Wall clock time and date at job start Tue Mar 31 2020 21:21:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47114 * 2 1 4 4 H 1.08999 * 110.35656 * 52.85437 * 3 2 1 5 5 C 1.54949 * 110.30819 * 174.99547 * 3 2 1 6 6 C 1.55306 * 100.93968 * 155.36033 * 5 3 2 7 7 C 1.54387 * 102.25523 * 325.86617 * 6 5 3 8 8 H 1.08998 * 109.82889 * 261.84867 * 7 6 5 9 9 C 1.50698 * 109.83178 * 140.86791 * 7 6 5 10 10 O 1.21273 * 120.00415 * 245.00392 * 9 7 6 11 11 N 1.34786 * 119.99639 * 65.00290 * 9 7 6 12 12 C 1.43507 * 122.54359 * 359.71329 * 11 9 7 13 13 C 1.48650 * 114.44007 * 124.08370 * 12 11 9 14 14 C 1.51160 * 113.44122 * 81.65595 * 13 12 11 15 15 H 1.09002 * 110.22159 * 33.67724 * 14 13 12 16 16 C 1.53395 * 110.93326 * 156.73951 * 14 13 12 17 17 N 1.46621 * 108.10421 * 102.75089 * 16 14 13 18 18 C 1.36944 * 125.32174 * 178.64116 * 17 16 14 19 19 H 1.07995 * 119.99560 * 359.97438 * 18 17 16 20 20 C 1.38808 * 119.99857 * 180.02562 * 18 17 16 21 21 N 1.31619 * 120.00250 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99980 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47250 * 89.99486 * 22 20 18 24 24 H 1.48497 * 109.46865 * 209.99329 * 22 20 18 25 25 H 1.48499 * 109.46851 * 329.99425 * 22 20 18 26 26 C 1.48157 * 109.78825 * 359.47011 * 17 16 14 27 27 C 1.54046 * 106.18229 * 16.88504 * 26 17 16 28 28 H 1.08997 * 110.62081 * 92.91657 * 27 26 17 29 29 C 1.51852 * 109.44450 * 214.94092 * 27 26 17 30 30 C 1.49553 * 122.54285 * 179.97438 * 11 9 7 31 31 O 1.43243 * 107.58660 * 21.35629 * 7 6 5 32 32 H 1.08998 * 109.47597 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47493 * 300.00607 * 1 2 3 34 34 H 1.09002 * 109.46638 * 60.00244 * 1 2 3 35 35 H 1.09000 * 109.47040 * 239.99620 * 2 1 3 36 36 H 1.09002 * 109.46638 * 119.99755 * 2 1 3 37 37 H 1.08996 * 111.12558 * 37.44467 * 5 3 2 38 38 H 1.09003 * 111.15952 * 273.29214 * 5 3 2 39 39 H 1.09002 * 110.84953 * 207.68170 * 6 5 3 40 40 H 1.08994 * 111.02656 * 84.13701 * 6 5 3 41 41 H 1.08996 * 108.52637 * 244.18662 * 12 11 9 42 42 H 1.09000 * 108.52779 * 1.71272 * 12 11 9 43 43 H 1.09011 * 108.19568 * 320.59011 * 13 12 11 44 44 H 1.09005 * 108.14334 * 202.68749 * 13 12 11 45 45 H 1.09003 * 109.74783 * 222.41556 * 16 14 13 46 46 H 1.08995 * 109.75097 * 343.08009 * 16 14 13 47 47 H 0.96998 * 120.00367 * 179.97438 * 21 20 18 48 48 H 1.08994 * 109.66037 * 258.11870 * 26 17 16 49 49 H 1.09000 * 111.01220 * 136.38028 * 26 17 16 50 50 H 1.08999 * 109.01094 * 54.29124 * 29 27 26 51 51 H 1.09006 * 108.94204 * 295.46701 * 29 27 26 52 52 H 1.08996 * 110.26303 * 9.14947 * 30 11 9 53 53 H 1.09004 * 110.26033 * 131.09914 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5846 2.0057 0.8146 5 6 3.5841 1.4670 0.1268 6 6 3.9116 2.8384 -0.5244 7 6 2.8321 2.9457 -1.6229 8 1 3.2494 2.6402 -2.5824 9 6 2.3304 4.3640 -1.7098 10 8 1.1783 4.6180 -1.4288 11 7 3.1621 5.3503 -2.0999 12 6 4.5361 5.1125 -2.4392 13 6 4.9229 5.5746 -3.7980 14 6 5.2307 7.0530 -3.8655 15 1 5.6852 7.3861 -2.9324 16 6 6.1423 7.3692 -5.0580 17 7 5.3170 7.9527 -6.1202 18 6 5.7798 8.3889 -7.3330 19 1 6.8314 8.3162 -7.5675 20 6 4.8972 8.9254 -8.2604 21 7 3.6156 9.0145 -7.9743 22 14 5.5286 9.5212 -9.9145 23 1 5.4870 8.4039 -10.8917 24 1 4.6735 10.6344 -10.3989 25 1 6.9270 9.9987 -9.7677 26 6 3.9044 8.0196 -5.6783 27 6 3.9254 7.8553 -4.1468 28 1 3.9603 8.8283 -3.6568 29 6 2.6969 7.0800 -3.7046 30 6 2.7246 6.7764 -2.2067 31 8 1.7571 2.0713 -1.2601 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3634 0.5139 0.8899 34 1 -0.3633 0.5138 -0.8900 35 1 1.8934 -0.5139 -0.8900 36 1 1.8933 -0.5138 0.8900 37 1 4.0372 0.6484 -0.4325 38 1 3.8935 1.4443 1.1717 39 1 4.9102 2.8318 -0.9613 40 1 3.8115 3.6482 0.1982 41 1 5.1660 5.6382 -1.7216 42 1 4.7346 4.0443 -2.3516 43 1 4.1022 5.3515 -4.4799 44 1 5.8046 5.0140 -4.1090 45 1 6.9106 8.0809 -4.7557 46 1 6.6104 6.4527 -5.4169 47 1 2.9989 9.3898 -8.6222 48 1 3.3393 7.2056 -6.1322 49 1 3.4568 8.9773 -5.9438 50 1 2.6521 6.1410 -4.2563 51 1 1.8072 7.6675 -3.9314 52 1 1.7300 6.8992 -1.7782 53 1 3.4363 7.4285 -1.7002 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000946615741.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:54 Heat of formation + Delta-G solvation = -73.984954 kcal Electronic energy + Delta-G solvation = -30851.242118 eV Core-core repulsion = 26915.527683 eV Total energy + Delta-G solvation = -3935.714435 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.90728 -40.60357 -39.28591 -37.30824 -34.98692 -34.57209 -33.78956 -33.02472 -32.37292 -30.17516 -28.95259 -28.65000 -26.23280 -25.17581 -24.23094 -23.57208 -22.66381 -21.99699 -21.85247 -20.41875 -19.68035 -18.92454 -18.72470 -17.52409 -17.27661 -17.00998 -16.84040 -16.28098 -15.99297 -15.42474 -15.19629 -15.03841 -14.90593 -14.64638 -14.38740 -14.30104 -14.21466 -13.87305 -13.80174 -13.66000 -13.39279 -13.07792 -12.98015 -12.82583 -12.76279 -12.68374 -12.48607 -12.43578 -12.34114 -12.08258 -11.97561 -11.82308 -11.75785 -11.71176 -11.49507 -11.39875 -11.16006 -11.06191 -10.98682 -10.70639 -10.27904 -9.66230 -8.85563 -7.79704 -5.19862 1.44479 1.46413 1.51378 1.55209 1.84864 2.49563 2.83696 3.32639 3.38825 3.52012 3.68635 3.68795 3.76017 3.81423 3.97234 4.01013 4.09007 4.14686 4.19324 4.21921 4.25864 4.35205 4.46970 4.48475 4.54333 4.66143 4.68308 4.72159 4.76243 4.83155 4.85535 4.94794 4.95419 4.99005 5.04124 5.07274 5.09680 5.12922 5.14399 5.15701 5.25435 5.28227 5.29897 5.42148 5.47458 5.52928 5.63755 5.76016 5.86097 5.99581 6.26633 6.51330 7.11337 7.12818 7.81687 8.44311 9.25155 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.023453 B = 0.002404 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.575428 B =11644.364858 C =11769.987187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.116 4.116 3 C 0.064 3.936 4 H 0.057 0.943 5 C -0.139 4.139 6 C -0.140 4.140 7 C 0.064 3.936 8 H 0.118 0.882 9 C 0.501 3.499 10 O -0.581 6.581 11 N -0.602 5.602 12 C 0.105 3.895 13 C -0.126 4.126 14 C -0.075 4.075 15 H 0.106 0.894 16 C 0.137 3.863 17 N -0.629 5.629 18 C -0.237 4.237 19 H 0.082 0.918 20 C -0.072 4.072 21 N -0.953 5.953 22 Si 0.978 3.022 23 H -0.288 1.288 24 H -0.296 1.296 25 H -0.266 1.266 26 C 0.183 3.817 27 C -0.097 4.097 28 H 0.073 0.927 29 C -0.114 4.114 30 C 0.122 3.878 31 O -0.379 6.379 32 H 0.067 0.933 33 H 0.051 0.949 34 H 0.035 0.965 35 H 0.071 0.929 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.108 0.892 39 H 0.125 0.875 40 H 0.079 0.921 41 H 0.092 0.908 42 H 0.105 0.895 43 H 0.043 0.957 44 H 0.092 0.908 45 H 0.024 0.976 46 H 0.028 0.972 47 H 0.244 0.756 48 H -0.021 1.021 49 H 0.044 0.956 50 H 0.055 0.945 51 H 0.051 0.949 52 H 0.074 0.926 53 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.210 -16.887 21.659 27.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.153 4.153 3 C 0.007 3.993 4 H 0.075 0.925 5 C -0.177 4.177 6 C -0.177 4.177 7 C 0.003 3.997 8 H 0.135 0.865 9 C 0.291 3.709 10 O -0.460 6.460 11 N -0.336 5.336 12 C -0.017 4.017 13 C -0.164 4.164 14 C -0.093 4.093 15 H 0.124 0.876 16 C 0.012 3.988 17 N -0.356 5.356 18 C -0.366 4.366 19 H 0.100 0.900 20 C -0.264 4.264 21 N -0.603 5.603 22 Si 0.806 3.194 23 H -0.215 1.215 24 H -0.223 1.223 25 H -0.191 1.191 26 C 0.058 3.942 27 C -0.116 4.116 28 H 0.092 0.908 29 C -0.152 4.152 30 C 0.000 4.000 31 O -0.298 6.298 32 H 0.086 0.914 33 H 0.071 0.929 34 H 0.054 0.946 35 H 0.090 0.910 36 H 0.119 0.881 37 H 0.117 0.883 38 H 0.126 0.874 39 H 0.144 0.856 40 H 0.098 0.902 41 H 0.110 0.890 42 H 0.123 0.877 43 H 0.062 0.938 44 H 0.110 0.890 45 H 0.042 0.958 46 H 0.046 0.954 47 H 0.054 0.946 48 H -0.003 1.003 49 H 0.062 0.938 50 H 0.073 0.927 51 H 0.070 0.930 52 H 0.093 0.907 53 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 3.358 -16.762 21.531 27.492 hybrid contribution -0.403 0.983 -1.722 2.023 sum 2.955 -15.779 19.809 25.497 Atomic orbital electron populations 1.21741 0.96290 1.01881 1.01152 1.21671 0.96052 0.93784 1.03812 1.23351 0.96378 0.94295 0.85278 0.92456 1.23340 0.93384 0.97140 1.03808 1.23248 0.99020 0.99076 0.96366 1.22781 0.88611 0.86022 1.02320 0.86460 1.21576 0.85169 0.88216 0.75981 1.90664 1.19832 1.84244 1.51304 1.48114 1.12463 1.07556 1.65481 1.20469 0.81144 1.03588 0.96538 1.20877 1.02268 0.95423 0.97843 1.21745 0.94308 0.95266 0.98024 0.87621 1.21352 0.93460 0.95607 0.88333 1.44933 1.04594 1.72049 1.13978 1.19488 0.93409 1.32447 0.91262 0.89981 1.25662 0.95832 1.02608 1.02336 1.70186 1.02566 1.52175 1.35336 0.85076 0.77585 0.77207 0.79486 1.21518 1.22259 1.19089 1.21332 0.84939 0.98143 0.89757 1.22256 0.94783 0.98570 0.96036 0.90845 1.21699 0.97410 0.99877 0.96256 1.22159 1.01628 0.81088 0.95083 1.88532 1.43357 1.58706 1.39203 0.91390 0.92949 0.94614 0.91016 0.88130 0.88287 0.87400 0.85640 0.90204 0.89010 0.87651 0.93840 0.88975 0.95769 0.95420 0.94648 1.00328 0.93790 0.92688 0.92977 0.90734 0.87632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 9.85 71.98 0.71 -1.82 16 2 C -0.12 -1.56 5.66 30.59 0.17 -1.39 16 3 C 0.06 1.08 3.40 31.26 0.11 1.18 16 4 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 5 C -0.14 -1.30 6.57 32.05 0.21 -1.08 16 6 C -0.14 -1.56 5.40 31.86 0.17 -1.38 16 7 C 0.06 1.30 3.08 30.32 0.09 1.39 16 8 H 0.12 2.06 7.67 -2.39 -0.02 2.05 16 9 C 0.50 13.94 7.02 87.65 0.62 14.55 16 10 O -0.58 -22.05 16.20 15.79 0.26 -21.80 16 11 N -0.60 -14.16 2.61 -829.57 -2.16 -16.33 16 12 C 0.11 1.78 5.16 85.56 0.44 2.22 16 13 C -0.13 -3.00 4.56 28.62 0.13 -2.87 16 14 C -0.07 -2.15 2.80 -10.30 -0.03 -2.18 16 15 H 0.11 2.32 7.71 -2.39 -0.02 2.30 16 16 C 0.14 5.26 6.83 86.49 0.59 5.85 16 17 N -0.63 -32.29 3.41 -694.65 -2.37 -34.66 16 18 C -0.24 -13.37 10.25 84.03 0.86 -12.51 16 19 H 0.08 4.40 7.83 -2.91 -0.02 4.38 16 20 C -0.07 -4.18 5.48 84.86 0.47 -3.71 16 21 N -0.95 -58.68 10.15 21.65 0.22 -58.47 16 22 Si 0.98 46.48 29.55 68.60 2.03 48.51 16 23 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 24 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 25 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 26 C 0.18 9.15 5.14 86.41 0.44 9.59 16 27 C -0.10 -3.43 2.89 -9.86 -0.03 -3.46 16 28 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 29 C -0.11 -3.69 4.50 30.17 0.14 -3.55 16 30 C 0.12 3.14 6.15 85.74 0.53 3.67 16 31 O -0.38 -9.57 10.01 -130.19 -1.30 -10.87 16 32 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.03 0.78 7.99 -2.39 -0.02 0.76 16 35 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.10 0.66 8.06 -2.39 -0.02 0.64 16 38 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.13 0.63 6.92 -2.39 -0.02 0.62 16 40 H 0.08 0.98 7.84 -2.39 -0.02 0.96 16 41 H 0.09 1.11 7.67 -2.39 -0.02 1.10 16 42 H 0.11 1.19 4.35 -2.39 -0.01 1.18 16 43 H 0.04 1.36 5.88 -2.38 -0.01 1.34 16 44 H 0.09 1.89 7.53 -2.38 -0.02 1.87 16 45 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 46 H 0.03 1.03 7.40 -2.39 -0.02 1.02 16 47 H 0.24 14.69 8.31 -92.71 -0.77 13.92 16 48 H -0.02 -1.20 7.72 -2.39 -0.02 -1.22 16 49 H 0.04 2.55 6.32 -2.39 -0.02 2.53 16 50 H 0.05 2.00 5.54 -2.39 -0.01 1.98 16 51 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 52 H 0.07 2.14 7.31 -2.39 -0.02 2.12 16 53 H 0.11 2.17 7.80 -2.38 -0.02 2.15 16 Total: -1.00 -79.79 391.11 3.16 -76.63 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: 0.88 Total: 12.49 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: 5.62 Total: 4.49 kcal Atomic # 7 Polarization: -105.14 SS G_CDS: -4.31 Total: -109.45 kcal Atomic # 8 Polarization: -31.62 SS G_CDS: -1.05 Total: -32.67 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.51 kcal Total: -79.79 3.16 -76.63 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000946615741.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.642 kcal (2) G-P(sol) polarization free energy of solvation -79.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds