Wall clock time and date at job start Tue Mar 31 2020 20:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46790 * 2 1 4 4 C 1.52990 * 109.47271 * 239.99773 * 2 1 3 5 5 N 1.46506 * 109.46861 * 119.99517 * 2 1 3 6 6 C 1.45746 * 117.94777 * 0.11121 * 5 2 1 7 7 C 1.52915 * 110.48839 * 160.92475 * 6 5 2 8 8 C 1.53348 * 108.67462 * 50.75003 * 7 6 5 9 9 C 1.53065 * 108.42541 * 292.46922 * 8 7 6 10 10 H 1.09000 * 109.40248 * 288.85548 * 9 8 7 11 11 C 1.50694 * 109.39964 * 169.02666 * 9 8 7 12 12 O 1.21287 * 120.00080 * 0.02562 * 11 9 8 13 13 N 1.34781 * 120.00169 * 180.02562 * 11 9 8 14 14 C 1.46499 * 119.99886 * 180.02562 * 13 11 9 15 15 H 1.08998 * 110.43769 * 323.90819 * 14 13 11 16 16 C 1.54265 * 110.48820 * 86.45505 * 14 13 11 17 17 C 1.53870 * 106.60017 * 142.41609 * 16 14 13 18 18 C 1.54265 * 106.60069 * 359.97438 * 17 16 14 19 19 H 1.09004 * 110.48830 * 95.19568 * 18 17 16 20 20 C 1.50696 * 110.49116 * 217.71210 * 18 17 16 21 21 H 1.07993 * 120.00236 * 118.54569 * 20 18 17 22 22 C 1.37883 * 119.99906 * 298.54599 * 20 18 17 23 23 N 1.31512 * 119.99661 * 359.97438 * 22 20 18 24 24 Si 1.86795 * 119.99963 * 179.72196 * 22 20 18 25 25 H 1.48496 * 109.46997 * 60.00325 * 24 22 20 26 26 H 1.48499 * 109.47004 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47261 * 299.99841 * 24 22 20 28 28 C 1.54889 * 110.59470 * 201.29345 * 14 13 11 29 29 C 1.33354 * 117.94137 * 180.10815 * 5 2 1 30 30 O 1.21281 * 118.24988 * 2.22653 * 29 5 2 31 31 H 1.08996 * 109.47439 * 300.00402 * 1 2 3 32 32 H 1.08996 * 109.47118 * 60.00482 * 1 2 3 33 33 H 1.09007 * 109.46763 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.47131 * 186.77505 * 3 2 1 35 35 H 1.09003 * 109.46902 * 306.77527 * 3 2 1 36 36 H 1.08999 * 109.47546 * 66.77198 * 3 2 1 37 37 H 1.08998 * 109.47473 * 300.00095 * 4 2 1 38 38 H 1.09004 * 109.47609 * 59.99905 * 4 2 1 39 39 H 1.09001 * 109.46999 * 179.97438 * 4 2 1 40 40 H 1.09004 * 109.30144 * 40.61207 * 6 5 2 41 41 H 1.09008 * 109.30234 * 281.23506 * 6 5 2 42 42 H 1.09004 * 109.60395 * 290.99686 * 7 6 5 43 43 H 1.09001 * 109.74183 * 170.59174 * 7 6 5 44 44 H 1.09001 * 109.67064 * 172.73318 * 8 7 6 45 45 H 1.08999 * 109.69812 * 52.22693 * 8 7 6 46 46 H 0.96998 * 119.99966 * 0.02562 * 13 11 9 47 47 H 1.09002 * 110.03326 * 23.13550 * 16 14 13 48 48 H 1.09004 * 110.03204 * 261.70437 * 16 14 13 49 49 H 1.08997 * 110.03279 * 240.71368 * 17 16 14 50 50 H 1.09001 * 110.07584 * 119.30734 * 17 16 14 51 51 H 0.97005 * 119.99731 * 179.97438 * 23 22 20 52 52 H 1.09002 * 110.75975 * 85.00691 * 28 14 13 53 53 H 1.09002 * 110.76223 * 321.63572 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2491 5 7 2.0183 -0.6905 1.1963 6 6 1.0321 -1.2292 2.1244 7 6 1.6675 -2.2892 3.0250 8 6 2.9470 -1.7086 3.6393 9 6 3.9729 -1.5085 2.5211 10 1 4.3350 -2.4797 2.1838 11 6 5.1302 -0.6966 3.0429 12 8 5.1338 -0.3165 4.1947 13 7 6.1613 -0.3927 2.2298 14 6 7.2866 0.3962 2.7374 15 1 6.9359 1.1489 3.4434 16 6 8.3331 -0.5217 3.4022 17 6 9.7140 0.0560 3.0462 18 6 9.4586 1.3045 2.1768 19 1 9.4608 2.2046 2.7917 20 6 10.4941 1.4094 1.0870 21 1 10.1925 1.3768 0.0506 22 6 11.8267 1.5469 1.4132 23 7 12.1940 1.5870 2.6754 24 14 13.1111 1.6690 0.0624 25 1 12.8255 2.8535 -0.7865 26 1 14.4581 1.8104 0.6714 27 1 13.0708 0.4410 -0.7715 28 6 8.0543 1.0641 1.5697 29 6 3.3373 -0.7868 1.3676 30 8 4.0623 -0.2637 0.5481 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5137 -0.8900 33 1 -0.3633 -1.0278 -0.0005 34 1 3.1231 1.4450 -0.1212 35 1 1.5809 1.9901 -0.8232 36 1 1.7789 1.9202 0.9443 37 1 1.6767 -1.7489 -1.2492 38 1 1.6767 -0.2075 -2.1392 39 1 3.1300 -0.7208 -1.2493 40 1 0.2145 -1.6785 1.5607 41 1 0.6388 -0.4211 2.7414 42 1 1.9134 -3.1715 2.4340 43 1 0.9723 -2.5628 3.8186 44 1 3.3440 -2.4004 4.3821 45 1 2.7264 -0.7509 4.1107 46 1 6.1582 -0.6963 1.3086 47 1 8.2412 -1.5358 3.0133 48 1 8.1961 -0.5223 4.4836 49 1 10.2922 -0.6776 2.4845 50 1 10.2480 0.3358 3.9543 51 1 13.1315 1.6834 2.9049 52 1 7.5872 2.0085 1.2903 53 1 8.1142 0.3931 0.7128 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897889403.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:13 Heat of formation + Delta-G solvation = -107.701266 kcal Electronic energy + Delta-G solvation = -30941.167998 eV Core-core repulsion = 27003.991513 eV Total energy + Delta-G solvation = -3937.176484 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.32367 -40.66882 -38.81299 -37.87790 -36.79508 -35.30503 -33.83764 -32.61769 -30.99916 -29.99364 -29.00428 -28.28674 -28.20592 -26.07186 -25.25750 -23.82139 -22.29703 -21.54968 -21.10843 -20.73788 -19.22865 -18.49890 -18.44686 -17.71109 -17.29927 -16.91087 -16.60812 -16.33974 -16.23026 -15.86806 -15.32889 -15.15177 -14.89338 -14.49531 -14.44454 -14.37208 -14.26795 -14.07462 -13.72401 -13.24904 -13.15586 -13.09358 -13.05072 -12.81485 -12.79169 -12.55742 -12.48662 -12.47977 -12.38272 -12.14266 -12.10198 -11.99213 -11.82589 -11.74980 -11.72973 -11.45274 -11.18072 -10.89611 -10.78487 -10.48922 -10.41130 -9.97091 -9.61625 -8.11811 -6.22378 1.29338 1.41775 1.43498 1.51099 1.62055 2.02457 2.28235 2.44467 3.18730 3.41513 3.49408 3.74848 3.82173 3.90045 3.96467 3.99406 4.00607 4.13505 4.16725 4.20040 4.26902 4.45741 4.59386 4.65054 4.68177 4.71727 4.75901 4.82103 4.83851 4.85609 4.88575 4.97458 4.97998 5.02177 5.04149 5.06306 5.09170 5.09952 5.24785 5.31169 5.33709 5.35022 5.39166 5.44142 5.61561 5.64695 5.70505 5.89901 5.94816 6.36202 6.46247 6.58218 6.87722 7.11543 7.23784 7.45044 8.97232 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.017812 B = 0.002722 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.577180 B =10283.998966 C =11409.235751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.160 3.840 3 C -0.162 4.162 4 C -0.159 4.159 5 N -0.586 5.586 6 C 0.097 3.903 7 C -0.126 4.126 8 C -0.102 4.102 9 C -0.120 4.120 10 H 0.149 0.851 11 C 0.521 3.479 12 O -0.578 6.578 13 N -0.696 5.696 14 C 0.149 3.851 15 H 0.065 0.935 16 C -0.120 4.120 17 C -0.082 4.082 18 C 0.042 3.958 19 H -0.003 1.003 20 C -0.532 4.532 21 H 0.056 0.944 22 C 0.011 3.989 23 N -0.920 5.920 24 Si 0.956 3.044 25 H -0.271 1.271 26 H -0.285 1.285 27 H -0.269 1.269 28 C -0.102 4.102 29 C 0.521 3.479 30 O -0.562 6.562 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.051 0.949 35 H 0.075 0.925 36 H 0.044 0.956 37 H 0.063 0.937 38 H 0.072 0.928 39 H 0.053 0.947 40 H 0.111 0.889 41 H 0.071 0.929 42 H 0.085 0.915 43 H 0.115 0.885 44 H 0.085 0.915 45 H 0.060 0.940 46 H 0.412 0.588 47 H 0.068 0.932 48 H 0.052 0.948 49 H 0.036 0.964 50 H 0.031 0.969 51 H 0.260 0.740 52 H 0.053 0.947 53 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.128 -10.709 -3.891 32.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.077 3.923 3 C -0.220 4.220 4 C -0.216 4.216 5 N -0.318 5.318 6 C -0.024 4.024 7 C -0.163 4.163 8 C -0.140 4.140 9 C -0.144 4.144 10 H 0.166 0.834 11 C 0.307 3.693 12 O -0.458 6.458 13 N -0.346 5.346 14 C 0.044 3.956 15 H 0.083 0.917 16 C -0.159 4.159 17 C -0.120 4.120 18 C 0.023 3.977 19 H 0.016 0.984 20 C -0.570 4.570 21 H 0.075 0.925 22 C -0.188 4.188 23 N -0.559 5.559 24 Si 0.781 3.219 25 H -0.197 1.197 26 H -0.211 1.211 27 H -0.194 1.194 28 C -0.141 4.141 29 C 0.308 3.692 30 O -0.442 6.442 31 H 0.088 0.912 32 H 0.099 0.901 33 H 0.100 0.900 34 H 0.070 0.930 35 H 0.094 0.906 36 H 0.063 0.937 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.072 0.928 40 H 0.129 0.871 41 H 0.089 0.911 42 H 0.104 0.896 43 H 0.133 0.867 44 H 0.104 0.896 45 H 0.079 0.921 46 H 0.250 0.750 47 H 0.087 0.913 48 H 0.071 0.929 49 H 0.055 0.945 50 H 0.050 0.950 51 H 0.069 0.931 52 H 0.071 0.929 53 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -29.615 -10.161 -3.384 31.492 hybrid contribution 1.545 0.412 -0.638 1.721 sum -28.070 -9.749 -4.022 29.986 Atomic orbital electron populations 1.22161 0.90768 1.03815 1.03808 1.20595 0.95738 0.91462 0.84533 1.22211 1.02368 0.95753 1.01646 1.22160 1.02312 1.00458 0.96715 1.47532 1.04796 1.55510 1.23954 1.21859 0.91589 0.97301 0.91660 1.21936 0.96322 0.97965 1.00096 1.21515 0.94171 1.02682 0.95633 1.21540 0.94957 1.00995 0.96886 0.83357 1.20508 0.83481 0.79900 0.85391 1.90675 1.80473 1.55296 1.19386 1.46133 1.19413 1.53688 1.15365 1.21662 0.85297 0.92592 0.96072 0.91682 1.22474 0.95009 0.98952 0.99427 1.21811 0.93887 0.97869 0.98481 1.19369 0.91273 0.93159 0.93902 0.98434 1.21459 0.92247 1.50249 0.93094 0.92545 1.25799 1.00677 0.94817 0.97508 1.70109 1.16964 1.50799 1.18045 0.85644 0.77930 0.78916 0.79369 1.19665 1.21070 1.19385 1.22607 0.95785 0.99116 0.96546 1.19608 0.83019 0.80445 0.86153 1.90665 1.60987 1.47697 1.44885 0.91247 0.90115 0.89963 0.92976 0.90604 0.93711 0.91770 0.90864 0.92826 0.87147 0.91116 0.89637 0.86670 0.89630 0.92077 0.74985 0.91343 0.92927 0.94518 0.95024 0.93078 0.92854 0.91296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 7.30 71.98 0.53 -0.65 16 2 C 0.16 2.48 1.03 3.60 0.00 2.48 16 3 C -0.16 -3.29 8.24 71.98 0.59 -2.70 16 4 C -0.16 -2.60 8.36 71.98 0.60 -1.99 16 5 N -0.59 -9.55 2.79 -779.58 -2.17 -11.72 16 6 C 0.10 0.86 5.24 86.49 0.45 1.31 16 7 C -0.13 -0.98 6.02 30.68 0.18 -0.80 16 8 C -0.10 -1.68 4.78 30.73 0.15 -1.53 16 9 C -0.12 -2.59 2.78 -12.43 -0.03 -2.62 16 10 H 0.15 2.48 8.14 -2.39 -0.02 2.46 16 11 C 0.52 16.63 7.06 87.65 0.62 17.25 16 12 O -0.58 -22.37 15.50 -3.05 -0.05 -22.41 16 13 N -0.70 -23.50 4.60 -437.45 -2.01 -25.51 16 14 C 0.15 5.98 3.16 46.07 0.15 6.12 16 15 H 0.06 2.84 7.66 -2.39 -0.02 2.82 16 16 C -0.12 -4.96 6.53 31.32 0.20 -4.76 16 17 C -0.08 -4.08 5.40 31.32 0.17 -3.91 16 18 C 0.04 2.21 2.79 -10.47 -0.03 2.18 16 19 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 20 C -0.53 -30.24 8.40 25.60 0.22 -30.02 16 21 H 0.06 3.11 7.77 -2.91 -0.02 3.09 16 22 C 0.01 0.61 5.33 84.66 0.45 1.07 16 23 N -0.92 -55.19 12.35 21.45 0.26 -54.93 16 24 Si 0.96 44.66 29.54 68.60 2.03 46.69 16 25 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 26 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 27 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 28 C -0.10 -4.48 5.89 31.88 0.19 -4.29 16 29 C 0.52 11.87 6.45 87.71 0.57 12.44 16 30 O -0.56 -16.40 10.29 -3.03 -0.03 -16.43 16 31 H 0.07 0.50 7.63 -2.39 -0.02 0.48 16 32 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.08 0.38 6.74 -2.38 -0.02 0.36 16 34 H 0.05 1.44 6.05 -2.39 -0.01 1.43 16 35 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.05 1.24 6.01 -2.39 -0.01 1.22 16 40 H 0.11 0.40 6.02 -2.38 -0.01 0.38 16 41 H 0.07 0.61 8.04 -2.38 -0.02 0.59 16 42 H 0.09 0.52 8.12 -2.39 -0.02 0.51 16 43 H 0.12 0.38 8.14 -2.39 -0.02 0.36 16 44 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.06 1.28 7.73 -2.39 -0.02 1.26 16 46 H 0.41 12.99 7.17 -92.71 -0.66 12.32 16 47 H 0.07 2.58 8.04 -2.39 -0.02 2.56 16 48 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 49 H 0.04 1.90 7.83 -2.39 -0.02 1.89 16 50 H 0.03 1.69 7.94 -2.39 -0.02 1.67 16 51 H 0.26 14.88 8.31 -92.70 -0.77 14.11 16 52 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 53 H 0.07 2.91 7.94 -2.39 -0.02 2.89 16 Total: -1.00 -72.87 399.69 3.25 -69.63 By element: Atomic # 1 Polarization: 24.90 SS G_CDS: 0.22 Total: 25.12 kcal Atomic # 6 Polarization: -15.43 SS G_CDS: 5.00 Total: -10.43 kcal Atomic # 7 Polarization: -88.24 SS G_CDS: -3.92 Total: -92.16 kcal Atomic # 8 Polarization: -38.77 SS G_CDS: -0.08 Total: -38.84 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -72.87 3.25 -69.63 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897889403.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.076 kcal (2) G-P(sol) polarization free energy of solvation -72.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds