Wall clock time and date at job start Tue Mar 31 2020 19:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47402 * 2 1 4 4 C 1.53001 * 109.47175 * 119.99861 * 2 1 3 5 5 H 1.09005 * 115.55028 * 325.58201 * 4 2 1 6 6 C 1.52995 * 117.52014 * 111.28137 * 4 2 1 7 7 C 1.52995 * 117.50323 * 179.91373 * 4 2 1 8 8 H 1.09011 * 117.49817 * 359.97438 * 7 4 2 9 9 C 1.50702 * 117.50476 * 144.99171 * 7 4 2 10 10 O 1.21280 * 119.99465 * 0.02562 * 9 7 4 11 11 N 1.34775 * 120.00281 * 180.02562 * 9 7 4 12 12 C 1.46928 * 120.64511 * 359.72681 * 11 9 7 13 13 C 1.52725 * 109.02682 * 233.63330 * 12 11 9 14 14 C 1.52989 * 109.42208 * 305.66365 * 13 12 11 15 15 C 1.52993 * 109.64044 * 61.06962 * 14 13 12 16 16 C 1.46935 * 120.64154 * 180.02562 * 11 9 7 17 17 C 1.53261 * 109.36498 * 181.00433 * 14 13 12 18 18 N 1.47158 * 108.40128 * 172.12834 * 17 14 13 19 19 C 1.36941 * 120.99032 * 129.48979 * 18 17 14 20 20 H 1.07993 * 119.99734 * 206.22342 * 19 18 17 21 21 C 1.38814 * 119.99819 * 26.22788 * 19 18 17 22 22 N 1.31621 * 120.00133 * 16.89760 * 21 19 18 23 23 Si 1.86800 * 119.99848 * 196.90561 * 21 19 18 24 24 H 1.48504 * 109.46969 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.46931 * 119.99489 * 23 21 19 26 26 H 1.48497 * 109.47141 * 239.99825 * 23 21 19 27 27 C 1.47151 * 118.01888 * 309.51481 * 18 17 14 28 28 C 1.53293 * 108.38563 * 50.58619 * 27 18 17 29 29 O 1.42889 * 109.55843 * 300.80803 * 14 13 12 30 30 H 1.09000 * 109.46793 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47152 * 300.00586 * 1 2 3 32 32 H 1.08996 * 109.46824 * 60.00092 * 1 2 3 33 33 H 1.09005 * 109.47396 * 239.99524 * 2 1 3 34 34 H 1.08995 * 109.47690 * 180.02562 * 3 2 1 35 35 H 1.09004 * 109.46780 * 299.99870 * 3 2 1 36 36 H 1.09005 * 109.47234 * 59.99424 * 3 2 1 37 37 H 1.09004 * 117.50216 * 214.97110 * 6 4 2 38 38 H 1.09000 * 117.50141 * 0.02562 * 6 4 2 39 39 H 1.09007 * 109.58813 * 353.47114 * 12 11 9 40 40 H 1.09003 * 109.58788 * 113.89656 * 12 11 9 41 41 H 1.08995 * 109.56183 * 185.61220 * 13 12 11 42 42 H 1.08997 * 109.34044 * 65.58162 * 13 12 11 43 43 H 1.08998 * 109.49337 * 178.83062 * 15 14 13 44 44 H 1.09003 * 109.50986 * 58.76716 * 15 14 13 45 45 H 1.08998 * 109.58395 * 246.10699 * 16 11 9 46 46 H 1.08997 * 109.58943 * 6.38580 * 16 11 9 47 47 H 1.08996 * 109.67905 * 291.85461 * 17 14 13 48 48 H 1.08994 * 109.67880 * 52.40351 * 17 14 13 49 49 H 0.96997 * 119.99899 * 179.97438 * 22 21 19 50 50 H 1.09001 * 109.68472 * 290.86160 * 27 18 17 51 51 H 1.09000 * 109.68006 * 170.30801 * 27 18 17 52 52 H 1.08994 * 109.51228 * 187.73891 * 28 27 18 53 53 H 1.08998 * 109.55500 * 67.61223 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.4319 -0.5966 2.1453 6 6 2.7400 -2.0673 1.0522 7 6 3.5550 -0.8299 1.4334 8 1 4.1884 -0.3879 0.6642 9 6 4.0922 -0.7563 2.8394 10 8 3.3307 -0.6165 3.7729 11 7 5.4189 -0.8460 3.0595 12 6 6.3536 -1.0217 1.9396 13 6 7.2323 -2.2410 2.2110 14 6 7.9066 -2.0885 3.5758 15 6 6.8404 -2.0042 4.6697 16 6 5.9579 -0.7766 4.4247 17 6 8.8075 -3.3009 3.8358 18 7 9.5875 -3.0465 5.0574 19 6 9.6371 -3.9700 6.0674 20 1 9.8258 -3.6511 7.0817 21 6 9.4448 -5.3159 5.7872 22 7 9.5464 -5.7516 4.5494 23 14 9.0415 -6.5088 7.1670 24 1 8.9847 -5.7736 8.4561 25 1 7.7267 -7.1461 6.9018 26 1 10.0930 -7.5548 7.2402 27 6 10.3122 -1.7701 5.1616 28 6 9.3366 -0.6325 4.8391 29 8 8.6991 -0.8996 3.5876 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9564 0.8900 37 1 2.5923 -2.8284 1.8185 38 1 2.8377 -2.4393 0.0323 39 1 5.7938 -1.1746 1.0169 40 1 6.9819 -0.1359 1.8457 41 1 7.9942 -2.3216 1.4358 42 1 6.6143 -3.1389 2.2089 43 1 7.3237 -1.9165 5.6427 44 1 6.2254 -2.9040 4.6488 45 1 6.5533 0.1295 4.5368 46 1 5.1369 -0.7653 5.1416 47 1 8.1941 -4.1917 3.9708 48 1 9.4828 -3.4440 2.9923 49 1 9.4124 -6.6921 4.3537 50 1 11.1383 -1.7578 4.4507 51 1 10.6968 -1.6479 6.1742 52 1 9.8828 0.3086 4.7759 53 1 8.5834 -0.5643 5.6240 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000949504445.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:55 Heat of formation + Delta-G solvation = -55.206561 kcal Electronic energy + Delta-G solvation = -31201.407420 eV Core-core repulsion = 27266.507277 eV Total energy + Delta-G solvation = -3934.900143 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.74308 -40.58941 -38.59630 -37.38082 -36.17373 -34.28025 -33.69091 -33.19331 -32.26695 -29.84683 -28.42462 -27.97901 -26.20009 -25.01067 -24.72781 -23.85522 -23.55972 -22.34250 -20.91072 -20.40692 -19.72395 -18.80896 -18.42160 -17.25347 -17.14519 -16.60793 -16.24658 -16.03130 -15.84414 -15.81424 -15.47340 -15.32818 -15.24933 -14.82566 -14.62281 -14.45286 -13.97491 -13.91900 -13.56145 -13.43814 -13.36404 -13.22884 -13.18372 -12.98046 -12.81953 -12.71835 -12.40119 -12.30141 -12.21849 -12.14464 -12.09030 -12.02511 -11.73318 -11.69340 -11.53034 -11.20089 -11.08894 -10.87647 -10.76216 -10.69819 -10.44949 -9.65623 -8.70091 -7.91012 -5.36656 1.41145 1.44207 1.46430 1.53279 1.95032 2.45038 2.86464 2.89768 3.22417 3.40917 3.52817 3.75761 3.77866 3.85057 3.93375 3.98866 4.08156 4.13185 4.17404 4.29448 4.36319 4.40991 4.43953 4.47240 4.53127 4.57122 4.67453 4.69956 4.75596 4.80700 4.86646 4.87586 4.90878 4.95859 4.96297 5.00937 5.06260 5.08233 5.10196 5.13935 5.24818 5.27397 5.30981 5.33412 5.47338 5.51288 5.56318 5.57723 5.62580 6.29479 6.43059 6.43409 7.07413 7.14198 7.76743 8.29854 9.14039 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.017349 B = 0.002936 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.507394 B = 9533.928276 C =10249.864199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.061 4.061 3 C -0.146 4.146 4 C -0.112 4.112 5 H 0.089 0.911 6 C -0.138 4.138 7 C -0.190 4.190 8 H 0.151 0.849 9 C 0.537 3.463 10 O -0.592 6.592 11 N -0.602 5.602 12 C 0.120 3.880 13 C -0.114 4.114 14 C 0.107 3.893 15 C -0.134 4.134 16 C 0.127 3.873 17 C 0.168 3.832 18 N -0.611 5.611 19 C -0.257 4.257 20 H 0.068 0.932 21 C -0.048 4.048 22 N -0.933 5.933 23 Si 0.961 3.039 24 H -0.267 1.267 25 H -0.292 1.292 26 H -0.291 1.291 27 C 0.104 3.896 28 C 0.052 3.948 29 O -0.378 6.378 30 H 0.057 0.943 31 H 0.046 0.954 32 H 0.068 0.932 33 H 0.090 0.910 34 H 0.056 0.944 35 H 0.068 0.932 36 H 0.042 0.958 37 H 0.081 0.919 38 H 0.134 0.866 39 H 0.116 0.884 40 H 0.084 0.916 41 H 0.091 0.909 42 H 0.072 0.928 43 H 0.071 0.929 44 H 0.048 0.952 45 H 0.076 0.924 46 H 0.072 0.928 47 H 0.059 0.941 48 H -0.002 1.002 49 H 0.250 0.750 50 H 0.017 0.983 51 H 0.066 0.934 52 H 0.117 0.883 53 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.723 13.359 -12.295 22.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.079 4.079 3 C -0.204 4.204 4 C -0.131 4.131 5 H 0.107 0.893 6 C -0.176 4.176 7 C -0.211 4.211 8 H 0.169 0.831 9 C 0.327 3.673 10 O -0.474 6.474 11 N -0.333 5.333 12 C -0.001 4.001 13 C -0.153 4.153 14 C 0.066 3.934 15 C -0.172 4.172 16 C 0.004 3.996 17 C 0.042 3.958 18 N -0.335 5.335 19 C -0.387 4.387 20 H 0.086 0.914 21 C -0.244 4.244 22 N -0.579 5.579 23 Si 0.789 3.211 24 H -0.192 1.192 25 H -0.218 1.218 26 H -0.218 1.218 27 C -0.021 4.021 28 C -0.025 4.025 29 O -0.297 6.297 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.087 0.913 33 H 0.108 0.892 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.061 0.939 37 H 0.099 0.901 38 H 0.152 0.848 39 H 0.134 0.866 40 H 0.102 0.898 41 H 0.109 0.891 42 H 0.091 0.909 43 H 0.089 0.911 44 H 0.067 0.933 45 H 0.095 0.905 46 H 0.090 0.910 47 H 0.078 0.922 48 H 0.016 0.984 49 H 0.059 0.941 50 H 0.035 0.965 51 H 0.085 0.915 52 H 0.134 0.866 53 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -13.072 13.409 -11.988 22.235 hybrid contribution 0.445 -1.477 1.517 2.163 sum -12.627 11.932 -10.471 20.285 Atomic orbital electron populations 1.21802 0.94315 1.02065 1.01991 1.20755 0.96214 0.95886 0.95070 1.21830 1.01240 0.95557 1.01750 1.22461 0.91161 0.99173 1.00319 0.89264 1.23175 1.00335 0.90135 1.03928 1.22313 0.96716 1.07874 0.94173 0.83138 1.20344 0.81339 0.74659 0.90952 1.90637 1.57841 1.52400 1.46515 1.48136 1.06050 1.70980 1.08161 1.21743 0.91242 0.98181 0.88977 1.21753 0.99057 0.99102 0.95354 1.21919 0.89837 0.86137 0.95481 1.22131 0.97010 0.97799 1.00295 1.21360 0.96712 0.97826 0.83690 1.21170 0.92323 0.95305 0.87036 1.44326 1.54415 1.16501 1.18287 1.19499 1.43765 0.87161 0.88305 0.91405 1.25709 1.02018 0.98414 0.98257 1.70169 1.54012 1.14167 1.19545 0.85301 0.77050 0.79045 0.79667 1.19181 1.21838 1.21843 1.21777 0.93904 0.86751 0.99663 1.23044 0.95102 0.98097 0.86292 1.87776 1.65089 1.42711 1.34109 0.92392 0.93505 0.91259 0.89219 0.92475 0.91274 0.93902 0.90072 0.84815 0.86562 0.89793 0.89067 0.90903 0.91096 0.93275 0.90541 0.90969 0.92246 0.98421 0.94087 0.96531 0.91518 0.86551 0.93241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.18 71.98 0.66 -1.11 16 2 C -0.06 -0.79 3.07 -10.79 -0.03 -0.83 16 3 C -0.15 -1.91 9.03 71.98 0.65 -1.26 16 4 C -0.11 -2.08 4.66 -10.80 -0.05 -2.13 16 5 H 0.09 2.16 7.64 -2.38 -0.02 2.15 16 6 C -0.14 -2.40 9.88 30.59 0.30 -2.09 16 7 C -0.19 -3.73 4.16 -11.54 -0.05 -3.78 16 8 H 0.15 2.11 6.30 -2.38 -0.02 2.09 16 9 C 0.54 15.47 7.48 87.66 0.66 16.13 16 10 O -0.59 -21.93 15.67 -3.03 -0.05 -21.98 16 11 N -0.60 -16.76 2.98 -819.83 -2.44 -19.20 16 12 C 0.12 2.72 6.04 86.21 0.52 3.24 16 13 C -0.11 -3.29 5.09 30.50 0.16 -3.14 16 14 C 0.11 3.88 0.68 -10.71 -0.01 3.87 16 15 C -0.13 -4.86 4.32 30.65 0.13 -4.73 16 16 C 0.13 3.99 6.20 86.35 0.54 4.52 16 17 C 0.17 7.92 4.10 86.34 0.35 8.27 16 18 N -0.61 -30.17 2.55 -697.61 -1.78 -31.95 16 19 C -0.26 -13.96 9.65 84.03 0.81 -13.14 16 20 H 0.07 3.60 7.88 -2.91 -0.02 3.57 16 21 C -0.05 -2.69 4.95 84.86 0.42 -2.27 16 22 N -0.93 -54.56 11.14 21.65 0.24 -54.32 16 23 Si 0.96 44.92 29.59 68.60 2.03 46.95 16 24 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 25 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 26 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 27 C 0.10 4.22 6.73 86.35 0.58 4.81 16 28 C 0.05 1.70 6.60 72.08 0.48 2.18 16 29 O -0.38 -12.94 9.01 -148.98 -1.34 -14.28 16 30 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.09 0.89 7.90 -2.38 -0.02 0.88 16 34 H 0.06 0.73 7.29 -2.39 -0.02 0.71 16 35 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 36 H 0.04 0.67 8.14 -2.38 -0.02 0.65 16 37 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.13 1.53 8.05 -2.39 -0.02 1.51 16 39 H 0.12 1.84 5.68 -2.38 -0.01 1.83 16 40 H 0.08 1.83 7.83 -2.39 -0.02 1.81 16 41 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 42 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 43 H 0.07 2.82 6.15 -2.39 -0.01 2.81 16 44 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 45 H 0.08 2.26 7.83 -2.39 -0.02 2.24 16 46 H 0.07 2.47 7.00 -2.39 -0.02 2.45 16 47 H 0.06 3.20 6.13 -2.39 -0.01 3.18 16 48 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 49 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 50 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 51 H 0.07 2.56 7.96 -2.39 -0.02 2.55 16 52 H 0.12 2.97 8.14 -2.39 -0.02 2.95 16 53 H 0.05 1.61 6.29 -2.39 -0.02 1.59 16 Total: -1.00 -69.18 400.03 3.65 -65.53 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: 0.87 Total: 20.71 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: 6.12 Total: 8.53 kcal Atomic # 7 Polarization: -101.49 SS G_CDS: -3.98 Total: -105.47 kcal Atomic # 8 Polarization: -34.87 SS G_CDS: -1.39 Total: -36.26 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -69.18 3.65 -65.53 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949504445.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.323 kcal (2) G-P(sol) polarization free energy of solvation -69.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds