Wall clock time and date at job start Tue Mar 31 2020 20:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47370 * 2 1 4 4 C 1.52999 * 109.46889 * 120.00140 * 2 1 3 5 5 N 1.46905 * 109.47408 * 66.16108 * 4 2 1 6 6 C 1.46897 * 111.00225 * 208.42721 * 5 4 2 7 7 C 1.50693 * 109.47058 * 72.09042 * 6 5 4 8 8 H 1.08005 * 120.00416 * 5.03273 * 7 6 5 9 9 C 1.37879 * 119.99926 * 185.03421 * 7 6 5 10 10 N 1.31506 * 119.99898 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99989 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.47219 * 59.99918 * 11 9 7 13 13 H 1.48496 * 109.46973 * 180.02562 * 11 9 7 14 14 H 1.48511 * 109.47142 * 299.99986 * 11 9 7 15 15 C 1.46900 * 110.99879 * 84.47144 * 5 4 2 16 16 N 1.46502 * 109.47131 * 279.16819 * 15 5 4 17 17 C 1.36140 * 132.36561 * 286.47026 * 16 15 5 18 18 O 1.21280 * 134.46396 * 359.97438 * 17 16 15 19 19 C 1.50326 * 91.07736 * 179.97438 * 17 16 15 20 20 C 1.54095 * 115.54235 * 242.53749 * 19 17 16 21 21 C 1.55013 * 101.80448 * 265.54447 * 20 19 17 22 22 C 1.54172 * 104.38542 * 340.37626 * 21 20 19 23 23 O 1.43051 * 116.32657 * 118.37988 * 19 17 16 24 24 C 1.47641 * 132.36856 * 106.42296 * 16 15 5 25 25 H 1.09000 * 113.79819 * 294.30129 * 24 16 15 26 26 C 1.53000 * 113.89924 * 65.75946 * 24 16 15 27 27 C 1.53005 * 117.50011 * 229.72772 * 26 24 16 28 28 C 1.53000 * 117.50130 * 161.06782 * 26 24 16 29 29 H 1.09001 * 109.47459 * 184.35556 * 1 2 3 30 30 H 1.08997 * 109.47165 * 304.35923 * 1 2 3 31 31 H 1.09004 * 109.46769 * 64.35432 * 1 2 3 32 32 H 1.09000 * 109.46738 * 239.99796 * 2 1 3 33 33 H 1.09001 * 109.46877 * 179.97438 * 3 2 1 34 34 H 1.08994 * 109.47188 * 300.00401 * 3 2 1 35 35 H 1.08999 * 109.46907 * 59.99888 * 3 2 1 36 36 H 1.09001 * 109.47561 * 306.16303 * 4 2 1 37 37 H 1.08996 * 109.47330 * 186.15828 * 4 2 1 38 38 H 1.09003 * 109.46824 * 192.08600 * 6 5 4 39 39 H 1.08991 * 109.46972 * 312.08673 * 6 5 4 40 40 H 0.97004 * 119.99751 * 180.02562 * 10 9 7 41 41 H 1.08996 * 109.47559 * 159.16747 * 15 5 4 42 42 H 1.08999 * 109.47157 * 39.16441 * 15 5 4 43 43 H 1.09003 * 110.93139 * 147.45472 * 20 19 17 44 44 H 1.09002 * 111.05638 * 23.68940 * 20 19 17 45 45 H 1.09004 * 110.47228 * 221.61527 * 21 20 19 46 46 H 1.09005 * 110.47291 * 99.13984 * 21 20 19 47 47 H 1.08998 * 109.85756 * 117.63793 * 22 21 20 48 48 H 1.09001 * 109.85554 * 238.70668 * 22 21 20 49 49 H 1.09003 * 115.55313 * 15.39978 * 26 24 16 50 50 H 1.08996 * 117.49703 * 0.02562 * 27 26 24 51 51 H 1.09000 * 117.50011 * 145.01940 * 27 26 24 52 52 H 1.08992 * 117.50551 * 214.97830 * 28 26 24 53 53 H 1.09007 * 117.49508 * 359.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 7 1.6754 -2.1426 1.1772 6 6 1.5139 -2.7134 2.5211 7 6 0.2472 -2.1845 3.1426 8 1 -0.4171 -1.5582 2.5654 9 6 -0.0640 -2.4999 4.4483 10 7 0.7449 -3.2620 5.1513 11 14 -1.6340 -1.8437 5.2190 12 1 -2.8053 -2.3267 4.4443 13 1 -1.7352 -2.3231 6.6208 14 1 -1.6093 -0.3588 5.2048 15 6 2.6637 -2.9007 0.3985 16 7 2.3954 -2.7280 -1.0314 17 6 1.4261 -3.2229 -1.8492 18 8 0.4739 -3.9572 -1.6906 19 6 2.0089 -2.4944 -3.0280 20 6 1.0943 -1.4352 -3.6730 21 6 0.4266 -2.2450 -4.8137 22 6 1.3591 -3.4551 -5.0210 23 8 2.4666 -3.3068 -4.1128 24 6 3.0815 -1.9559 -2.0863 25 1 3.0374 -0.8765 -1.9406 26 6 4.4911 -2.4584 -2.4048 27 6 5.6189 -1.4250 -2.4380 28 6 5.1050 -2.0398 -3.7422 29 1 -0.3634 -1.0247 0.0780 30 1 -0.3633 0.5800 0.8483 31 1 -0.3633 0.4448 -0.9265 32 1 1.8933 -0.5139 -0.8900 33 1 3.1301 1.4424 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.5893 -0.2752 2.1358 37 1 3.1243 -0.6268 1.3061 38 1 1.4577 -3.7997 2.4500 39 1 2.3666 -2.4334 3.1396 40 1 0.5258 -3.4842 6.0698 41 1 2.5958 -3.9577 0.6557 42 1 3.6646 -2.5347 0.6270 43 1 1.6795 -0.6075 -4.0737 44 1 0.3496 -1.0760 -2.9627 45 1 0.3701 -1.6470 -5.7233 46 1 -0.5677 -2.5768 -4.5143 47 1 0.8221 -4.3781 -4.8023 48 1 1.7225 -3.4708 -6.0485 49 1 4.7312 -3.4536 -2.0304 50 1 5.3567 -0.3872 -2.2325 51 1 6.6010 -1.7403 -2.0857 52 1 5.7493 -2.7593 -4.2475 53 1 4.5044 -1.4067 -4.3955 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839967707.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:01 Heat of formation + Delta-G solvation = -27.796378 kcal Electronic energy + Delta-G solvation = -32160.272660 eV Core-core repulsion = 28226.561112 eV Total energy + Delta-G solvation = -3933.711548 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.62602 -39.47548 -38.68960 -38.27349 -36.53657 -35.66772 -34.47204 -33.14537 -31.07600 -29.04163 -27.89316 -27.75047 -26.68801 -26.00822 -23.76131 -23.14771 -22.79104 -22.33538 -21.64077 -20.91456 -19.49839 -18.59897 -18.53418 -17.85370 -17.10582 -16.80531 -16.64901 -16.36961 -16.19403 -15.81861 -15.71891 -15.17831 -15.07549 -14.87108 -14.60269 -14.35840 -14.24049 -13.81156 -13.70324 -13.41175 -13.24460 -13.11124 -12.92550 -12.89149 -12.78495 -12.70560 -12.57912 -12.46544 -12.24581 -12.23161 -12.13420 -11.98774 -11.74626 -11.53665 -11.43727 -11.33817 -11.16187 -11.14085 -10.85607 -10.63547 -10.29051 -9.93879 -9.05919 -8.21668 -6.31084 1.28926 1.36296 1.39695 1.47273 1.78100 2.37528 2.57662 2.84584 2.95838 3.10102 3.31010 3.43856 3.58636 3.78385 3.91868 3.95539 4.01533 4.08929 4.15119 4.17587 4.23876 4.32370 4.35268 4.38314 4.42177 4.63057 4.65330 4.73001 4.80333 4.84216 4.89381 4.92011 4.92267 4.94109 5.03589 5.07479 5.10666 5.13463 5.17873 5.18840 5.20577 5.26861 5.33727 5.40507 5.52084 5.56619 5.59739 5.63255 5.69076 5.79407 6.05195 6.35109 6.56653 6.83829 7.14688 7.38044 8.88128 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.013947 B = 0.003770 C = 0.003625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.056007 B = 7425.827817 C = 7721.325498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.092 4.092 3 C -0.139 4.139 4 C 0.071 3.929 5 N -0.554 5.554 6 C 0.218 3.782 7 C -0.514 4.514 8 H 0.058 0.942 9 C 0.005 3.995 10 N -0.933 5.933 11 Si 0.963 3.037 12 H -0.276 1.276 13 H -0.281 1.281 14 H -0.264 1.264 15 C 0.295 3.705 16 N -0.610 5.610 17 C 0.503 3.497 18 O -0.546 6.546 19 C 0.067 3.933 20 C -0.125 4.125 21 C -0.148 4.148 22 C 0.036 3.964 23 O -0.338 6.338 24 C 0.184 3.816 25 H 0.132 0.868 26 C -0.174 4.174 27 C -0.167 4.167 28 C -0.135 4.135 29 H 0.027 0.973 30 H 0.037 0.963 31 H 0.064 0.936 32 H 0.082 0.918 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.044 0.956 36 H 0.051 0.949 37 H 0.036 0.964 38 H -0.009 1.009 39 H -0.022 1.022 40 H 0.264 0.736 41 H 0.054 0.946 42 H 0.076 0.924 43 H 0.127 0.873 44 H 0.078 0.922 45 H 0.116 0.884 46 H 0.064 0.936 47 H 0.042 0.958 48 H 0.120 0.880 49 H 0.089 0.911 50 H 0.110 0.890 51 H 0.099 0.901 52 H 0.098 0.902 53 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.962 10.060 -23.488 27.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.110 4.110 3 C -0.197 4.197 4 C -0.057 4.057 5 N -0.280 5.280 6 C 0.092 3.908 7 C -0.553 4.553 8 H 0.076 0.924 9 C -0.193 4.193 10 N -0.574 5.574 11 Si 0.788 3.212 12 H -0.201 1.201 13 H -0.206 1.206 14 H -0.189 1.189 15 C 0.084 3.916 16 N -0.348 5.348 17 C 0.289 3.711 18 O -0.422 6.422 19 C 0.023 3.977 20 C -0.163 4.163 21 C -0.186 4.186 22 C -0.040 4.040 23 O -0.256 6.256 24 C 0.083 3.917 25 H 0.149 0.851 26 C -0.194 4.194 27 C -0.204 4.204 28 C -0.173 4.173 29 H 0.047 0.953 30 H 0.056 0.944 31 H 0.083 0.917 32 H 0.100 0.900 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.054 0.946 38 H 0.009 0.991 39 H -0.004 1.004 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.094 0.906 43 H 0.145 0.855 44 H 0.096 0.904 45 H 0.134 0.866 46 H 0.083 0.917 47 H 0.061 0.939 48 H 0.138 0.862 49 H 0.108 0.892 50 H 0.128 0.872 51 H 0.117 0.883 52 H 0.116 0.884 53 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 8.275 9.401 -23.282 26.436 hybrid contribution -0.542 -0.740 2.006 2.205 sum 7.732 8.661 -21.276 24.238 Atomic orbital electron populations 1.21605 0.96160 1.00303 1.00534 1.21327 0.95652 0.96427 0.97615 1.21793 1.01287 0.94333 1.02294 1.22150 0.97059 0.87533 0.98908 1.61629 1.46523 1.03274 1.16623 1.19268 0.95310 0.92914 0.83344 1.21343 1.06431 1.30754 0.96749 0.92365 1.25824 1.00312 0.95524 0.97656 1.70062 1.38866 1.38254 1.10192 0.85536 0.79406 0.79111 0.77179 1.20123 1.20609 1.18901 1.21711 0.93749 0.97158 0.78997 1.51357 1.28396 1.48017 1.06993 1.23336 0.80711 0.79184 0.87825 1.90660 1.29386 1.38552 1.83556 1.23841 0.94354 0.91521 0.88010 1.22901 0.98359 0.97456 0.97599 1.22958 0.99008 0.96478 1.00138 1.23513 0.87545 0.97908 0.95044 1.88765 1.34371 1.70922 1.31498 1.22267 0.91302 0.97243 0.80919 0.85103 1.22082 0.91800 0.99908 1.05562 1.23189 0.97460 0.98211 1.01551 1.22852 1.01873 1.02821 0.89727 0.95348 0.94421 0.91749 0.89994 0.91639 0.90583 0.93645 0.93034 0.94619 0.99057 1.00450 0.92714 0.92769 0.90643 0.85514 0.90377 0.86551 0.91719 0.93918 0.86193 0.89243 0.87204 0.88260 0.88352 0.87296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.22 9.14 71.98 0.66 -3.56 16 2 C -0.09 -2.62 2.97 -10.79 -0.03 -2.66 16 3 C -0.14 -2.95 9.19 71.98 0.66 -2.28 16 4 C 0.07 2.64 4.25 86.30 0.37 3.01 16 5 N -0.55 -24.38 3.88 -913.19 -3.55 -27.93 16 6 C 0.22 11.90 4.67 85.56 0.40 12.30 16 7 C -0.51 -30.02 8.31 25.60 0.21 -29.81 16 8 H 0.06 3.40 7.81 -2.91 -0.02 3.38 16 9 C 0.00 0.28 5.46 84.66 0.46 0.75 16 10 N -0.93 -57.21 13.29 21.45 0.28 -56.93 16 11 Si 0.96 45.86 29.54 68.60 2.03 47.88 16 12 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 13 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 14 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 15 C 0.29 11.16 6.57 170.81 1.12 12.28 16 16 N -0.61 -19.77 2.34 -850.90 -1.99 -21.77 16 17 C 0.50 18.35 9.12 87.27 0.80 19.15 16 18 O -0.55 -25.57 18.03 -3.03 -0.05 -25.62 16 19 C 0.07 1.63 1.24 -11.38 -0.01 1.61 16 20 C -0.13 -2.20 6.45 31.65 0.20 -2.00 16 21 C -0.15 -2.33 7.02 31.68 0.22 -2.11 16 22 C 0.04 0.66 7.72 72.38 0.56 1.22 16 23 O -0.34 -7.79 9.70 -148.98 -1.45 -9.23 16 24 C 0.18 4.10 3.46 44.57 0.15 4.25 16 25 H 0.13 2.36 5.98 -2.39 -0.01 2.35 16 26 C -0.17 -3.37 5.29 -10.79 -0.06 -3.43 16 27 C -0.17 -2.27 10.22 30.62 0.31 -1.96 16 28 C -0.14 -1.86 9.33 30.62 0.29 -1.57 16 29 H 0.03 1.16 7.68 -2.39 -0.02 1.14 16 30 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.08 2.13 3.35 -2.39 -0.01 2.12 16 33 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.05 2.23 7.06 -2.39 -0.02 2.22 16 37 H 0.04 1.20 7.49 -2.39 -0.02 1.18 16 38 H -0.01 -0.52 7.64 -2.39 -0.02 -0.54 16 39 H -0.02 -1.28 8.05 -2.39 -0.02 -1.30 16 40 H 0.26 15.28 8.31 -92.70 -0.77 14.51 16 41 H 0.05 2.31 7.55 -2.39 -0.02 2.29 16 42 H 0.08 2.49 7.52 -2.39 -0.02 2.47 16 43 H 0.13 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.08 1.62 8.05 -2.39 -0.02 1.60 16 45 H 0.12 1.02 8.14 -2.38 -0.02 1.00 16 46 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 47 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 48 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 49 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 50 H 0.11 1.21 8.13 -2.39 -0.02 1.19 16 51 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 52 H 0.10 1.29 8.14 -2.39 -0.02 1.28 16 53 H 0.11 1.23 8.14 -2.38 -0.02 1.21 16 Total: -1.00 -76.06 417.12 2.45 -73.61 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: 0.87 Total: 14.79 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: 6.31 Total: 5.19 kcal Atomic # 7 Polarization: -101.37 SS G_CDS: -5.26 Total: -106.62 kcal Atomic # 8 Polarization: -33.35 SS G_CDS: -1.50 Total: -34.85 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.88 kcal Total: -76.06 2.45 -73.61 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839967707.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.814 kcal (2) G-P(sol) polarization free energy of solvation -76.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds