Wall clock time and date at job start Tue Mar 31 2020 20:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47312 * 2 1 4 4 C 1.53007 * 109.47321 * 179.97438 * 3 2 1 5 5 H 1.09006 * 109.46496 * 304.99979 * 4 3 2 6 6 O 1.42902 * 109.46822 * 64.99373 * 4 3 2 7 7 C 1.52994 * 109.47263 * 185.00089 * 4 3 2 8 8 H 1.09008 * 109.46720 * 299.27046 * 7 4 3 9 9 C 1.52992 * 109.47346 * 179.27344 * 7 4 3 10 10 O 1.42901 * 109.47053 * 304.51865 * 9 7 4 11 11 N 1.46896 * 109.47581 * 59.26369 * 7 4 3 12 12 C 1.46891 * 111.00399 * 205.00155 * 11 7 4 13 13 C 1.50702 * 109.47285 * 180.02562 * 12 11 7 14 14 C 1.38288 * 119.92388 * 269.73080 * 13 12 11 15 15 C 1.38106 * 120.07024 * 179.72455 * 14 13 12 16 16 C 1.38909 * 119.92718 * 0.54547 * 15 14 13 17 17 N 1.39679 * 120.07311 * 179.75076 * 16 15 14 18 18 C 1.46501 * 119.99416 * 179.97438 * 17 16 15 19 19 C 1.46499 * 120.00049 * 359.97438 * 17 16 15 20 20 C 1.50697 * 109.46930 * 90.00236 * 19 17 16 21 21 H 1.08000 * 120.00112 * 359.97438 * 20 19 17 22 22 C 1.37882 * 119.99530 * 179.97438 * 20 19 17 23 23 N 1.31512 * 120.00200 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99885 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47170 * 59.99779 * 24 22 20 26 26 H 1.48491 * 109.47542 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.47143 * 300.00392 * 24 22 20 28 28 C 1.38907 * 119.84938 * 359.72354 * 16 15 14 29 29 C 1.38100 * 119.92675 * 0.02562 * 28 16 15 30 30 H 1.08998 * 109.47381 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46993 * 300.00576 * 1 2 3 32 32 H 1.08999 * 109.46997 * 59.99993 * 1 2 3 33 33 H 1.08998 * 109.47521 * 239.99059 * 2 1 3 34 34 H 1.09006 * 109.46714 * 119.99773 * 2 1 3 35 35 H 1.09000 * 109.47144 * 59.99935 * 3 2 1 36 36 H 1.09001 * 109.46610 * 299.99373 * 3 2 1 37 37 H 0.96694 * 113.99564 * 64.68100 * 6 4 3 38 38 H 1.09005 * 109.47249 * 64.51503 * 9 7 4 39 39 H 1.08998 * 109.47678 * 184.51813 * 9 7 4 40 40 H 0.96699 * 114.01028 * 179.97438 * 10 9 7 41 41 H 1.00910 * 110.99428 * 81.04428 * 11 7 4 42 42 H 1.09003 * 109.47196 * 300.00094 * 12 11 7 43 43 H 1.08995 * 109.47361 * 60.00554 * 12 11 7 44 44 H 1.07995 * 119.96366 * 359.97370 * 14 13 12 45 45 H 1.08005 * 120.03510 * 180.26661 * 15 14 13 46 46 H 1.08999 * 109.46919 * 90.00354 * 18 17 16 47 47 H 1.09004 * 109.46699 * 209.99618 * 18 17 16 48 48 H 1.08995 * 109.47723 * 329.99623 * 18 17 16 49 49 H 1.08998 * 109.46934 * 210.00360 * 19 17 16 50 50 H 1.09004 * 109.47069 * 329.99909 * 19 17 16 51 51 H 0.96996 * 119.99774 * 179.97438 * 23 22 20 52 52 H 1.07999 * 120.03835 * 179.97438 * 28 16 15 53 53 H 1.08000 * 119.96209 * 179.97438 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 1 3.9330 0.8531 0.8428 6 8 4.0469 0.8728 -1.2201 7 6 4.0800 2.8794 0.1264 8 1 3.7277 3.4655 -0.7225 9 6 5.6099 2.8779 0.1453 10 8 6.0724 2.0247 1.1941 11 7 3.5755 3.4709 1.3727 12 6 3.5154 4.9353 1.2741 13 6 2.9950 5.5051 2.5685 14 6 1.6364 5.6970 2.7409 15 6 1.1557 6.2137 3.9280 16 6 2.0395 6.5513 4.9452 17 7 1.5570 7.0790 6.1451 18 6 2.4906 7.4339 7.2169 19 6 0.1176 7.2775 6.3318 20 6 -0.4879 6.0329 6.9280 21 1 0.1369 5.1793 7.1457 22 6 -1.8396 5.9841 7.1956 23 7 -2.6004 7.0237 6.9309 24 14 -2.5904 4.4412 7.9340 25 1 -1.9545 4.1605 9.2463 26 1 -4.0494 4.6424 8.1233 27 1 -2.3640 3.2938 7.0188 28 6 3.4040 6.3624 4.7665 29 6 3.8776 5.8405 3.5789 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5140 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5140 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9562 -0.8901 37 1 3.8221 1.3864 -2.0079 38 1 5.9847 2.5137 -0.8113 39 1 5.9722 3.8917 0.3152 40 1 7.0355 1.9749 1.2650 41 1 4.1356 3.1842 2.1617 42 1 4.5137 5.3276 1.0801 43 1 2.8494 5.2175 0.4587 44 1 0.9503 5.4388 1.9479 45 1 0.0942 6.3594 4.0637 46 1 2.8030 8.4713 7.0978 47 1 1.9992 7.3110 8.1821 48 1 3.3638 6.7835 7.1684 49 1 -0.0490 8.1200 7.0029 50 1 -0.3488 7.4828 5.3682 51 1 -3.5513 6.9891 7.1188 52 1 4.0938 6.6242 5.5551 53 1 4.9384 5.6937 3.4392 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842226195.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:35 Heat of formation + Delta-G solvation = -105.376288 kcal Electronic energy + Delta-G solvation = -29425.463391 eV Core-core repulsion = 25488.387726 eV Total energy + Delta-G solvation = -3937.075666 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.53579 -39.85736 -37.72689 -37.29720 -35.79363 -34.94442 -34.70186 -32.07310 -31.87260 -29.89086 -29.52469 -28.61356 -26.92301 -25.59321 -24.63678 -23.48075 -22.99627 -22.00946 -21.66864 -21.00315 -18.63683 -18.50140 -18.08753 -17.28763 -16.92104 -16.86162 -16.63727 -16.29398 -15.89757 -15.62725 -15.41073 -15.25986 -14.96051 -14.77475 -14.56949 -14.32007 -14.27511 -14.11564 -13.99932 -13.38482 -13.22507 -13.18393 -13.10383 -12.96844 -12.76667 -12.68422 -12.65859 -12.53122 -12.48161 -12.25533 -12.06902 -11.86187 -11.75659 -11.49987 -11.43189 -11.40491 -10.90568 -10.69360 -10.64160 -10.40092 -9.64974 -9.17196 -8.36207 -7.79603 -6.37701 0.72949 0.85343 1.36629 1.38847 1.46909 2.34110 2.64029 2.95155 3.05885 3.29235 3.55886 3.66188 3.92285 4.03483 4.07711 4.16324 4.18419 4.23764 4.34682 4.36601 4.42172 4.44722 4.48532 4.60444 4.66802 4.72856 4.73831 4.76214 4.81032 4.87570 4.89309 4.93351 5.02311 5.06104 5.09838 5.13902 5.19363 5.21227 5.32139 5.34178 5.49853 5.58859 5.59993 5.67420 5.70718 5.95001 6.07145 6.16030 6.25606 6.50100 6.50511 6.82664 6.90055 6.94626 6.96715 7.34166 8.82812 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.010106 B = 0.002857 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2770.026601 B = 9799.711440 C =11797.595010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C -0.137 4.137 4 C 0.132 3.868 5 H 0.079 0.921 6 O -0.570 6.570 7 C 0.061 3.939 8 H 0.103 0.897 9 C 0.052 3.948 10 O -0.586 6.586 11 N -0.680 5.680 12 C 0.123 3.877 13 C -0.158 4.158 14 C -0.054 4.054 15 C -0.218 4.218 16 C 0.212 3.788 17 N -0.633 5.633 18 C 0.098 3.902 19 C 0.267 3.733 20 C -0.543 4.543 21 H 0.048 0.952 22 C 0.014 3.986 23 N -0.926 5.926 24 Si 0.960 3.040 25 H -0.268 1.268 26 H -0.277 1.277 27 H -0.274 1.274 28 C -0.218 4.218 29 C -0.061 4.061 30 H 0.056 0.944 31 H 0.043 0.957 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.046 0.954 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.384 0.616 38 H 0.061 0.939 39 H 0.051 0.949 40 H 0.394 0.606 41 H 0.347 0.653 42 H 0.047 0.953 43 H 0.079 0.921 44 H 0.122 0.878 45 H 0.093 0.907 46 H 0.053 0.947 47 H 0.055 0.945 48 H 0.078 0.922 49 H 0.009 0.991 50 H 0.011 0.989 51 H 0.268 0.732 52 H 0.131 0.869 53 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.593 -7.723 -17.039 25.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C -0.175 4.175 4 C 0.072 3.928 5 H 0.097 0.903 6 O -0.376 6.376 7 C -0.050 4.050 8 H 0.121 0.879 9 C -0.028 4.028 10 O -0.394 6.394 11 N -0.312 5.312 12 C -0.006 4.006 13 C -0.161 4.161 14 C -0.073 4.073 15 C -0.241 4.241 16 C 0.108 3.892 17 N -0.341 5.341 18 C -0.045 4.045 19 C 0.146 3.854 20 C -0.582 4.582 21 H 0.066 0.934 22 C -0.186 4.186 23 N -0.566 5.566 24 Si 0.784 3.216 25 H -0.193 1.193 26 H -0.202 1.202 27 H -0.200 1.200 28 C -0.241 4.241 29 C -0.080 4.080 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.065 0.935 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.233 0.767 38 H 0.079 0.921 39 H 0.069 0.931 40 H 0.243 0.757 41 H 0.166 0.834 42 H 0.065 0.935 43 H 0.098 0.902 44 H 0.140 0.860 45 H 0.111 0.889 46 H 0.071 0.929 47 H 0.074 0.926 48 H 0.096 0.904 49 H 0.027 0.973 50 H 0.029 0.971 51 H 0.076 0.924 52 H 0.149 0.851 53 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 16.261 -8.177 -16.507 24.572 hybrid contribution 0.155 0.326 0.516 0.630 sum 16.416 -7.851 -15.991 24.225 Atomic orbital electron populations 1.21775 0.95954 1.01617 1.01599 1.21427 0.95569 0.97048 1.01486 1.22134 0.95736 0.96657 1.02993 1.21539 0.92281 0.92351 0.86633 0.90292 1.86590 1.80630 1.53742 1.16675 1.22428 0.91631 0.96716 0.94207 0.87877 1.22791 0.95758 0.93247 0.90960 1.86419 1.28591 1.69398 1.54982 1.60434 1.57795 1.08103 1.04874 1.20656 0.99304 0.86625 0.93968 1.19513 0.92629 1.06231 0.97688 1.20786 0.95697 0.95498 0.95367 1.20790 0.98642 1.09102 0.95537 1.18226 0.93401 0.91640 0.85970 1.46968 1.06835 1.66904 1.13369 1.21594 0.93146 0.99827 0.89900 1.18753 0.76410 0.94992 0.95267 1.21754 0.93583 1.00815 1.42003 0.93370 1.25762 0.97411 0.99469 0.95913 1.70023 1.06280 1.31367 1.48921 0.85586 0.77414 0.79502 0.79070 1.19317 1.20249 1.19977 1.20772 0.92428 1.10366 1.00515 1.20900 0.99630 0.95748 0.91705 0.92505 0.93791 0.92270 0.91653 0.93498 0.91171 0.91414 0.76717 0.92120 0.93081 0.75656 0.83426 0.93501 0.90223 0.86035 0.88899 0.92902 0.92611 0.90375 0.97302 0.97135 0.92354 0.85089 0.84245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 9.91 71.98 0.71 -2.21 16 2 C -0.12 -2.32 5.83 30.59 0.18 -2.14 16 3 C -0.14 -2.64 4.83 30.60 0.15 -2.49 16 4 C 0.13 2.39 2.56 30.59 0.08 2.47 16 5 H 0.08 1.88 7.55 -2.38 -0.02 1.86 16 6 O -0.57 -9.29 12.32 -148.98 -1.84 -11.12 16 7 C 0.06 0.93 2.14 44.91 0.10 1.03 16 8 H 0.10 1.26 7.80 -2.38 -0.02 1.24 16 9 C 0.05 0.68 6.51 71.98 0.47 1.15 16 10 O -0.59 -9.25 12.13 -148.98 -1.81 -11.06 16 11 N -0.68 -13.67 5.35 -495.62 -2.65 -16.32 16 12 C 0.12 2.45 5.61 85.56 0.48 2.93 16 13 C -0.16 -4.37 5.39 -19.84 -0.11 -4.48 16 14 C -0.05 -1.85 9.69 22.25 0.22 -1.63 16 15 C -0.22 -9.22 9.21 22.40 0.21 -9.02 16 16 C 0.21 8.73 6.55 38.21 0.25 8.98 16 17 N -0.63 -28.09 2.99 -726.57 -2.17 -30.26 16 18 C 0.10 3.45 10.19 127.77 1.30 4.76 16 19 C 0.27 14.27 4.91 85.63 0.42 14.69 16 20 C -0.54 -31.03 9.39 25.60 0.24 -30.79 16 21 H 0.05 2.80 7.81 -2.91 -0.02 2.77 16 22 C 0.01 0.78 5.46 84.66 0.46 1.25 16 23 N -0.93 -54.97 13.29 21.45 0.28 -54.68 16 24 Si 0.96 44.79 29.54 68.60 2.03 46.81 16 25 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 26 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 27 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 28 C -0.22 -7.16 9.21 22.40 0.21 -6.95 16 29 C -0.06 -1.67 9.69 22.25 0.22 -1.45 16 30 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.04 0.95 8.14 -2.38 -0.02 0.93 16 32 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.06 1.23 7.82 -2.39 -0.02 1.21 16 34 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 35 H 0.07 1.68 7.43 -2.39 -0.02 1.66 16 36 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.38 3.24 9.03 -74.06 -0.67 2.57 16 38 H 0.06 0.69 7.84 -2.38 -0.02 0.68 16 39 H 0.05 0.59 7.36 -2.39 -0.02 0.57 16 40 H 0.39 3.04 9.12 -74.06 -0.68 2.37 16 41 H 0.35 7.86 7.91 -89.69 -0.71 7.15 16 42 H 0.05 0.78 7.31 -2.39 -0.02 0.76 16 43 H 0.08 1.49 8.00 -2.39 -0.02 1.48 16 44 H 0.12 3.76 8.06 -2.91 -0.02 3.74 16 45 H 0.09 4.56 6.14 -2.91 -0.02 4.55 16 46 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 47 H 0.06 2.04 8.07 -2.38 -0.02 2.03 16 48 H 0.08 2.33 6.20 -2.39 -0.01 2.31 16 49 H 0.01 0.50 8.07 -2.39 -0.02 0.48 16 50 H 0.01 0.61 6.20 -2.38 -0.01 0.60 16 51 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 52 H 0.13 3.74 6.14 -2.91 -0.02 3.72 16 53 H 0.14 2.87 8.06 -2.91 -0.02 2.85 16 Total: -1.00 -68.55 423.10 -1.72 -70.27 By element: Atomic # 1 Polarization: 31.41 SS G_CDS: -1.14 Total: 30.27 kcal Atomic # 6 Polarization: -29.48 SS G_CDS: 5.57 Total: -23.90 kcal Atomic # 7 Polarization: -96.73 SS G_CDS: -4.54 Total: -101.27 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: -3.64 Total: -22.18 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.81 kcal Total: -68.55 -1.72 -70.27 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842226195.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.108 kcal (2) G-P(sol) polarization free energy of solvation -68.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds