562 * 9 7 6 11 11 Si 1.86805 * 120.00025 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.46989 * 60.00083 * 11 9 7 13 13 H 1.48501 * 109.47072 * 180.02562 * 11 9 7 14 14 H 1.48504 * 109.47086 * 300.00202 * 11 9 7 15 15 C 1.34787 * 119.99822 * 264.22285 * 5 4 2 16 16 O 1.21278 * 119.99725 * 355.42671 * 15 5 4 17 17 C 1.50700 * 119.99906 * 175.42857 * 15 5 4 18 18 H 1.09005 * 109.71002 * 357.55099 * 17 15 5 19 19 C 1.53172 * 109.71167 * 236.95652 * 17 15 5 20 20 C 1.50186 * 110.41349 * 287.16713 * 19 17 15 21 21 O 1.21281 * 118.03216 * 163.64034 * 20 19 17 22 22 N 1.33639 * 123.91876 * 343.65757 * 20 19 17 23 23 C 1.45368 * 123.17924 * 3.82263 * 22 20 19 24 24 H 1.08998 * 108.05518 * 96.20037 * 23 22 20 25 25 C 1.52724 * 111.61329 * 215.85204 * 23 22 20 26 26 C 1.53203 * 108.79446 * 183.35111 * 25 23 22 27 27 C 1.52891 * 109.94608 * 300.60571 * 26 25 23 28 28 C 1.53196 * 109.96725 * 58.93612 * 27 26 25 29 29 C 1.52770 * 108.88032 * 300.57141 * 28 27 26 30 30 H 1.09003 * 109.44287 * 301.33964 * 29 28 27 31 31 H 1.09000 * 109.46897 * 184.00146 * 1 2 3 32 32 H 1.08999 * 109.46907 * 304.00647 * 1 2 3 33 33 H 1.09002 * 109.46735 * 64.00435 * 1 2 3 34 34 H 1.08999 * 109.47249 * 239.99499 * 2 1 3 35 35 H 1.09004 * 109.47756 * 180.02562 * 3 2 1 36 36 H 1.09002 * 109.46628 * 299.99650 * 3 2 1 37 37 H 1.08999 * 109.47296 * 59.99528 * 3 2 1 38 38 H 1.09000 * 109.47132 * 304.02642 * 4 2 1 39 39 H 1.09005 * 109.47143 * 184.03372 * 4 2 1 40 40 H 1.09003 * 109.47184 * 215.49885 * 6 5 4 41 41 H 1.08998 * 109.46777 * 335.49739 * 6 5 4 42 42 H 0.96998 * 120.00559 * 179.97438 * 10 9 7 43 43 H 1.08997 * 109.30940 * 47.49094 * 19 17 15 44 44 H 1.09003 * 109.30621 * 166.88386 * 19 17 15 45 45 H 0.97001 * 118.40682 * 183.79474 * 22 20 19 46 46 H 1.08996 * 109.66887 * 63.52682 * 25 23 22 47 47 H 1.09001 * 109.56442 * 303.11212 * 25 23 22 48 48 H 1.08996 * 109.38774 * 180.46095 * 26 25 23 49 49 H 1.08994 * 109.31530 * 60.70194 * 26 25 23 50 50 H 1.09000 * 109.38870 * 298.77990 * 27 26 25 51 51 H 1.08996 * 109.38881 * 179.08633 * 27 26 25 52 52 H 1.09002 * 109.56842 * 180.75189 * 28 27 26 53 53 H 1.08994 * 109.56639 * 60.38740 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 7 1.6325 -2.1275 1.2019 6 6 2.4410 -3.0999 0.4622 7 6 3.3876 -3.7905 1.4098 8 1 3.3867 -3.5314 2.4582 9 6 4.2547 -4.7532 0.9383 10 7 4.2561 -5.0684 -0.3385 11 14 5.4276 -5.6099 2.1130 12 1 4.6494 -6.3122 3.1649 13 1 6.2480 -6.5945 1.3630 14 1 6.3181 -4.6034 2.7450 15 6 0.5138 -2.5269 1.8388 16 8 -0.1102 -1.7403 2.5192 17 6 0.0383 -3.9507 1.7054 18 1 0.6943 -4.4952 1.0262 19 6 -1.3947 -3.9683 1.1648 20 6 -2.3597 -3.5183 2.2240 21 8 -3.4743 -3.1895 1.8770 22 7 -2.0636 -3.4583 3.5258 23 6 -0.7409 -3.7478 4.0549 24 1 -0.2116 -2.8028 4.1769 25 6 -0.8180 -4.4487 5.4096 26 6 0.6040 -4.6469 5.9444 27 6 1.4176 -5.4905 4.9627 28 6 1.4676 -4.8001 3.5961 29 6 0.0412 -4.6261 3.0776 30 1 -0.4391 -5.6018 3.0025 31 1 -0.3633 -1.0252 0.0717 32 1 -0.3633 0.5748 0.8519 33 1 -0.3633 0.4504 -0.9237 34 1 1.8933 -0.5139 -0.8899 35 1 3.1301 1.4425 -0.0005 36 1 1.6768 1.9562 -0.8901 37 1 1.6767 1.9563 0.8899 38 1 1.6189 -0.2507 2.1378 39 1 3.1276 -0.6590 1.2863 40 1 1.7870 -3.8388 -0.0009 41 1 3.0118 -2.5849 -0.3105 42 1 4.8664 -5.7454 -0.6703 43 1 -1.4642 -3.3008 0.3060 44 1 -1.6494 -4.9809 0.8519 45 1 -2.7651 -3.2091 4.1477 46 1 -1.3029 -5.4180 5.2941 47 1 -1.3878 -3.8342 6.1066 48 1 0.5606 -5.1542 6.9082 49 1 1.0813 -3.6748 6.0682 50 1 0.9527 -6.4707 4.8562 51 1 2.4314 -5.6121 5.3440 52 1 2.0376 -5.4132 2.8980 53 1 1.9408 -3.8235 3.6976 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000824234185.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:33 Heat of formation + Delta-G solvation = -115.221253 kcal Electronic energy + Delta-G solvation = -32987.035666 eV Core-core repulsion = 29049.533090 eV Total energy + Delta-G solvation = -3937.502576 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.39701 -40.27392 -39.08445 -37.38300 -35.90001 -35.39218 -34.52949 -33.99933 -30.88227 -30.08272 -29.30615 -28.10450 -27.63890 -25.32116 -24.82409 -23.61264 -23.27074 -21.59400 -20.97791 -20.67241 -19.25338 -18.47232 -17.98585 -17.83695 -17.39477 -16.87054 -16.43040 -16.30859 -15.99708 -15.68084 -15.22946 -15.15849 -15.04828 -14.89356 -14.42513 -14.30242 -14.05488 -13.76394 -13.69298 -13.51526 -13.38941 -13.17958 -13.02780 -12.84585 -12.74745 -12.70119 -12.66277 -12.46143 -12.33580 -12.24778 -12.06148 -11.92742 -11.83459 -11.61314 -11.54330 -11.30680 -11.18756 -11.09544 -10.62342 -10.58015 -10.32595 -9.86466 -9.25650 -8.10495 -6.21427 1.46365 1.49340 1.54087 1.65742 1.82667 2.31658 2.41794 2.52394 3.21203 3.42965 3.58041 3.71241 3.73943 3.87178 3.97953 4.05200 4.14842 4.20381 4.21292 4.32849 4.40878 4.49463 4.53990 4.58616 4.62003 4.67153 4.69658 4.75241 4.77072 4.82257 4.89010 4.95807 4.99258 5.00952 5.05769 5.06490 5.19648 5.23843 5.26168 5.29409 5.34913 5.38186 5.38565 5.44840 5.52929 5.63607 5.77969 5.92679 5.95266 6.16680 6.41933 6.67270 6.93341 7.26667 7.41331 7.52578 8.94912 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.008066 B = 0.006840 C = 0.004434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3470.594975 B = 4092.826439 C = 6313.694399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.107 4.107 3 C -0.135 4.135 4 C 0.121 3.879 5 N -0.594 5.594 6 C 0.252 3.748 7 C -0.524 4.524 8 H 0.064 0.936 9 C 0.029 3.971 10 N -0.922 5.922 11 Si 0.935 3.065 12 H -0.257 1.257 13 H -0.292 1.292 14 H -0.279 1.279 15 C 0.525 3.475 16 O -0.574 6.574 17 C -0.112 4.112 18 H 0.108 0.892 19 C -0.117 4.117 20 C 0.531 3.469 21 O -0.614 6.614 22 N -0.687 5.687 23 C 0.138 3.862 24 H 0.071 0.929 25 C -0.117 4.117 26 C -0.109 4.109 27 C -0.120 4.120 28 C -0.103 4.103 29 C -0.072 4.072 30 H 0.098 0.902 31 H 0.027 0.973 32 H 0.046 0.954 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.057 0.943 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.028 0.972 41 H 0.016 0.984 42 H 0.264 0.736 43 H 0.088 0.912 44 H 0.130 0.870 45 H 0.399 0.601 46 H 0.080 0.920 47 H 0.080 0.920 48 H 0.087 0.913 49 H 0.053 0.947 50 H 0.074 0.926 51 H 0.060 0.940 52 H 0.067 0.933 53 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.083 1.123 8.018 9.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.127 4.127 3 C -0.192 4.192 4 C -0.002 4.002 5 N -0.323 5.323 6 C 0.131 3.869 7 C -0.562 4.562 8 H 0.083 0.917 9 C -0.171 4.171 10 N -0.562 5.562 11 Si 0.762 3.238 12 H -0.181 1.181 13 H -0.218 1.218 14 H -0.205 1.205 15 C 0.314 3.686 16 O -0.456 6.456 17 C -0.133 4.133 18 H 0.126 0.874 19 C -0.157 4.157 20 C 0.320 3.680 21 O -0.498 6.498 22 N -0.335 5.335 23 C 0.033 3.967 24 H 0.088 0.912 25 C -0.155 4.155 26 C -0.147 4.147 27 C -0.157 4.157 28 C -0.141 4.141 29 C -0.091 4.091 30 H 0.116 0.884 31 H 0.046 0.954 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.046 0.954 41 H 0.034 0.966 42 H 0.073 0.927 43 H 0.106 0.894 44 H 0.148 0.852 45 H 0.235 0.765 46 H 0.098 0.902 47 H 0.098 0.902 48 H 0.106 0.894 49 H 0.072 0.928 50 H 0.093 0.907 51 H 0.079 0.921 52 H 0.086 0.914 53 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.661 1.529 7.913 9.848 hybrid contribution 0.879 -0.324 0.143 0.948 sum -4.781 1.205 8.056 9.445 Atomic orbital electron populations 1.21639 0.95320 1.00264 1.01166 1.21449 0.95907 0.97408 0.97905 1.21694 1.01228 0.93904 1.02399 1.21444 0.99317 0.81148 0.98280 1.48162 1.24161 1.09159 1.50841 1.19103 0.89701 0.86771 0.91323 1.21645 1.19064 1.20202 0.95322 0.91750 1.25458 0.98268 0.97458 0.95964 1.70003 1.38850 1.32919 1.14433 0.85948 0.79569 0.78520 0.79799 1.18096 1.21844 1.20497 1.20398 0.80056 0.89730 0.78398 1.90569 1.57562 1.56167 1.41298 1.21502 0.96631 0.94490 1.00653 0.87354 1.21549 0.91750 1.05393 0.96983 1.20166 0.87553 0.75985 0.84335 1.90671 1.25028 1.52575 1.81503 1.45191 1.13442 1.67995 1.06865 1.21101 0.82426 0.98992 0.94161 0.91162 1.21803 0.98280 1.01291 0.94169 1.21461 0.94099 1.00171 0.99013 1.21598 1.00412 0.99434 0.94298 1.21591 0.94284 1.00889 0.97368 1.21180 0.97560 0.98825 0.91571 0.88431 0.95380 0.93452 0.92039 0.92075 0.92045 0.91430 0.92344 0.91208 0.91252 0.95436 0.96599 0.92726 0.89355 0.85202 0.76474 0.90181 0.90186 0.89447 0.92818 0.90690 0.92112 0.91394 0.93485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.01 8.48 71.98 0.61 -3.40 16 2 C -0.11 -3.28 3.13 -10.79 -0.03 -3.31 16 3 C -0.13 -3.24 9.19 71.98 0.66 -2.58 16 4 C 0.12 4.24 4.96 86.38 0.43 4.67 16 5 N -0.59 -22.94 2.24 -826.13 -1.85 -24.79 16 6 C 0.25 11.03 4.83 85.63 0.41 11.44 16 7 C -0.52 -24.18 7.42 25.60 0.19 -23.99 16 8 H 0.06 2.98 5.96 -2.91 -0.02 2.96 16 9 C 0.03 1.38 5.46 84.65 0.46 1.84 16 10 N -0.92 -47.87 13.29 21.45 0.28 -47.59 16 11 Si 0.94 38.64 29.54 68.60 2.03 40.67 16 12 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 13 H -0.29 -12.29 7.11 99.48 0.71 -11.58 16 14 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 15 C 0.52 19.64 3.89 87.66 0.34 19.98 16 16 O -0.57 -22.91 11.60 -3.02 -0.04 -22.95 16 17 C -0.11 -3.73 2.30 -11.50 -0.03 -3.75 16 18 H 0.11 3.96 5.39 -2.38 -0.01 3.95 16 19 C -0.12 -3.69 5.43 29.74 0.16 -3.53 16 20 C 0.53 18.36 6.82 87.67 0.60 18.96 16 21 O -0.61 -25.38 17.78 -3.03 -0.05 -25.43 16 22 N -0.69 -20.17 4.90 -447.47 -2.19 -22.37 16 23 C 0.14 3.77 2.01 45.08 0.09 3.86 16 24 H 0.07 2.36 5.75 -2.39 -0.01 2.34 16 25 C -0.12 -2.36 5.60 30.57 0.17 -2.19 16 26 C -0.11 -2.21 5.90 30.63 0.18 -2.03 16 27 C -0.12 -2.86 5.90 30.62 0.18 -2.68 16 28 C -0.10 -3.19 3.93 30.58 0.12 -3.07 16 29 C -0.07 -2.08 1.71 -10.92 -0.02 -2.10 16 30 H 0.10 2.48 8.11 -2.39 -0.02 2.46 16 31 H 0.03 1.00 6.28 -2.39 -0.01 0.99 16 32 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 36 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.07 2.50 7.21 -2.39 -0.02 2.49 16 39 H 0.07 2.44 8.11 -2.38 -0.02 2.42 16 40 H 0.03 1.27 6.01 -2.39 -0.01 1.26 16 41 H 0.02 0.76 8.03 -2.39 -0.02 0.74 16 42 H 0.26 13.26 8.31 -92.71 -0.77 12.49 16 43 H 0.09 2.95 8.08 -2.39 -0.02 2.93 16 44 H 0.13 3.38 8.14 -2.39 -0.02 3.36 16 45 H 0.40 10.58 8.71 -92.71 -0.81 9.78 16 46 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 47 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 48 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 49 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 50 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 51 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 52 H 0.07 2.41 7.14 -2.39 -0.02 2.39 16 53 H 0.05 1.68 6.19 -2.39 -0.01 1.66 16 Total: -1.00 -58.99 392.75 2.80 -56.18 By element: Atomic # 1 Polarization: 38.08 SS G_CDS: 0.09 Total: 38.17 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: 4.53 Total: 8.10 kcal Atomic # 7 Polarization: -90.99 SS G_CDS: -3.76 Total: -94.74 kcal Atomic # 8 Polarization: -48.29 SS G_CDS: -0.09 Total: -48.38 kcal Atomic # 14 Polarization: 38.64 SS G_CDS: 2.03 Total: 40.67 kcal Total: -58.99 2.80 -56.18 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824234185.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.040 kcal (2) G-P(sol) polarization free energy of solvation -58.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds