Wall clock time and date at job start Tue Mar 31 2020 19:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50704 * 119.99648 * 2 1 4 4 C 1.50699 * 120.00488 * 179.97438 * 2 1 3 5 5 H 1.09004 * 110.32777 * 127.01259 * 4 2 1 6 6 O 1.44422 * 110.46555 * 4.70161 * 4 2 1 7 7 C 1.44418 * 105.27448 * 200.60702 * 6 4 2 8 8 C 1.54790 * 104.85858 * 40.46211 * 7 6 4 9 9 C 1.54471 * 110.37512 * 249.26318 * 4 2 1 10 10 H 1.09002 * 110.51272 * 261.70445 * 9 4 2 11 11 C 1.50702 * 110.51106 * 24.27382 * 9 4 2 12 12 O 1.21282 * 119.99818 * 68.29009 * 11 9 4 13 13 N 1.34776 * 120.00127 * 248.28505 * 11 9 4 14 14 C 1.46505 * 119.99855 * 179.97438 * 13 11 9 15 15 H 1.08995 * 109.45710 * 34.97866 * 14 13 11 16 16 C 1.53039 * 109.45907 * 275.00349 * 14 13 11 17 17 C 1.53199 * 109.33618 * 178.60028 * 16 14 13 18 18 N 1.46996 * 108.73800 * 54.62116 * 17 16 14 19 19 C 1.36935 * 120.61466 * 126.38765 * 18 17 16 20 20 H 1.07998 * 119.99745 * 333.70256 * 19 18 17 21 21 C 1.38808 * 120.00227 * 153.69799 * 19 18 17 22 22 N 1.31624 * 120.00114 * 343.48389 * 21 19 18 23 23 Si 1.86798 * 120.00193 * 163.48612 * 21 19 18 24 24 H 1.48494 * 109.47144 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47188 * 120.00132 * 23 21 19 26 26 H 1.48505 * 109.46756 * 240.00090 * 23 21 19 27 27 C 1.46932 * 118.75595 * 306.40878 * 18 17 16 28 28 C 1.53039 * 109.45661 * 154.93352 * 14 13 11 29 29 C 1.52995 * 109.49951 * 301.33874 * 28 14 13 30 30 C 1.53000 * 109.49679 * 61.40554 * 28 14 13 31 31 H 1.07996 * 120.00460 * 0.02562 * 1 2 3 32 32 H 1.08003 * 119.99352 * 179.97438 * 1 2 3 33 33 H 1.08993 * 109.47161 * 181.01901 * 3 2 1 34 34 H 1.09005 * 109.46988 * 301.01982 * 3 2 1 35 35 H 1.09002 * 109.47105 * 61.01677 * 3 2 1 36 36 H 1.09010 * 110.37136 * 159.34329 * 7 6 4 37 37 H 1.08998 * 110.37360 * 281.56588 * 7 6 4 38 38 H 1.08999 * 110.61316 * 217.50884 * 8 7 6 39 39 H 1.09001 * 110.56051 * 94.69904 * 8 7 6 40 40 H 0.97001 * 120.00195 * 0.02562 * 13 11 9 41 41 H 1.08999 * 109.49834 * 298.56441 * 16 14 13 42 42 H 1.08998 * 109.50155 * 58.63266 * 16 14 13 43 43 H 1.08994 * 109.58544 * 174.43890 * 17 16 14 44 44 H 1.09001 * 109.58732 * 294.86275 * 17 16 14 45 45 H 0.96999 * 120.00356 * 179.97438 * 22 21 19 46 46 H 1.08994 * 109.58476 * 293.82326 * 27 18 17 47 47 H 1.09001 * 109.58449 * 173.39734 * 27 18 17 48 48 H 1.08996 * 109.47283 * 59.99861 * 29 28 14 49 49 H 1.08999 * 109.46991 * 180.02562 * 29 28 14 50 50 H 1.08996 * 109.46989 * 299.99955 * 29 28 14 51 51 H 1.08996 * 109.47390 * 59.99737 * 30 28 14 52 52 H 1.09003 * 109.47166 * 179.97438 * 30 28 14 53 53 H 1.09002 * 109.47202 * 299.99496 * 30 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.0636 -1.3050 0.0006 5 1 2.7858 -1.3256 -0.8156 6 8 1.1483 -2.4167 -0.1098 7 6 1.8769 -3.5602 0.3875 8 6 2.6540 -3.0315 1.6173 9 6 2.7766 -1.5138 1.3549 10 1 3.8243 -1.2217 1.2840 11 6 2.0845 -0.7323 2.4419 12 8 0.9726 -1.0529 2.8051 13 7 2.7012 0.3226 3.0105 14 6 2.0282 1.0825 4.0668 15 1 1.4282 0.4057 4.6750 16 6 1.1206 2.1402 3.4347 17 6 0.3917 2.9099 4.5408 18 7 1.3889 3.4502 5.4759 19 6 1.4041 4.7842 5.7851 20 1 1.0131 5.5056 5.0830 21 6 1.9220 5.2090 7.0008 22 7 2.0956 4.3464 7.9797 23 14 2.3726 7.0049 7.2477 24 1 2.0844 7.7631 6.0039 25 1 1.5738 7.5664 8.3666 26 1 3.8185 7.1128 7.5688 27 6 2.3692 2.5324 6.0722 28 6 3.0752 1.7672 4.9484 29 6 4.0023 0.7114 5.5538 30 6 3.8958 2.7429 4.1025 31 1 -0.5401 0.9352 -0.0004 32 1 -0.5399 -0.9354 -0.0004 33 1 3.1349 1.1062 -0.0183 34 1 1.7864 1.8846 -0.8807 35 1 1.8138 1.8688 0.8990 36 1 1.1867 -4.3497 0.6851 37 1 2.5690 -3.9279 -0.3700 38 1 3.6412 -3.4902 1.6738 39 1 2.0929 -3.2166 2.5333 40 1 3.5904 0.5791 2.7198 41 1 1.7232 2.8322 2.8465 42 1 0.3903 1.6537 2.7882 43 1 -0.1793 3.7277 4.1015 44 1 -0.2805 2.2364 5.0726 45 1 2.4579 4.6432 8.8292 46 1 1.8582 1.8283 6.7287 47 1 3.1024 3.1017 6.6434 48 1 4.5022 0.1652 4.7539 49 1 4.7475 1.1994 6.1819 50 1 3.4174 0.0172 6.1572 51 1 3.2350 3.4955 3.6724 52 1 4.6411 3.2306 4.7309 53 1 4.3957 2.1979 3.3018 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941091500.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:40:02 Heat of formation + Delta-G solvation = -62.861357 kcal Electronic energy + Delta-G solvation = -32241.590691 eV Core-core repulsion = 28306.358611 eV Total energy + Delta-G solvation = -3935.232080 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.82145 -40.49108 -38.86895 -36.22736 -35.94446 -34.20375 -33.87176 -33.17678 -31.14436 -29.56095 -28.14874 -28.01031 -27.59956 -26.89908 -24.99189 -23.86385 -22.69605 -22.29417 -21.18932 -19.88916 -19.38487 -18.72143 -18.11321 -17.34843 -16.91910 -16.77424 -16.56259 -16.20972 -15.79353 -15.63486 -15.27539 -15.25015 -14.91041 -14.78458 -14.51934 -14.34242 -14.07064 -13.91967 -13.79591 -13.25214 -13.10586 -13.02103 -12.89013 -12.86819 -12.69420 -12.60214 -12.55802 -12.39571 -12.30802 -12.24700 -12.10538 -11.90101 -11.81964 -11.72756 -11.59690 -11.27696 -11.14152 -10.81078 -10.57917 -10.52454 -9.95956 -9.77253 -8.68307 -7.84470 -5.28977 1.30301 1.47023 1.49559 1.59462 1.75232 2.26859 2.52600 2.90897 3.30302 3.45018 3.64361 3.73723 3.78245 3.88527 4.03721 4.05944 4.14828 4.22352 4.28222 4.32691 4.37519 4.40626 4.47566 4.58333 4.64407 4.66886 4.71964 4.83465 4.85326 4.87058 4.88745 4.92234 5.00717 5.02228 5.05289 5.06332 5.13122 5.13820 5.20503 5.29716 5.34600 5.38749 5.46612 5.62544 5.64761 5.67707 5.74060 5.77758 5.79398 6.12037 6.40614 6.73433 7.16763 7.44534 7.86635 8.38989 9.21752 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.021749 B = 0.003308 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.118202 B = 8461.651996 C = 8954.324727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.144 4.144 3 C -0.116 4.116 4 C 0.129 3.871 5 H 0.115 0.885 6 O -0.390 6.390 7 C 0.044 3.956 8 C -0.137 4.137 9 C -0.133 4.133 10 H 0.140 0.860 11 C 0.524 3.476 12 O -0.576 6.576 13 N -0.704 5.704 14 C 0.181 3.819 15 H 0.043 0.957 16 C -0.120 4.120 17 C 0.143 3.857 18 N -0.602 5.602 19 C -0.253 4.253 20 H 0.067 0.933 21 C -0.049 4.049 22 N -0.936 5.936 23 Si 0.964 3.036 24 H -0.266 1.266 25 H -0.298 1.298 26 H -0.288 1.288 27 C 0.194 3.806 28 C -0.087 4.087 29 C -0.128 4.128 30 C -0.118 4.118 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.061 0.939 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.118 0.882 39 H 0.058 0.942 40 H 0.410 0.590 41 H 0.076 0.924 42 H 0.053 0.947 43 H 0.055 0.945 44 H -0.003 1.003 45 H 0.249 0.751 46 H -0.021 1.021 47 H 0.068 0.932 48 H 0.079 0.921 49 H 0.054 0.946 50 H 0.036 0.964 51 H 0.051 0.949 52 H 0.041 0.959 53 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.134 -13.184 -18.401 24.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.144 4.144 3 C -0.172 4.172 4 C 0.071 3.929 5 H 0.132 0.868 6 O -0.310 6.310 7 C -0.032 4.032 8 C -0.175 4.175 9 C -0.155 4.155 10 H 0.158 0.842 11 C 0.311 3.689 12 O -0.455 6.455 13 N -0.356 5.356 14 C 0.075 3.925 15 H 0.062 0.938 16 C -0.160 4.160 17 C 0.016 3.984 18 N -0.325 5.325 19 C -0.383 4.383 20 H 0.085 0.915 21 C -0.244 4.244 22 N -0.583 5.583 23 Si 0.793 3.207 24 H -0.191 1.191 25 H -0.225 1.225 26 H -0.215 1.215 27 C 0.067 3.933 28 C -0.089 4.089 29 C -0.185 4.185 30 C -0.176 4.176 31 H 0.112 0.888 32 H 0.105 0.895 33 H 0.103 0.897 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.108 0.892 37 H 0.109 0.891 38 H 0.136 0.864 39 H 0.076 0.924 40 H 0.247 0.753 41 H 0.095 0.905 42 H 0.071 0.929 43 H 0.074 0.926 44 H 0.015 0.985 45 H 0.058 0.942 46 H -0.003 1.003 47 H 0.086 0.914 48 H 0.097 0.903 49 H 0.073 0.927 50 H 0.055 0.945 51 H 0.070 0.930 52 H 0.061 0.939 53 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 8.169 -13.355 -18.075 23.912 hybrid contribution -0.139 1.051 1.111 1.536 sum 8.029 -12.304 -16.964 22.442 Atomic orbital electron populations 1.23566 0.96404 1.01146 1.00005 1.21747 0.95557 0.95234 1.01858 1.20874 1.00786 0.93020 1.02558 1.21867 0.90453 0.85419 0.95173 0.86756 1.89142 1.38492 1.18253 1.85108 1.23624 0.95864 0.88981 0.94778 1.22997 1.03055 0.91965 0.99462 1.22829 1.02477 0.96688 0.93456 0.84243 1.20689 0.85761 0.80116 0.82299 1.90702 1.21421 1.69380 1.63999 1.46079 1.20684 1.30399 1.38464 1.20462 0.92941 0.91238 0.87812 0.93849 1.22192 0.98619 0.97426 0.97795 1.20980 0.91018 0.95591 0.90781 1.44302 1.32244 1.04828 1.51085 1.19520 1.36765 0.83634 0.98369 0.91502 1.25700 1.02935 1.01083 0.94718 1.70189 1.49971 1.35033 1.03099 0.85252 0.77253 0.80709 0.77515 1.19070 1.22500 1.21474 1.20660 0.91171 0.90027 0.91403 1.21324 0.95295 0.95867 0.96390 1.21708 0.98552 0.97477 1.00803 1.21653 0.98686 0.98378 0.98849 0.88820 0.89453 0.89652 0.90660 0.92066 0.89190 0.89142 0.86371 0.92357 0.75261 0.90515 0.92871 0.92611 0.98461 0.94209 1.00320 0.91372 0.90266 0.92733 0.94470 0.93032 0.93938 0.90698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.70 13.46 67.78 0.91 -3.79 16 2 C -0.14 -3.18 3.80 -16.49 -0.06 -3.25 16 3 C -0.12 -2.05 9.54 71.24 0.68 -1.37 16 4 C 0.13 2.38 3.47 30.35 0.11 2.49 16 5 H 0.12 1.40 8.14 -2.38 -0.02 1.38 16 6 O -0.39 -9.10 9.82 -148.98 -1.46 -10.57 16 7 C 0.04 0.69 7.64 72.59 0.55 1.25 16 8 C -0.14 -2.14 6.63 31.72 0.21 -1.93 16 9 C -0.13 -2.24 3.37 -10.53 -0.04 -2.28 16 10 H 0.14 1.19 8.01 -2.39 -0.02 1.17 16 11 C 0.52 13.62 4.74 87.66 0.42 14.04 16 12 O -0.58 -21.13 15.69 -3.04 -0.05 -21.18 16 13 N -0.70 -16.89 4.20 -442.40 -1.86 -18.75 16 14 C 0.18 5.98 1.57 45.02 0.07 6.05 16 15 H 0.04 1.77 7.57 -2.39 -0.02 1.75 16 16 C -0.12 -4.23 4.43 30.67 0.14 -4.09 16 17 C 0.14 6.23 6.52 86.35 0.56 6.79 16 18 N -0.60 -29.86 2.44 -698.91 -1.71 -31.57 16 19 C -0.25 -13.64 9.61 84.03 0.81 -12.83 16 20 H 0.07 3.53 7.87 -2.91 -0.02 3.51 16 21 C -0.05 -2.72 4.95 84.86 0.42 -2.30 16 22 N -0.94 -54.89 11.03 21.65 0.24 -54.65 16 23 Si 0.96 44.28 29.58 68.60 2.03 46.31 16 24 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 25 H -0.30 -13.90 7.11 99.48 0.71 -13.20 16 26 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 27 C 0.19 9.15 4.00 86.36 0.35 9.50 16 28 C -0.09 -2.95 0.56 -52.11 -0.03 -2.98 16 29 C -0.13 -3.70 8.31 71.98 0.60 -3.11 16 30 C -0.12 -3.56 7.83 71.98 0.56 -3.00 16 31 H 0.09 2.44 8.05 -2.91 -0.02 2.42 16 32 H 0.09 2.67 6.90 -2.91 -0.02 2.65 16 33 H 0.08 1.02 8.00 -2.39 -0.02 1.00 16 34 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 35 H 0.06 1.32 6.59 -2.39 -0.02 1.30 16 36 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 37 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.06 1.28 7.35 -2.39 -0.02 1.26 16 40 H 0.41 7.10 6.56 -92.71 -0.61 6.49 16 41 H 0.08 2.51 5.76 -2.39 -0.01 2.49 16 42 H 0.05 1.90 8.12 -2.39 -0.02 1.88 16 43 H 0.06 2.37 7.93 -2.39 -0.02 2.35 16 44 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 45 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 46 H -0.02 -1.14 8.14 -2.39 -0.02 -1.16 16 47 H 0.07 3.63 5.89 -2.39 -0.01 3.62 16 48 H 0.08 1.72 7.36 -2.39 -0.02 1.70 16 49 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 50 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 51 H 0.05 1.77 5.98 -2.39 -0.01 1.75 16 52 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 53 H 0.07 1.56 6.58 -2.39 -0.02 1.54 16 Total: -1.00 -72.54 398.77 3.73 -68.81 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: 0.28 Total: 22.40 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: 6.25 Total: -0.81 kcal Atomic # 7 Polarization: -101.64 SS G_CDS: -3.33 Total: -104.97 kcal Atomic # 8 Polarization: -30.23 SS G_CDS: -1.51 Total: -31.74 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -72.54 3.73 -68.81 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941091500.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.949 kcal (2) G-P(sol) polarization free energy of solvation -72.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds