Wall clock time and date at job start Tue Mar 31 2020 20:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47225 * 2 1 4 4 C 1.52998 * 109.47471 * 239.99485 * 2 1 3 5 5 N 1.46501 * 109.46697 * 119.99678 * 2 1 3 6 6 C 1.45761 * 117.94470 * 238.60586 * 5 2 1 7 7 C 1.52922 * 110.50167 * 160.93435 * 6 5 2 8 8 C 1.53347 * 108.66783 * 50.72941 * 7 6 5 9 9 C 1.53065 * 108.45133 * 292.50279 * 8 7 6 10 10 H 1.08997 * 109.40852 * 288.74990 * 9 8 7 11 11 C 1.50708 * 109.39674 * 169.01034 * 9 8 7 12 12 O 1.21280 * 120.00334 * 333.83646 * 11 9 8 13 13 N 1.34780 * 119.99701 * 153.83100 * 11 9 8 14 14 C 1.46927 * 120.63055 * 354.80567 * 13 11 9 15 15 C 1.53632 * 108.54074 * 126.36371 * 14 13 11 16 16 C 1.53035 * 109.24171 * 54.85915 * 15 14 13 17 17 C 1.53040 * 109.53454 * 298.50636 * 16 15 14 18 18 H 1.09001 * 109.52613 * 301.39624 * 17 16 15 19 19 C 1.50705 * 109.49736 * 181.31952 * 17 16 15 20 20 H 1.07996 * 120.00321 * 240.16610 * 19 17 16 21 21 C 1.37882 * 119.99949 * 60.16153 * 19 17 16 22 22 N 1.31506 * 119.99820 * 359.97438 * 21 19 17 23 23 Si 1.86800 * 119.99968 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47301 * 59.99803 * 23 21 19 25 25 H 1.48498 * 109.47012 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.46660 * 299.99857 * 23 21 19 27 27 C 1.46927 * 120.62864 * 175.07874 * 13 11 9 28 28 C 1.33350 * 117.95086 * 58.62870 * 5 2 1 29 29 O 1.21289 * 118.24231 * 2.19741 * 28 5 2 30 30 H 1.08999 * 109.47579 * 292.82312 * 1 2 3 31 31 H 1.09003 * 109.46551 * 52.82178 * 1 2 3 32 32 H 1.09003 * 109.47144 * 172.81305 * 1 2 3 33 33 H 1.08997 * 109.47156 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.46526 * 299.99605 * 3 2 1 35 35 H 1.09000 * 109.46885 * 59.99227 * 3 2 1 36 36 H 1.09000 * 109.47310 * 300.00227 * 4 2 1 37 37 H 1.09005 * 109.46702 * 60.00463 * 4 2 1 38 38 H 1.09007 * 109.47190 * 179.97438 * 4 2 1 39 39 H 1.09000 * 109.29820 * 281.23920 * 6 5 2 40 40 H 1.08998 * 109.30148 * 40.81978 * 6 5 2 41 41 H 1.08993 * 109.59389 * 290.98322 * 7 6 5 42 42 H 1.09003 * 109.62223 * 170.49270 * 7 6 5 43 43 H 1.08999 * 109.67365 * 172.75506 * 8 7 6 44 44 H 1.09004 * 109.67573 * 52.25769 * 8 7 6 45 45 H 1.08992 * 109.58474 * 246.19314 * 14 13 11 46 46 H 1.08998 * 109.58563 * 6.62337 * 14 13 11 47 47 H 1.08997 * 109.63518 * 294.86303 * 15 14 13 48 48 H 1.09002 * 109.42508 * 174.72188 * 15 14 13 49 49 H 1.09006 * 109.46047 * 178.48724 * 16 15 14 50 50 H 1.08999 * 109.45473 * 58.52255 * 16 15 14 51 51 H 0.97007 * 119.99834 * 180.02562 * 22 21 19 52 52 H 1.08997 * 109.58544 * 353.37588 * 27 13 11 53 53 H 1.09005 * 109.58216 * 113.66339 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 2.0182 -0.6906 1.1962 6 6 2.8783 0.0511 2.1099 7 6 2.9047 -0.6196 3.4839 8 6 3.2190 -2.1088 3.2972 9 6 2.0354 -2.7681 2.5848 10 1 1.1887 -2.8278 3.2686 11 6 2.4240 -4.1577 2.1497 12 8 3.5884 -4.4239 1.9393 13 7 1.4776 -5.1046 1.9944 14 6 0.0793 -4.8314 2.3537 15 6 -0.8087 -5.1572 1.1432 16 6 -0.5447 -6.5971 0.6970 17 6 0.9187 -6.7412 0.2729 18 1 1.1337 -6.0441 -0.5370 19 6 1.1698 -8.1509 -0.1969 20 1 1.9021 -8.7653 0.3057 21 6 0.4645 -8.6564 -1.2684 22 7 -0.4277 -7.9085 -1.8801 23 14 0.7752 -10.4041 -1.8503 24 1 0.4802 -11.3531 -0.7469 25 1 -0.1035 -10.7034 -3.0094 26 1 2.1963 -10.5448 -2.2577 27 6 1.8255 -6.4315 1.4682 28 6 1.6484 -1.9584 1.3808 29 8 0.9622 -2.4856 0.5309 30 1 -0.3634 0.3986 0.9472 31 1 -0.3632 0.6210 -0.8188 32 1 -0.3633 -1.0196 -0.1286 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8901 35 1 1.6766 1.9564 0.8899 36 1 1.6767 -1.7490 -1.2491 37 1 1.6768 -0.2075 -2.1392 38 1 3.1301 -0.7209 -1.2493 39 1 3.8900 0.0838 1.7057 40 1 2.4997 1.0677 2.2158 41 1 1.9324 -0.5084 3.9637 42 1 3.6750 -0.1580 4.1018 43 1 3.3688 -2.5771 4.2700 44 1 4.1196 -2.2210 2.6934 45 1 -0.2089 -5.4547 3.2001 46 1 -0.0314 -3.7796 2.6173 47 1 -0.5779 -4.4747 0.3253 48 1 -1.8567 -5.0495 1.4229 49 1 -1.1925 -6.8409 -0.1451 50 1 -0.7520 -7.2770 1.5232 51 1 -0.9242 -8.2643 -2.6337 52 1 2.8672 -6.4358 1.1474 53 1 1.6791 -7.1823 2.2448 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000898581084.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:04 Heat of formation + Delta-G solvation = -93.575627 kcal Electronic energy + Delta-G solvation = -32183.852689 eV Core-core repulsion = 28247.288738 eV Total energy + Delta-G solvation = -3936.563951 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.37684 -40.78104 -38.52586 -37.82067 -36.80098 -35.38110 -33.19154 -32.69519 -31.90126 -30.81613 -28.65289 -28.23996 -27.14094 -26.45518 -25.17627 -23.77185 -23.37891 -22.05711 -21.12557 -19.94741 -19.21884 -18.68574 -18.07220 -17.81545 -17.24397 -16.91244 -16.61948 -16.21599 -15.86755 -15.37992 -15.26324 -15.11357 -14.91535 -14.65598 -14.56599 -14.47332 -14.28882 -14.19188 -13.70118 -13.61385 -13.22591 -13.17689 -13.06042 -12.87740 -12.85380 -12.68501 -12.62833 -12.50221 -12.39801 -12.12512 -12.01664 -11.94384 -11.85641 -11.77662 -11.72521 -11.59653 -11.30086 -10.92441 -10.73778 -10.44588 -10.37309 -9.59578 -9.49975 -8.11147 -6.28216 1.24040 1.38927 1.41543 1.49081 1.65077 2.09159 2.15905 2.42530 3.14459 3.34339 3.49369 3.69317 3.77990 3.94806 3.97813 4.00985 4.12062 4.14190 4.22720 4.27994 4.36696 4.46597 4.51072 4.58559 4.61383 4.66664 4.67909 4.76950 4.81456 4.81898 4.84683 4.87033 4.96284 4.97591 5.01795 5.03966 5.08293 5.10347 5.22912 5.28394 5.33081 5.36141 5.42706 5.45703 5.57332 5.60219 5.73013 5.92159 6.11520 6.31301 6.48445 6.52179 6.81602 7.11582 7.20805 7.40003 8.92536 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.016143 B = 0.003545 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.133358 B = 7895.644691 C = 8616.940683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.162 3.838 3 C -0.145 4.145 4 C -0.163 4.163 5 N -0.589 5.589 6 C 0.096 3.904 7 C -0.123 4.123 8 C -0.106 4.106 9 C -0.120 4.120 10 H 0.147 0.853 11 C 0.521 3.479 12 O -0.590 6.590 13 N -0.594 5.594 14 C 0.119 3.881 15 C -0.122 4.122 16 C -0.101 4.101 17 C 0.046 3.954 18 H -0.025 1.025 19 C -0.541 4.541 20 H 0.055 0.945 21 C 0.015 3.985 22 N -0.915 5.915 23 Si 0.959 3.041 24 H -0.264 1.264 25 H -0.282 1.282 26 H -0.276 1.276 27 C 0.132 3.868 28 C 0.518 3.482 29 O -0.558 6.558 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.046 0.954 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.038 0.962 37 H 0.075 0.925 38 H 0.046 0.954 39 H 0.067 0.933 40 H 0.114 0.886 41 H 0.089 0.911 42 H 0.119 0.881 43 H 0.091 0.909 44 H 0.059 0.941 45 H 0.087 0.913 46 H 0.097 0.903 47 H 0.041 0.959 48 H 0.080 0.920 49 H 0.059 0.941 50 H 0.040 0.960 51 H 0.261 0.739 52 H 0.049 0.951 53 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.943 23.487 13.259 27.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.079 3.921 3 C -0.203 4.203 4 C -0.221 4.221 5 N -0.322 5.322 6 C -0.025 4.025 7 C -0.160 4.160 8 C -0.145 4.145 9 C -0.144 4.144 10 H 0.164 0.836 11 C 0.309 3.691 12 O -0.471 6.471 13 N -0.324 5.324 14 C -0.003 4.003 15 C -0.160 4.160 16 C -0.139 4.139 17 C 0.027 3.973 18 H -0.007 1.007 19 C -0.580 4.580 20 H 0.073 0.927 21 C -0.184 4.184 22 N -0.553 5.553 23 Si 0.784 3.216 24 H -0.189 1.189 25 H -0.207 1.207 26 H -0.201 1.201 27 C 0.009 3.991 28 C 0.305 3.695 29 O -0.437 6.437 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.065 0.935 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.104 0.896 36 H 0.057 0.943 37 H 0.094 0.906 38 H 0.065 0.935 39 H 0.085 0.915 40 H 0.132 0.868 41 H 0.107 0.893 42 H 0.137 0.863 43 H 0.110 0.890 44 H 0.078 0.922 45 H 0.105 0.895 46 H 0.115 0.885 47 H 0.060 0.940 48 H 0.098 0.902 49 H 0.077 0.923 50 H 0.059 0.941 51 H 0.070 0.930 52 H 0.067 0.933 53 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.061 23.071 12.585 26.361 hybrid contribution 0.156 -1.614 -1.191 2.012 sum 2.217 21.458 11.394 24.396 Atomic orbital electron populations 1.22151 0.94179 1.02481 1.02622 1.20560 0.94510 0.93354 0.83704 1.22144 1.02022 0.91773 1.04313 1.22204 1.00303 1.01320 0.98271 1.47545 1.49374 1.10923 1.24335 1.21892 0.94215 0.97244 0.89165 1.21935 1.05125 0.92663 0.96309 1.21605 0.95016 0.96912 1.00922 1.21530 1.04185 0.90896 0.97794 0.83615 1.20556 0.84823 0.86857 0.76847 1.90619 1.20199 1.82365 1.53912 1.48225 1.09323 1.13154 1.61667 1.21961 0.79015 1.02075 0.97212 1.21887 0.99239 0.97199 0.97659 1.21386 0.98689 0.94261 0.99581 1.18800 0.92962 0.94456 0.91051 1.00730 1.21428 1.22090 0.99040 1.15400 0.92682 1.25767 0.94688 1.01734 0.96217 1.70051 1.25302 1.37930 1.22057 0.85599 0.77973 0.79995 0.78011 1.18897 1.20723 1.20098 1.21565 0.98740 0.82332 0.96416 1.19602 0.80247 0.82466 0.87216 1.90773 1.39532 1.69605 1.43782 0.91531 0.90682 0.93478 0.91205 0.90088 0.89577 0.94261 0.90643 0.93452 0.91461 0.86827 0.89280 0.86286 0.89024 0.92214 0.89485 0.88474 0.94034 0.90158 0.92271 0.94108 0.92983 0.93266 0.91435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.41 8.22 71.98 0.59 -2.82 16 2 C 0.16 3.40 1.03 3.60 0.00 3.40 16 3 C -0.15 -1.70 7.29 71.98 0.52 -1.17 16 4 C -0.16 -4.48 8.38 71.98 0.60 -3.88 16 5 N -0.59 -12.83 2.79 -779.55 -2.17 -15.00 16 6 C 0.10 1.21 5.23 86.49 0.45 1.66 16 7 C -0.12 -1.28 6.02 30.68 0.18 -1.09 16 8 C -0.11 -2.11 5.08 30.73 0.16 -1.96 16 9 C -0.12 -3.25 1.98 -12.43 -0.02 -3.27 16 10 H 0.15 3.05 6.18 -2.39 -0.01 3.03 16 11 C 0.52 20.30 6.32 87.66 0.55 20.86 16 12 O -0.59 -27.34 15.32 -3.03 -0.05 -27.38 16 13 N -0.59 -24.12 2.96 -818.04 -2.43 -26.55 16 14 C 0.12 3.95 5.75 86.51 0.50 4.45 16 15 C -0.12 -4.91 6.10 30.82 0.19 -4.73 16 16 C -0.10 -5.01 4.96 30.62 0.15 -4.86 16 17 C 0.05 2.57 2.25 -11.46 -0.03 2.55 16 18 H -0.03 -1.68 8.14 -2.39 -0.02 -1.69 16 19 C -0.54 -31.87 8.56 25.60 0.22 -31.65 16 20 H 0.05 3.16 7.74 -2.91 -0.02 3.13 16 21 C 0.01 0.87 5.30 84.66 0.45 1.32 16 22 N -0.91 -55.71 11.32 21.45 0.24 -55.47 16 23 Si 0.96 45.56 29.54 68.60 2.03 47.59 16 24 H -0.26 -11.94 7.11 99.48 0.71 -11.24 16 25 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 26 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 27 C 0.13 6.35 5.64 86.36 0.49 6.84 16 28 C 0.52 15.41 6.37 87.71 0.56 15.97 16 29 O -0.56 -21.59 10.38 -3.06 -0.03 -21.62 16 30 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.05 1.42 6.12 -2.39 -0.01 1.41 16 33 H 0.07 0.75 7.60 -2.39 -0.02 0.73 16 34 H 0.08 0.82 8.14 -2.39 -0.02 0.81 16 35 H 0.09 0.64 6.80 -2.39 -0.02 0.62 16 36 H 0.04 1.47 5.95 -2.39 -0.01 1.46 16 37 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 38 H 0.05 1.28 8.14 -2.38 -0.02 1.26 16 39 H 0.07 0.86 8.06 -2.39 -0.02 0.84 16 40 H 0.11 0.73 6.00 -2.39 -0.01 0.71 16 41 H 0.09 0.71 8.12 -2.39 -0.02 0.69 16 42 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 43 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 44 H 0.06 1.52 7.45 -2.39 -0.02 1.51 16 45 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 46 H 0.10 2.64 5.19 -2.39 -0.01 2.63 16 47 H 0.04 1.94 7.31 -2.39 -0.02 1.92 16 48 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 49 H 0.06 3.35 6.05 -2.38 -0.01 3.33 16 50 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 51 H 0.26 15.09 8.31 -92.70 -0.77 14.32 16 52 H 0.05 2.59 7.04 -2.39 -0.02 2.57 16 53 H 0.07 3.03 8.14 -2.38 -0.02 3.01 16 Total: -1.00 -80.90 389.71 4.05 -76.86 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: 0.88 Total: 19.96 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: 5.57 Total: 1.62 kcal Atomic # 7 Polarization: -92.66 SS G_CDS: -4.36 Total: -97.02 kcal Atomic # 8 Polarization: -48.92 SS G_CDS: -0.08 Total: -49.00 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -80.90 4.05 -76.86 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898581084.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.719 kcal (2) G-P(sol) polarization free energy of solvation -80.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds