Wall clock time and date at job start Tue Mar 31 2020 19:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50697 * 119.99670 * 2 1 4 4 C 1.50699 * 120.00052 * 179.97438 * 2 1 3 5 5 H 1.09004 * 110.41613 * 126.47960 * 4 2 1 6 6 O 1.44420 * 110.37443 * 4.17345 * 4 2 1 7 7 C 1.44420 * 105.27808 * 200.65540 * 6 4 2 8 8 C 1.54482 * 104.80283 * 40.50784 * 7 6 4 9 9 C 1.54484 * 110.37439 * 248.78942 * 4 2 1 10 10 H 1.09000 * 110.62754 * 261.51372 * 9 4 2 11 11 C 1.50697 * 110.50799 * 24.16981 * 9 4 2 12 12 O 1.21276 * 120.00402 * 52.87096 * 11 9 4 13 13 N 1.34782 * 119.99809 * 232.60146 * 11 9 4 14 14 C 1.46495 * 119.99588 * 355.75212 * 13 11 9 15 15 C 1.46501 * 119.99920 * 175.76229 * 13 11 9 16 16 H 1.08996 * 109.20171 * 0.63077 * 15 13 11 17 17 C 1.50127 * 109.21039 * 119.99546 * 15 13 11 18 18 C 1.52523 * 105.41674 * 218.02115 * 17 15 13 19 19 C 1.46237 * 114.27836 * 270.59555 * 18 17 15 20 20 N 1.50167 * 107.53262 * 58.41177 * 19 18 17 21 21 C 1.36932 * 120.54340 * 109.56344 * 20 19 18 22 22 H 1.08001 * 120.00446 * 154.89073 * 21 20 19 23 23 C 1.38815 * 119.99848 * 334.89639 * 21 20 19 24 24 N 1.31612 * 119.99960 * 345.42696 * 23 21 20 25 25 Si 1.86805 * 119.99914 * 165.42345 * 23 21 20 26 26 H 1.48505 * 109.46940 * 90.00158 * 25 23 21 27 27 H 1.48497 * 109.47089 * 209.99745 * 25 23 21 28 28 H 1.48499 * 109.47223 * 330.00092 * 25 23 21 29 29 C 1.43436 * 118.91989 * 289.58587 * 20 19 18 30 30 C 1.54845 * 109.20507 * 241.31951 * 15 13 11 31 31 H 1.07995 * 120.00707 * 0.02562 * 1 2 3 32 32 H 1.08004 * 119.99747 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47121 * 184.22120 * 3 2 1 34 34 H 1.09001 * 109.47299 * 304.21543 * 3 2 1 35 35 H 1.08998 * 109.47807 * 64.21986 * 3 2 1 36 36 H 1.09007 * 110.37190 * 281.68090 * 7 6 4 37 37 H 1.08996 * 110.37470 * 159.34542 * 7 6 4 38 38 H 1.09002 * 110.51222 * 217.37667 * 8 7 6 39 39 H 1.09007 * 110.50573 * 94.66531 * 8 7 6 40 40 H 1.09005 * 109.46901 * 84.62204 * 14 13 11 41 41 H 1.09004 * 109.47031 * 204.61256 * 14 13 11 42 42 H 1.08990 * 109.47751 * 324.61316 * 14 13 11 43 43 H 1.09004 * 110.24718 * 337.00027 * 17 15 13 44 44 H 1.08999 * 110.24813 * 99.04852 * 17 15 13 45 45 H 1.09003 * 108.51991 * 31.84270 * 18 17 15 46 46 H 1.09004 * 108.52315 * 149.50866 * 18 17 15 47 47 H 1.09007 * 109.83982 * 177.91373 * 19 18 17 48 48 H 1.08990 * 109.84532 * 298.83023 * 19 18 17 49 49 H 0.96999 * 120.00184 * 180.02562 * 24 23 21 50 50 H 1.09009 * 108.15827 * 213.29054 * 29 20 19 51 51 H 1.08998 * 108.16334 * 330.06064 * 29 20 19 52 52 H 1.09000 * 109.35801 * 320.99665 * 30 15 13 53 53 H 1.08999 * 109.35786 * 80.58032 * 30 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 1 2.7796 -1.3311 -0.8208 6 8 1.1455 -2.4157 -0.0974 7 6 1.8757 -3.5580 0.4003 8 6 2.6598 -3.0245 1.6197 9 6 2.7862 -1.5083 1.3508 10 1 3.8345 -1.2204 1.2723 11 6 2.1034 -0.7203 2.4388 12 8 0.9112 -0.8461 2.6218 13 7 2.8189 0.1203 3.2123 14 6 4.2735 0.1989 3.0577 15 6 2.1418 0.9551 4.2077 16 1 1.0719 0.7486 4.1808 17 6 2.6741 0.6265 5.5724 18 6 1.4684 0.6911 6.5043 19 6 1.2231 2.0131 7.0795 20 7 1.0242 2.9719 5.9410 21 6 -0.2123 3.5020 5.6857 22 1 -0.2986 4.4495 5.1747 23 6 -1.3549 2.8215 6.0837 24 7 -1.2770 1.5570 6.4404 25 14 -3.0029 3.7005 6.1132 26 1 -3.6702 3.5454 4.7956 27 1 -3.8591 3.1117 7.1740 28 1 -2.7895 5.1432 6.3931 29 6 2.1503 3.3230 5.1250 30 6 2.3804 2.4470 3.8685 31 1 -0.5401 0.9352 -0.0004 32 1 -0.5400 -0.9354 0.0004 33 1 3.1327 1.1074 -0.0756 34 1 1.7446 1.9087 -0.8498 35 1 1.8580 1.8433 0.9253 36 1 2.5631 -3.9295 -0.3598 37 1 1.1865 -4.3447 0.7069 38 1 3.6456 -3.4866 1.6719 39 1 2.1035 -3.2041 2.5397 40 1 4.5163 0.8914 2.2516 41 1 4.7191 0.5529 3.9873 42 1 4.6675 -0.7889 2.8191 43 1 3.1028 -0.3757 5.5789 44 1 3.4224 1.3602 5.8722 45 1 0.5829 0.3863 5.9465 46 1 1.6227 -0.0156 7.3197 47 1 0.3281 1.9858 7.7010 48 1 2.0802 2.3208 7.6784 49 1 -2.0754 1.0814 6.7182 50 1 2.0258 4.3563 4.8007 51 1 3.0471 3.2690 5.7422 52 1 3.4044 2.5787 3.5188 53 1 1.6902 2.7538 3.0827 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000948849375.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:39:46 Heat of formation + Delta-G solvation = -38.927382 kcal Electronic energy + Delta-G solvation = -32550.655444 eV Core-core repulsion = 28616.461219 eV Total energy + Delta-G solvation = -3934.194225 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -41.82997 -40.19219 -38.81312 -36.64283 -35.95578 -34.51328 -33.31660 -33.28183 -31.75149 -29.62830 -28.22073 -28.07770 -27.50324 -25.87075 -25.35426 -24.17429 -22.86796 -21.67094 -20.80910 -20.00938 -19.28138 -18.62220 -18.28899 -17.28703 -17.01417 -16.78759 -16.72898 -16.32932 -16.19645 -15.63444 -15.44548 -14.98762 -14.87142 -14.71027 -14.25518 -14.15382 -13.99069 -13.96920 -13.68182 -13.56707 -13.28027 -13.19028 -13.12452 -12.99872 -12.72468 -12.67970 -12.62215 -12.34500 -12.25371 -12.14208 -11.94928 -11.90305 -11.79408 -11.61016 -11.51344 -11.21768 -11.07362 -10.79418 -10.45145 -10.43952 -9.89721 -9.37721 -8.60501 -7.81622 -5.26113 1.29145 1.42239 1.44021 1.52345 1.76797 2.17245 2.52075 2.88137 3.32483 3.41157 3.61324 3.64757 3.80791 4.01171 4.03923 4.16698 4.18480 4.22658 4.27965 4.30361 4.37077 4.44950 4.52854 4.55806 4.62766 4.66031 4.74862 4.77165 4.79184 4.80183 4.86097 4.87850 4.91679 4.97323 5.00960 5.05365 5.10471 5.11507 5.20729 5.28768 5.39449 5.49997 5.55130 5.60894 5.65576 5.76322 5.79231 5.88340 6.10922 6.21201 6.43769 6.65141 7.19505 7.44796 7.93210 8.41949 9.21575 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.013322 B = 0.004191 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.252824 B = 6679.695337 C = 7337.440088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.143 4.143 3 C -0.106 4.106 4 C 0.131 3.869 5 H 0.120 0.880 6 O -0.394 6.394 7 C 0.043 3.957 8 C -0.135 4.135 9 C -0.132 4.132 10 H 0.145 0.855 11 C 0.513 3.487 12 O -0.578 6.578 13 N -0.612 5.612 14 C 0.065 3.935 15 C 0.166 3.834 16 H 0.044 0.956 17 C -0.102 4.102 18 C -0.121 4.121 19 C 0.171 3.829 20 N -0.603 5.603 21 C -0.257 4.257 22 H 0.061 0.939 23 C -0.045 4.045 24 N -0.917 5.917 25 Si 0.954 3.046 26 H -0.297 1.297 27 H -0.293 1.293 28 H -0.268 1.268 29 C 0.154 3.846 30 C -0.134 4.134 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.043 0.957 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.126 0.874 39 H 0.049 0.951 40 H 0.073 0.927 41 H 0.084 0.916 42 H 0.092 0.908 43 H 0.065 0.935 44 H 0.081 0.919 45 H 0.054 0.946 46 H 0.032 0.968 47 H 0.055 0.945 48 H 0.030 0.970 49 H 0.243 0.757 50 H 0.031 0.969 51 H 0.056 0.944 52 H 0.090 0.910 53 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.339 -7.378 -11.966 23.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.143 4.143 3 C -0.162 4.162 4 C 0.073 3.927 5 H 0.137 0.863 6 O -0.313 6.313 7 C -0.034 4.034 8 C -0.173 4.173 9 C -0.154 4.154 10 H 0.162 0.838 11 C 0.302 3.698 12 O -0.457 6.457 13 N -0.345 5.345 14 C -0.076 4.076 15 C 0.062 3.938 16 H 0.062 0.938 17 C -0.141 4.141 18 C -0.160 4.160 19 C 0.048 3.952 20 N -0.325 5.325 21 C -0.388 4.388 22 H 0.079 0.921 23 C -0.241 4.241 24 N -0.564 5.564 25 Si 0.784 3.216 26 H -0.224 1.224 27 H -0.219 1.219 28 H -0.193 1.193 29 C 0.026 3.974 30 C -0.175 4.175 31 H 0.101 0.899 32 H 0.104 0.896 33 H 0.109 0.891 34 H 0.095 0.905 35 H 0.062 0.938 36 H 0.115 0.885 37 H 0.106 0.894 38 H 0.145 0.855 39 H 0.068 0.932 40 H 0.092 0.908 41 H 0.102 0.898 42 H 0.111 0.889 43 H 0.083 0.917 44 H 0.100 0.900 45 H 0.072 0.928 46 H 0.051 0.949 47 H 0.074 0.926 48 H 0.048 0.952 49 H 0.052 0.948 50 H 0.049 0.951 51 H 0.075 0.925 52 H 0.108 0.892 53 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 18.373 -7.502 -11.854 23.117 hybrid contribution -1.996 0.308 0.405 2.060 sum 16.377 -7.194 -11.449 21.238 Atomic orbital electron populations 1.23431 0.96689 1.00521 1.00260 1.21724 0.95383 0.95581 1.01589 1.20728 1.00916 0.92980 1.01606 1.21866 0.90167 0.85076 0.95546 0.86308 1.89153 1.38413 1.18493 1.85276 1.23605 0.95827 0.88951 0.94972 1.22943 1.03309 0.91926 0.99157 1.22923 1.02656 0.96562 0.93221 0.83755 1.20872 0.86805 0.79687 0.82445 1.90764 1.17854 1.66322 1.70759 1.48293 1.08977 1.40250 1.36961 1.22092 0.77914 1.03786 1.03854 1.20782 0.96072 0.89813 0.87104 0.93802 1.21268 0.97610 1.00953 0.94230 1.20760 0.98123 0.98561 0.98598 1.20055 0.97697 0.88213 0.89281 1.44374 1.05270 1.52879 1.29946 1.19378 0.84283 1.00596 1.34550 0.92089 1.25606 1.00382 0.95624 1.02486 1.70128 1.27530 1.08408 1.50289 0.85477 0.80970 0.78665 0.76514 1.22442 1.21917 1.19329 1.20528 0.90235 0.95555 0.91080 1.23099 1.00585 0.94451 0.99408 0.89945 0.89642 0.89118 0.90531 0.93778 0.88533 0.89387 0.85529 0.93211 0.90800 0.89754 0.88913 0.91665 0.90007 0.92756 0.94909 0.92633 0.95221 0.94801 0.95102 0.92548 0.89168 0.95907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.20 12.73 67.78 0.86 -5.34 16 2 C -0.14 -4.19 3.66 -16.49 -0.06 -4.26 16 3 C -0.11 -2.54 9.59 71.23 0.68 -1.86 16 4 C 0.13 3.11 3.39 30.35 0.10 3.21 16 5 H 0.12 1.90 8.14 -2.38 -0.02 1.88 16 6 O -0.39 -11.26 9.81 -148.98 -1.46 -12.72 16 7 C 0.04 0.83 7.63 72.49 0.55 1.38 16 8 C -0.14 -2.57 6.68 31.61 0.21 -2.36 16 9 C -0.13 -2.84 2.87 -10.53 -0.03 -2.87 16 10 H 0.14 1.76 5.86 -2.39 -0.01 1.75 16 11 C 0.51 16.93 4.82 87.66 0.42 17.36 16 12 O -0.58 -27.05 14.52 -3.02 -0.04 -27.09 16 13 N -0.61 -17.91 2.62 -824.27 -2.16 -20.08 16 14 C 0.06 1.06 8.44 127.77 1.08 2.14 16 15 C 0.17 6.33 2.28 44.70 0.10 6.44 16 16 H 0.04 2.36 5.57 -2.39 -0.01 2.35 16 17 C -0.10 -3.61 4.39 29.51 0.13 -3.48 16 18 C -0.12 -5.47 5.00 28.35 0.14 -5.33 16 19 C 0.17 8.14 5.24 83.58 0.44 8.58 16 20 N -0.60 -29.93 2.60 -707.84 -1.84 -31.77 16 21 C -0.26 -14.49 9.64 84.04 0.81 -13.68 16 22 H 0.06 3.41 7.86 -2.91 -0.02 3.38 16 23 C -0.05 -2.61 5.03 84.86 0.43 -2.19 16 24 N -0.92 -55.48 9.20 21.65 0.20 -55.28 16 25 Si 0.95 47.44 29.58 68.60 2.03 49.47 16 26 H -0.30 -15.04 7.11 99.48 0.71 -14.34 16 27 H -0.29 -14.54 7.11 99.48 0.71 -13.83 16 28 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 29 C 0.15 6.15 5.18 87.59 0.45 6.60 16 30 C -0.13 -4.78 5.96 31.87 0.19 -4.59 16 31 H 0.08 3.00 8.05 -2.91 -0.02 2.98 16 32 H 0.09 3.37 6.89 -2.91 -0.02 3.35 16 33 H 0.09 1.51 8.01 -2.39 -0.02 1.49 16 34 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.04 1.32 7.94 -2.39 -0.02 1.31 16 36 H 0.10 1.16 8.14 -2.38 -0.02 1.14 16 37 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.13 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.05 1.30 7.69 -2.38 -0.02 1.28 16 40 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 41 H 0.08 1.27 7.27 -2.38 -0.02 1.25 16 42 H 0.09 0.97 6.58 -2.39 -0.02 0.95 16 43 H 0.06 2.09 7.92 -2.38 -0.02 2.07 16 44 H 0.08 2.51 6.28 -2.39 -0.01 2.49 16 45 H 0.05 3.06 5.27 -2.39 -0.01 3.04 16 46 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 47 H 0.06 3.06 6.02 -2.38 -0.01 3.04 16 48 H 0.03 1.24 8.13 -2.39 -0.02 1.23 16 49 H 0.24 14.60 8.31 -92.71 -0.77 13.83 16 50 H 0.03 1.23 7.99 -2.38 -0.02 1.21 16 51 H 0.06 1.93 6.88 -2.39 -0.02 1.91 16 52 H 0.09 2.42 7.16 -2.39 -0.02 2.40 16 53 H 0.02 0.93 7.94 -2.39 -0.02 0.91 16 Total: -1.00 -79.87 392.79 4.12 -75.76 By element: Atomic # 1 Polarization: 21.09 SS G_CDS: 0.88 Total: 21.97 kcal Atomic # 6 Polarization: -6.78 SS G_CDS: 6.51 Total: -0.26 kcal Atomic # 7 Polarization: -103.32 SS G_CDS: -3.80 Total: -107.13 kcal Atomic # 8 Polarization: -38.30 SS G_CDS: -1.50 Total: -39.81 kcal Atomic # 14 Polarization: 47.44 SS G_CDS: 2.03 Total: 49.47 kcal Total: -79.87 4.12 -75.76 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948849375.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.829 kcal (2) G-P(sol) polarization free energy of solvation -79.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds