Wall clock time and date at job start Tue Mar 31 2020 19:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.52997 * 109.46817 * 240.00194 * 2 1 3 5 5 H 1.08997 * 109.82795 * 305.70471 * 4 2 1 6 6 O 1.43242 * 109.82982 * 66.59023 * 4 2 1 7 7 C 1.43652 * 109.97252 * 117.80234 * 6 4 2 8 8 C 1.54948 * 105.13484 * 24.42573 * 7 6 4 9 9 C 1.54384 * 109.83118 * 184.81305 * 4 2 1 10 10 H 1.08996 * 110.84602 * 337.32307 * 9 4 2 11 11 C 1.50696 * 110.84736 * 100.94099 * 9 4 2 12 12 O 1.21288 * 119.99816 * 0.02562 * 11 9 4 13 13 N 1.34774 * 120.00401 * 180.02562 * 11 9 4 14 14 C 1.46502 * 120.00514 * 179.97438 * 13 11 9 15 15 C 1.53944 * 113.58349 * 252.71903 * 14 13 11 16 16 C 1.52901 * 86.78478 * 220.66093 * 15 14 13 17 17 C 1.52910 * 121.13762 * 150.62080 * 16 15 14 18 18 C 1.53947 * 86.78229 * 100.81970 * 17 16 15 19 19 N 1.46499 * 113.57835 * 270.12769 * 18 17 16 20 20 C 1.36938 * 120.00194 * 252.72236 * 19 18 17 21 21 H 1.08007 * 119.99896 * 359.97438 * 20 19 18 22 22 C 1.38804 * 120.00198 * 180.02562 * 20 19 18 23 23 N 1.31625 * 120.00267 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 120.00054 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.47221 * 89.99949 * 24 22 20 26 26 H 1.48497 * 109.47304 * 210.00055 * 24 22 20 27 27 H 1.48499 * 109.46835 * 329.99965 * 24 22 20 28 28 C 1.52905 * 121.13618 * 259.18165 * 16 15 14 29 29 C 1.52910 * 88.04223 * 24.89817 * 16 15 14 30 30 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 32 32 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 33 33 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 34 34 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 35 35 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 36 36 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 37 37 H 1.09000 * 110.30805 * 143.34469 * 7 6 4 38 38 H 1.09000 * 110.30316 * 265.50990 * 7 6 4 39 39 H 1.08999 * 111.12286 * 81.47448 * 8 7 6 40 40 H 1.09003 * 111.12149 * 205.63852 * 8 7 6 41 41 H 0.96996 * 119.99854 * 359.97438 * 13 11 9 42 42 H 1.09004 * 112.81798 * 23.90916 * 14 13 11 43 43 H 1.08998 * 113.66144 * 335.13624 * 15 14 13 44 44 H 1.09003 * 113.66022 * 106.18478 * 15 14 13 45 45 H 1.09009 * 113.66244 * 215.29328 * 17 16 15 46 46 H 1.09003 * 113.65965 * 346.34397 * 17 16 15 47 47 H 1.09002 * 113.57420 * 139.33833 * 18 17 16 48 48 H 0.96997 * 120.00112 * 72.72311 * 19 18 17 49 49 H 0.96999 * 119.99708 * 180.02562 * 23 22 20 50 50 H 1.08995 * 113.66742 * 13.65069 * 28 16 15 51 51 H 1.09004 * 113.66787 * 144.70936 * 28 16 15 52 52 H 1.08998 * 113.66580 * 220.62526 * 29 16 15 53 53 H 1.09008 * 113.74717 * 89.58442 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 1 1.5990 -1.7163 -1.3076 6 8 1.6971 0.0314 -2.4188 7 6 2.8905 0.4479 -3.1015 8 6 3.9759 -0.5738 -2.6788 9 6 3.5789 -0.8325 -1.1983 10 1 4.0015 -0.0695 -0.5446 11 6 4.0028 -2.2107 -0.7604 12 8 3.1654 -3.0503 -0.5055 13 7 5.3123 -2.5105 -0.6520 14 6 5.7243 -3.8502 -0.2257 15 6 6.2859 -3.8951 1.2069 16 6 7.3400 -4.8645 0.6711 17 6 8.7320 -4.9449 1.2988 18 6 8.2356 -6.2068 2.0276 19 7 7.6249 -5.9292 3.3300 20 6 8.2908 -6.2540 4.4817 21 1 9.2660 -6.7152 4.4298 22 6 7.7119 -5.9914 5.7157 23 7 8.3518 -6.3041 6.8226 24 14 6.0243 -5.1957 5.8054 25 1 4.9795 -6.2509 5.8182 26 1 5.9244 -4.3852 7.0456 27 1 5.8273 -4.3184 4.6235 28 6 7.2116 -6.3723 0.8900 29 6 7.1306 -4.2456 -0.7114 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5140 -0.8899 33 1 1.8934 -0.5139 0.8900 34 1 1.6768 1.9562 0.8901 35 1 3.1301 1.4425 0.0005 36 1 1.6768 1.9563 -0.8899 37 1 2.7399 0.4154 -4.1806 38 1 3.1742 1.4527 -2.7884 39 1 3.9058 -1.4879 -3.2685 40 1 4.9730 -0.1390 -2.7484 41 1 5.9819 -1.8392 -0.8562 42 1 4.9660 -4.6082 -0.4221 43 1 6.6977 -2.9444 1.5454 44 1 5.6052 -4.3448 1.9297 45 1 9.5263 -5.1399 0.5781 46 1 8.9591 -4.1144 1.9672 47 1 8.9754 -7.0063 2.0682 48 1 6.7489 -5.5153 3.3766 49 1 7.9470 -6.1209 7.6849 50 1 6.2242 -6.6822 1.2320 51 1 7.5785 -6.9686 0.0546 52 1 7.1248 -4.9753 -1.5211 53 1 7.7794 -3.3933 -0.9137 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963933428.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:35 Heat of formation + Delta-G solvation = -59.632507 kcal Electronic energy + Delta-G solvation = -30119.030111 eV Core-core repulsion = 26183.938044 eV Total energy + Delta-G solvation = -3935.092067 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.96885 -41.29191 -39.62273 -37.29014 -35.77473 -35.25810 -34.07151 -32.98326 -31.90821 -29.63721 -28.10703 -26.86116 -26.61510 -26.00227 -25.14944 -23.70364 -23.16993 -21.45152 -21.39950 -20.61133 -19.79885 -18.92081 -18.62160 -17.62967 -17.25339 -16.83269 -16.55048 -16.32269 -15.98442 -15.80200 -15.65480 -15.35947 -15.13558 -14.82995 -14.66294 -14.31826 -14.09156 -13.84328 -13.65956 -13.60714 -13.39692 -13.37583 -13.09783 -13.00975 -12.90557 -12.82293 -12.54995 -12.42506 -12.28674 -12.27164 -12.02547 -11.84427 -11.81801 -11.66839 -11.54043 -11.35391 -11.11857 -10.98715 -10.88124 -10.59992 -10.38892 -10.03739 -9.29589 -8.06439 -5.37738 1.31338 1.33426 1.39765 1.50022 2.08919 2.42289 2.81119 3.24089 3.35453 3.43153 3.50616 3.58144 3.62918 3.67185 3.73807 3.90357 3.99500 4.03268 4.04159 4.13020 4.18425 4.22265 4.30014 4.45936 4.49147 4.71426 4.74559 4.77488 4.78744 4.81943 4.82720 4.83757 4.89242 4.93604 4.95981 4.98555 5.03690 5.04977 5.07293 5.08422 5.14142 5.17401 5.32425 5.35245 5.43767 5.45128 5.56868 5.62559 5.79591 6.06665 6.20620 6.51310 7.05455 7.19258 7.84733 8.01536 9.15345 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.013817 B = 0.002745 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.002840 B =10198.249918 C =11665.817707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.109 4.109 3 C -0.142 4.142 4 C 0.101 3.899 5 H 0.067 0.933 6 O -0.388 6.388 7 C 0.045 3.955 8 C -0.135 4.135 9 C -0.140 4.140 10 H 0.134 0.866 11 C 0.521 3.479 12 O -0.583 6.583 13 N -0.700 5.700 14 C 0.128 3.872 15 C -0.135 4.135 16 C -0.092 4.092 17 C -0.141 4.141 18 C 0.143 3.857 19 N -0.736 5.736 20 C -0.226 4.226 21 H 0.062 0.938 22 C -0.061 4.061 23 N -0.982 5.982 24 Si 0.944 3.056 25 H -0.282 1.282 26 H -0.293 1.293 27 H -0.258 1.258 28 C -0.125 4.125 29 C -0.104 4.104 30 H 0.042 0.958 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.099 0.901 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.124 0.876 41 H 0.418 0.582 42 H 0.093 0.907 43 H 0.087 0.913 44 H 0.037 0.963 45 H 0.103 0.897 46 H 0.048 0.952 47 H 0.059 0.941 48 H 0.364 0.636 49 H 0.258 0.742 50 H 0.052 0.948 51 H 0.115 0.885 52 H 0.091 0.909 53 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.179 17.857 -26.111 32.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.127 4.127 3 C -0.199 4.199 4 C 0.043 3.957 5 H 0.085 0.915 6 O -0.308 6.308 7 C -0.031 4.031 8 C -0.173 4.173 9 C -0.161 4.161 10 H 0.152 0.848 11 C 0.308 3.692 12 O -0.463 6.463 13 N -0.351 5.351 14 C 0.023 3.977 15 C -0.174 4.174 16 C -0.093 4.093 17 C -0.181 4.181 18 C 0.034 3.966 19 N -0.377 5.377 20 C -0.357 4.357 21 H 0.080 0.920 22 C -0.252 4.252 23 N -0.633 5.633 24 Si 0.772 3.228 25 H -0.209 1.209 26 H -0.219 1.219 27 H -0.183 1.183 28 C -0.163 4.163 29 C -0.142 4.142 30 H 0.061 0.939 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.117 0.883 38 H 0.098 0.902 39 H 0.093 0.907 40 H 0.143 0.857 41 H 0.256 0.744 42 H 0.111 0.889 43 H 0.106 0.894 44 H 0.056 0.944 45 H 0.122 0.878 46 H 0.067 0.933 47 H 0.077 0.923 48 H 0.197 0.803 49 H 0.067 0.933 50 H 0.071 0.929 51 H 0.133 0.867 52 H 0.110 0.890 53 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -8.813 17.223 -25.861 32.297 hybrid contribution -0.595 0.181 1.237 1.385 sum -9.407 17.404 -24.623 31.587 Atomic orbital electron populations 1.21724 0.94634 1.01248 1.02166 1.21469 0.97060 0.97765 0.96453 1.21806 1.01165 0.94434 1.02455 1.22515 0.92425 0.94733 0.86034 0.91536 1.88424 1.31039 1.72759 1.38584 1.23613 0.83412 0.97822 0.98263 1.23313 1.02135 1.00643 0.91207 1.23007 0.97330 0.94766 1.01000 0.84805 1.20720 0.82713 0.89778 0.76012 1.90712 1.52536 1.51444 1.51605 1.45854 1.06890 1.14491 1.67820 1.22401 0.96627 0.84701 0.93995 1.23227 0.97487 0.99712 0.96937 1.22026 0.95625 0.94706 0.96912 1.23429 0.96133 0.99399 0.99186 1.21441 0.95198 0.96286 0.83646 1.42524 1.19995 1.73648 1.01548 1.19113 1.00552 1.31429 0.84599 0.91990 1.25374 1.01963 1.02887 0.94990 1.69858 1.40365 1.55642 0.97408 0.85580 0.81062 0.78821 0.77328 1.20870 1.21940 1.18300 1.23187 0.99254 0.94948 0.98930 1.23091 0.93584 1.01549 0.95931 0.93909 0.91965 0.92112 0.91756 0.92258 0.91729 0.91752 0.88325 0.90152 0.90691 0.85733 0.74445 0.88872 0.89413 0.94385 0.87821 0.93350 0.92263 0.80299 0.93340 0.92935 0.86677 0.89027 0.87136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 9.10 71.98 0.66 -1.96 16 2 C -0.11 -2.00 2.74 -10.79 -0.03 -2.03 16 3 C -0.14 -1.92 8.73 71.98 0.63 -1.29 16 4 C 0.10 1.97 2.66 31.06 0.08 2.05 16 5 H 0.07 1.76 6.78 -2.39 -0.02 1.74 16 6 O -0.39 -7.06 9.73 -148.98 -1.45 -8.51 16 7 C 0.04 0.45 7.71 72.65 0.56 1.01 16 8 C -0.14 -1.19 6.61 32.10 0.21 -0.98 16 9 C -0.14 -2.03 2.74 -10.23 -0.03 -2.06 16 10 H 0.13 1.41 6.08 -2.39 -0.01 1.40 16 11 C 0.52 11.17 7.15 87.66 0.63 11.80 16 12 O -0.58 -18.52 15.02 -3.06 -0.05 -18.56 16 13 N -0.70 -11.78 5.35 -439.53 -2.35 -14.13 16 14 C 0.13 2.77 4.24 45.62 0.19 2.96 16 15 C -0.13 -3.72 7.18 30.88 0.22 -3.50 16 16 C -0.09 -2.30 1.02 -52.32 -0.05 -2.36 16 17 C -0.14 -4.09 7.64 30.88 0.24 -3.86 16 18 C 0.14 5.26 4.56 45.63 0.21 5.46 16 19 N -0.74 -34.67 5.11 -319.93 -1.63 -36.30 16 20 C -0.23 -12.99 10.45 84.03 0.88 -12.12 16 21 H 0.06 3.86 8.06 -2.91 -0.02 3.84 16 22 C -0.06 -3.64 5.50 84.86 0.47 -3.17 16 23 N -0.98 -63.71 13.97 21.65 0.30 -63.41 16 24 Si 0.94 47.22 27.74 68.60 1.90 49.12 16 25 H -0.28 -13.98 7.11 99.48 0.71 -13.27 16 26 H -0.29 -14.68 7.11 99.48 0.71 -13.98 16 27 H -0.26 -11.93 6.52 99.48 0.65 -11.28 16 28 C -0.12 -3.51 7.59 30.88 0.23 -3.28 16 29 C -0.10 -1.72 7.59 30.88 0.23 -1.49 16 30 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.06 1.12 7.89 -2.39 -0.02 1.10 16 33 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.06 0.69 6.36 -2.39 -0.02 0.67 16 36 H 0.06 0.86 7.54 -2.39 -0.02 0.85 16 37 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.07 0.83 8.03 -2.39 -0.02 0.81 16 40 H 0.12 0.27 8.14 -2.39 -0.02 0.25 16 41 H 0.42 3.94 8.72 -92.71 -0.81 3.13 16 42 H 0.09 2.47 7.47 -2.38 -0.02 2.45 16 43 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 44 H 0.04 1.29 7.47 -2.39 -0.02 1.28 16 45 H 0.10 2.39 8.14 -2.38 -0.02 2.37 16 46 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 47 H 0.06 2.26 8.10 -2.39 -0.02 2.24 16 48 H 0.36 16.93 4.62 -92.71 -0.43 16.50 16 49 H 0.26 15.95 8.31 -92.71 -0.77 15.18 16 50 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 51 H 0.12 2.52 8.14 -2.38 -0.02 2.50 16 52 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 53 H 0.11 1.32 8.12 -2.38 -0.02 1.30 16 Total: -1.00 -77.13 410.24 1.65 -75.48 By element: Atomic # 1 Polarization: 31.51 SS G_CDS: -0.40 Total: 31.11 kcal Atomic # 6 Polarization: -20.12 SS G_CDS: 5.33 Total: -14.80 kcal Atomic # 7 Polarization: -110.16 SS G_CDS: -3.68 Total: -113.84 kcal Atomic # 8 Polarization: -25.58 SS G_CDS: -1.50 Total: -27.07 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 1.90 Total: 49.12 kcal Total: -77.13 1.65 -75.48 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963933428.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.848 kcal (2) G-P(sol) polarization free energy of solvation -77.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds