Wall clock time and date at job start Tue Mar 31 2020 20:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47404 * 2 1 4 4 C 1.52997 * 109.47404 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47153 * 54.99686 * 4 3 2 6 6 O 1.42896 * 109.46906 * 294.99968 * 4 3 2 7 7 C 1.53000 * 109.47060 * 175.00005 * 4 3 2 8 8 H 1.09001 * 109.47194 * 299.99650 * 7 4 3 9 9 C 1.53001 * 109.46886 * 180.02562 * 7 4 3 10 10 O 1.42908 * 109.47032 * 304.99322 * 9 7 4 11 11 N 1.46896 * 109.47261 * 59.99962 * 7 4 3 12 12 C 1.46903 * 110.99773 * 204.99672 * 11 7 4 13 13 C 1.50697 * 109.46926 * 179.97438 * 12 11 7 14 14 C 1.38281 * 119.93036 * 269.72937 * 13 12 11 15 15 C 1.38101 * 120.07865 * 179.72574 * 14 13 12 16 16 C 1.38920 * 119.92344 * 0.54871 * 15 14 13 17 17 N 1.39666 * 120.07172 * 179.74730 * 16 15 14 18 18 C 1.46505 * 119.99475 * 179.97438 * 17 16 15 19 19 C 1.46503 * 120.00665 * 359.97438 * 17 16 15 20 20 C 1.50698 * 109.46933 * 90.00057 * 19 17 16 21 21 H 1.07997 * 120.00034 * 359.97438 * 20 19 17 22 22 C 1.37878 * 119.99519 * 180.02562 * 20 19 17 23 23 N 1.31513 * 120.00309 * 359.97438 * 22 20 19 24 24 Si 1.86810 * 119.99653 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.46937 * 89.99855 * 24 22 20 26 26 H 1.48503 * 109.46765 * 209.99999 * 24 22 20 27 27 H 1.48500 * 109.46932 * 329.99998 * 24 22 20 28 28 C 1.38910 * 119.84803 * 359.72597 * 16 15 14 29 29 C 1.38100 * 119.92408 * 359.97438 * 28 16 15 30 30 H 1.08995 * 109.47630 * 59.99990 * 1 2 3 31 31 H 1.09002 * 109.47754 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47325 * 300.00168 * 1 2 3 33 33 H 1.09000 * 109.46875 * 239.99545 * 2 1 3 34 34 H 1.09008 * 109.47017 * 119.99922 * 2 1 3 35 35 H 1.09000 * 109.47017 * 59.99643 * 3 2 1 36 36 H 1.09008 * 109.46970 * 299.99951 * 3 2 1 37 37 H 0.96708 * 114.00101 * 299.99268 * 6 4 3 38 38 H 1.09000 * 109.47679 * 64.99728 * 9 7 4 39 39 H 1.08998 * 109.46991 * 184.99937 * 9 7 4 40 40 H 0.96692 * 114.00200 * 180.02562 * 10 9 7 41 41 H 1.00899 * 111.00323 * 328.95317 * 11 7 4 42 42 H 1.08996 * 109.47267 * 300.00021 * 12 11 7 43 43 H 1.08998 * 109.47105 * 60.00376 * 12 11 7 44 44 H 1.08003 * 119.96178 * 359.97438 * 14 13 12 45 45 H 1.08000 * 120.03961 * 180.26914 * 15 14 13 46 46 H 1.09007 * 109.47222 * 90.00436 * 18 17 16 47 47 H 1.09006 * 109.46916 * 210.00023 * 18 17 16 48 48 H 1.08992 * 109.47502 * 329.99952 * 18 17 16 49 49 H 1.09001 * 109.47223 * 210.00033 * 19 17 16 50 50 H 1.09001 * 109.46710 * 329.99986 * 19 17 16 51 51 H 0.97004 * 119.99768 * 180.02562 * 23 22 20 52 52 H 1.08001 * 120.03484 * 179.97438 * 28 16 15 53 53 H 1.08001 * 119.96082 * 179.97438 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9330 0.8530 -0.8427 6 8 4.0468 0.8729 1.2201 7 6 4.0799 2.8794 -0.1264 8 1 3.7163 3.3139 -1.0576 9 6 5.6099 2.8793 -0.1277 10 8 6.0872 2.2054 1.0387 11 7 3.5908 3.6737 1.0084 12 6 3.5279 5.1004 0.6642 13 6 3.0224 5.8814 1.8497 14 6 1.6658 6.1010 2.0036 15 6 1.1987 6.8114 3.0919 16 6 2.0943 7.3154 4.0267 17 7 1.6257 8.0388 5.1256 18 6 2.5716 8.5690 6.1107 19 6 0.1884 8.2674 5.2934 20 6 -0.4086 7.1422 6.0988 21 1 0.2197 6.3372 6.4501 22 6 -1.7571 7.1401 6.3861 23 7 -2.5222 8.1202 5.9578 24 14 -2.4972 5.7449 7.3839 25 1 -2.4430 6.0863 8.8281 26 1 -3.9105 5.5404 6.9762 27 1 -1.7265 4.4992 7.1403 28 6 3.4568 7.0978 3.8660 29 6 3.9166 6.3812 2.7787 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3635 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8901 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9563 -0.8901 37 1 3.7618 1.3473 2.0132 38 1 5.9726 2.3657 -1.0180 39 1 5.9733 3.9070 -0.1277 40 1 7.0512 2.1675 1.1042 41 1 2.6933 3.3381 1.3246 42 1 4.5232 5.4532 0.3939 43 1 2.8512 5.2414 -0.1786 44 1 0.9704 5.7131 1.2739 45 1 0.1388 6.9788 3.2137 46 1 2.8815 9.5712 5.8142 47 1 2.0920 8.6116 7.0887 48 1 3.4450 7.9190 6.1624 49 1 0.0290 9.2115 5.8144 50 1 -0.2898 8.3072 4.3147 51 1 -3.4709 8.1189 6.1603 52 1 4.1558 7.4886 4.5907 53 1 4.9758 6.2120 2.6530 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842226197.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:42 Heat of formation + Delta-G solvation = -97.197371 kcal Electronic energy + Delta-G solvation = -29621.845362 eV Core-core repulsion = 25685.124360 eV Total energy + Delta-G solvation = -3936.721001 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.56046 -39.88347 -37.58777 -37.01720 -35.65691 -34.88168 -34.68908 -32.07665 -31.87701 -29.99395 -29.53068 -28.68708 -27.03340 -25.64008 -24.58849 -23.56902 -22.95177 -22.07050 -21.19969 -21.02830 -18.63825 -18.33405 -18.09859 -17.58768 -16.90733 -16.85627 -16.45443 -16.30518 -15.71224 -15.61977 -15.35400 -15.19203 -14.89097 -14.58735 -14.44942 -14.29944 -14.24450 -14.11466 -14.10030 -13.92189 -13.20905 -13.13855 -13.05913 -12.94341 -12.71629 -12.68737 -12.62808 -12.54024 -12.34402 -12.16414 -12.09022 -11.83818 -11.75225 -11.52462 -11.46474 -11.39541 -10.76606 -10.64732 -10.45910 -10.25591 -9.65770 -9.24706 -8.36535 -7.79895 -6.37953 0.71977 0.85158 1.36422 1.37414 1.48669 2.33945 2.63782 2.98589 3.05678 3.37471 3.51011 3.65785 3.86912 4.00907 4.06441 4.08772 4.17523 4.26050 4.33811 4.40380 4.44045 4.49595 4.52139 4.62895 4.64899 4.71568 4.72667 4.77282 4.80230 4.86377 4.87389 4.90444 4.93563 5.01441 5.02842 5.06132 5.13843 5.20396 5.23682 5.34030 5.38916 5.44901 5.59469 5.68167 5.70459 5.93043 6.06978 6.12766 6.24302 6.45236 6.50294 6.82651 6.94167 6.99536 7.18656 7.34077 8.82681 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.009853 B = 0.002957 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2841.154221 B = 9466.508047 C =11390.421905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.114 4.114 3 C -0.155 4.155 4 C 0.117 3.883 5 H 0.101 0.899 6 O -0.550 6.550 7 C 0.052 3.948 8 H 0.073 0.927 9 C 0.093 3.907 10 O -0.559 6.559 11 N -0.678 5.678 12 C 0.122 3.878 13 C -0.158 4.158 14 C -0.067 4.067 15 C -0.216 4.216 16 C 0.213 3.787 17 N -0.633 5.633 18 C 0.098 3.902 19 C 0.267 3.733 20 C -0.542 4.542 21 H 0.048 0.952 22 C 0.014 3.986 23 N -0.926 5.926 24 Si 0.960 3.040 25 H -0.271 1.271 26 H -0.278 1.278 27 H -0.272 1.272 28 C -0.219 4.219 29 C -0.047 4.047 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.045 0.955 33 H 0.066 0.934 34 H 0.056 0.944 35 H 0.059 0.941 36 H 0.076 0.924 37 H 0.375 0.625 38 H 0.052 0.948 39 H 0.042 0.958 40 H 0.378 0.622 41 H 0.338 0.662 42 H 0.082 0.918 43 H 0.039 0.961 44 H 0.123 0.877 45 H 0.094 0.906 46 H 0.052 0.948 47 H 0.056 0.944 48 H 0.077 0.923 49 H 0.009 0.991 50 H 0.011 0.989 51 H 0.267 0.733 52 H 0.130 0.870 53 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.483 -11.260 -15.533 24.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.152 4.152 3 C -0.193 4.193 4 C 0.057 3.943 5 H 0.119 0.881 6 O -0.355 6.355 7 C -0.058 4.058 8 H 0.090 0.910 9 C 0.014 3.986 10 O -0.364 6.364 11 N -0.312 5.312 12 C -0.006 4.006 13 C -0.160 4.160 14 C -0.087 4.087 15 C -0.239 4.239 16 C 0.108 3.892 17 N -0.340 5.340 18 C -0.045 4.045 19 C 0.146 3.854 20 C -0.580 4.580 21 H 0.067 0.933 22 C -0.186 4.186 23 N -0.566 5.566 24 Si 0.785 3.215 25 H -0.196 1.196 26 H -0.203 1.203 27 H -0.197 1.197 28 C -0.241 4.241 29 C -0.066 4.066 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.064 0.936 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.095 0.905 37 H 0.223 0.777 38 H 0.070 0.930 39 H 0.060 0.940 40 H 0.225 0.775 41 H 0.159 0.841 42 H 0.100 0.900 43 H 0.057 0.943 44 H 0.141 0.859 45 H 0.113 0.887 46 H 0.071 0.929 47 H 0.074 0.926 48 H 0.096 0.904 49 H 0.027 0.973 50 H 0.029 0.971 51 H 0.076 0.924 52 H 0.148 0.852 53 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 15.472 -11.507 -15.359 24.651 hybrid contribution -1.578 0.360 0.503 1.695 sum 13.893 -11.147 -14.856 23.194 Atomic orbital electron populations 1.21798 0.95874 1.01852 1.01669 1.21375 0.95547 0.96118 1.02150 1.22386 0.96319 0.98022 1.02600 1.21948 0.91731 0.91932 0.88656 0.88119 1.86509 1.77312 1.56108 1.15560 1.22458 0.95244 0.94749 0.93389 0.90955 1.22069 0.93083 0.95496 0.87931 1.86710 1.26372 1.79320 1.44010 1.60488 1.33670 1.01969 1.35080 1.20668 1.00416 0.86792 0.92698 1.19490 0.92338 1.04486 0.99710 1.20817 0.95630 0.96343 0.95866 1.20753 0.98586 1.06643 0.97905 1.18222 0.93413 0.90467 0.87083 1.46969 1.06822 1.56709 1.23542 1.21597 0.92915 0.98336 0.91655 1.18762 0.76440 0.94884 0.95357 1.21777 0.93772 1.08280 1.34202 0.93345 1.25764 0.97353 0.98499 0.96943 1.70035 1.06279 1.33431 1.46863 0.85522 0.77610 0.79341 0.79026 1.19599 1.20330 1.19709 1.20801 0.92561 1.08391 1.02395 1.20838 0.99673 0.94013 0.92074 0.92370 0.92343 0.93557 0.91545 0.92499 0.92218 0.90500 0.77687 0.92955 0.93994 0.77537 0.84141 0.89962 0.94267 0.85903 0.88735 0.92917 0.92551 0.90429 0.97338 0.97086 0.92376 0.85208 0.84571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 9.91 71.98 0.71 -1.78 16 2 C -0.11 -1.86 5.83 30.59 0.18 -1.68 16 3 C -0.16 -2.45 4.53 30.59 0.14 -2.31 16 4 C 0.12 1.94 2.76 30.59 0.08 2.02 16 5 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 6 O -0.55 -12.01 10.70 -127.28 -1.36 -13.37 16 7 C 0.05 0.82 2.36 44.92 0.11 0.92 16 8 H 0.07 0.96 7.80 -2.39 -0.02 0.95 16 9 C 0.09 1.41 6.80 71.98 0.49 1.90 16 10 O -0.56 -10.42 11.37 -127.28 -1.45 -11.86 16 11 N -0.68 -13.42 5.68 -495.59 -2.82 -16.23 16 12 C 0.12 2.52 5.61 85.56 0.48 3.00 16 13 C -0.16 -4.39 5.39 -19.84 -0.11 -4.49 16 14 C -0.07 -2.21 9.69 22.25 0.22 -2.00 16 15 C -0.22 -8.97 9.21 22.40 0.21 -8.77 16 16 C 0.21 8.73 6.55 38.22 0.25 8.98 16 17 N -0.63 -27.99 2.99 -726.53 -2.17 -30.17 16 18 C 0.10 3.46 10.19 127.77 1.30 4.76 16 19 C 0.27 14.15 4.91 85.63 0.42 14.57 16 20 C -0.54 -30.67 9.39 25.60 0.24 -30.43 16 21 H 0.05 2.79 7.81 -2.91 -0.02 2.77 16 22 C 0.01 0.77 5.46 84.66 0.46 1.23 16 23 N -0.93 -54.50 13.29 21.45 0.28 -54.22 16 24 Si 0.96 44.31 29.54 68.60 2.03 46.33 16 25 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 26 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 27 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 28 C -0.22 -7.32 9.21 22.40 0.21 -7.11 16 29 C -0.05 -1.34 9.69 22.25 0.22 -1.13 16 30 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.06 1.07 7.82 -2.38 -0.02 1.05 16 35 H 0.06 1.08 6.42 -2.39 -0.02 1.06 16 36 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 37 H 0.38 8.35 8.44 -74.05 -0.62 7.72 16 38 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.04 0.61 7.35 -2.39 -0.02 0.60 16 40 H 0.38 4.28 9.12 -74.06 -0.68 3.61 16 41 H 0.34 7.19 6.17 -89.69 -0.55 6.63 16 42 H 0.08 1.53 7.30 -2.39 -0.02 1.51 16 43 H 0.04 0.74 7.99 -2.39 -0.02 0.72 16 44 H 0.12 3.51 8.06 -2.91 -0.02 3.49 16 45 H 0.09 4.54 6.14 -2.91 -0.02 4.53 16 46 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 47 H 0.06 2.07 8.07 -2.38 -0.02 2.05 16 48 H 0.08 2.34 6.20 -2.39 -0.01 2.33 16 49 H 0.01 0.48 8.07 -2.39 -0.02 0.46 16 50 H 0.01 0.64 6.20 -2.39 -0.01 0.62 16 51 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 52 H 0.13 3.82 6.14 -2.91 -0.02 3.80 16 53 H 0.14 3.19 8.06 -2.91 -0.02 3.17 16 Total: -1.00 -66.46 419.01 -0.82 -67.28 By element: Atomic # 1 Polarization: 35.48 SS G_CDS: -0.94 Total: 34.54 kcal Atomic # 6 Polarization: -27.91 SS G_CDS: 5.60 Total: -22.31 kcal Atomic # 7 Polarization: -95.91 SS G_CDS: -4.70 Total: -100.62 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: -2.81 Total: -25.23 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.33 kcal Total: -66.46 -0.82 -67.28 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842226197.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.920 kcal (2) G-P(sol) polarization free energy of solvation -66.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds