Wall clock time and date at job start Tue Mar 31 2020 19:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50703 * 119.99764 * 2 1 4 4 C 1.50699 * 120.00283 * 180.02562 * 2 1 3 5 5 H 1.08998 * 110.41990 * 125.83885 * 4 2 1 6 6 O 1.44779 * 110.48854 * 3.37729 * 4 2 1 7 7 C 1.44421 * 105.29940 * 200.67913 * 6 4 2 8 8 C 1.54484 * 104.80332 * 40.54364 * 7 6 4 9 9 C 1.54486 * 110.36774 * 248.14498 * 4 2 1 10 10 H 1.08994 * 110.51163 * 261.58791 * 9 4 2 11 11 C 1.50697 * 110.51123 * 24.16571 * 9 4 2 12 12 O 1.21287 * 120.00069 * 53.88134 * 11 9 4 13 13 N 1.34778 * 120.00200 * 233.88122 * 11 9 4 14 14 C 1.46494 * 120.00296 * 179.97438 * 13 11 9 15 15 C 1.53002 * 109.47104 * 180.02562 * 14 13 11 16 16 H 1.08997 * 109.42822 * 64.94045 * 15 14 13 17 17 C 1.54868 * 109.45002 * 184.87217 * 15 14 13 18 18 C 1.47088 * 110.32248 * 191.30643 * 17 15 14 19 19 C 1.52566 * 114.32545 * 297.19872 * 18 17 15 20 20 C 1.50876 * 109.36211 * 85.01394 * 19 18 17 21 21 C 1.53598 * 109.95447 * 268.02586 * 20 19 18 22 22 N 1.44583 * 109.45147 * 305.00076 * 15 14 13 23 23 C 1.36942 * 118.64146 * 329.21683 * 22 15 14 24 24 H 1.07995 * 119.99643 * 332.65189 * 23 22 15 25 25 C 1.38803 * 119.99819 * 152.66016 * 23 22 15 26 26 N 1.31621 * 120.00049 * 333.36419 * 25 23 22 27 27 Si 1.86801 * 120.00165 * 153.36157 * 25 23 22 28 28 H 1.48503 * 109.47488 * 179.97438 * 27 25 23 29 29 H 1.48497 * 109.47294 * 300.00301 * 27 25 23 30 30 H 1.48506 * 109.46744 * 59.99815 * 27 25 23 31 31 H 1.07998 * 120.00340 * 359.97438 * 1 2 3 32 32 H 1.08002 * 119.99468 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.47393 * 245.08069 * 3 2 1 34 34 H 1.09008 * 109.46852 * 5.07638 * 3 2 1 35 35 H 1.08995 * 109.47038 * 125.07359 * 3 2 1 36 36 H 1.09006 * 110.37108 * 281.71901 * 7 6 4 37 37 H 1.08992 * 110.47263 * 159.42796 * 7 6 4 38 38 H 1.08996 * 110.51346 * 217.37690 * 8 7 6 39 39 H 1.09007 * 110.62116 * 94.72241 * 8 7 6 40 40 H 0.97005 * 119.99614 * 0.02562 * 13 11 9 41 41 H 1.09004 * 109.46933 * 60.00521 * 14 13 11 42 42 H 1.09000 * 109.47473 * 300.00324 * 14 13 11 43 43 H 1.09000 * 109.32616 * 311.56870 * 17 15 14 44 44 H 1.09005 * 109.32600 * 71.04574 * 17 15 14 45 45 H 1.08996 * 108.51566 * 58.45133 * 18 17 15 46 46 H 1.09005 * 108.51314 * 176.10188 * 18 17 15 47 47 H 1.09003 * 109.49092 * 204.97769 * 19 18 17 48 48 H 1.08999 * 109.49167 * 325.04153 * 19 18 17 49 49 H 1.09002 * 109.36354 * 28.30182 * 20 19 18 50 50 H 1.08997 * 109.36985 * 147.92008 * 20 19 18 51 51 H 1.09004 * 108.93544 * 280.02535 * 21 20 19 52 52 H 1.09004 * 108.76242 * 161.51070 * 21 20 19 53 53 H 0.96993 * 120.00016 * 355.46264 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.0635 -1.3051 -0.0006 5 1 2.7716 -1.3349 -0.8287 6 8 1.1445 -2.4208 -0.0810 7 6 1.8823 -3.5588 0.4154 8 6 2.6789 -3.0165 1.6229 9 6 2.7993 -1.5017 1.3435 10 1 3.8461 -1.2124 1.2518 11 6 2.1272 -0.7085 2.4344 12 8 0.9402 -0.8470 2.6416 13 7 2.8450 0.1550 3.1798 14 6 2.1916 0.9265 4.2399 15 6 3.2227 1.8240 4.9271 16 1 3.5911 2.5633 4.2159 17 6 2.5598 2.5471 6.1255 18 6 3.4423 3.6087 6.6332 19 6 4.7745 3.1089 7.1836 20 6 5.7599 2.9609 6.0507 21 6 5.7065 1.5307 5.4930 22 7 4.3261 1.0169 5.3976 23 6 4.0792 -0.2760 5.7756 24 1 3.1027 -0.5538 6.1438 25 6 5.0841 -1.2292 5.6857 26 7 6.0506 -1.0854 4.8038 27 14 5.0650 -2.7161 6.8162 28 1 6.2384 -3.5774 6.5214 29 1 5.1247 -2.2643 8.2295 30 1 3.8163 -3.4893 6.5961 31 1 -0.5400 0.9353 0.0004 32 1 -0.5399 -0.9354 0.0004 33 1 2.6201 1.4034 -0.9320 34 1 1.3585 2.1316 0.0909 35 1 2.7565 1.3246 0.8410 36 1 2.5620 -3.9336 -0.3500 37 1 1.1995 -4.3463 0.7340 38 1 3.6661 -3.4765 1.6669 39 1 2.1352 -3.1916 2.5514 40 1 3.7943 0.2661 3.0138 41 1 1.7583 0.2443 4.9714 42 1 1.4040 1.5436 3.8074 43 1 1.6152 2.9859 5.8044 44 1 2.3682 1.8263 6.9205 45 1 3.6436 4.3087 5.8223 46 1 2.9203 4.1421 7.4277 47 1 5.1598 3.8250 7.9095 48 1 4.6288 2.1430 7.6674 49 1 5.5111 3.6693 5.2605 50 1 6.7653 3.1688 6.4166 51 1 6.2839 0.8751 6.1448 52 1 6.1557 1.5247 4.4998 53 1 6.0258 -0.3492 4.1729 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969069915.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:39:41 Heat of formation + Delta-G solvation = -62.952734 kcal Electronic energy + Delta-G solvation = -32296.315393 eV Core-core repulsion = 28361.079350 eV Total energy + Delta-G solvation = -3935.236042 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.62833 -40.16516 -39.03634 -36.05110 -35.93398 -35.43465 -33.66818 -32.93156 -32.32443 -29.81860 -28.49689 -28.03834 -27.35108 -25.08046 -24.94268 -23.76499 -22.73484 -21.49453 -20.96056 -20.82144 -19.68789 -18.76495 -18.10664 -17.35994 -17.21060 -16.75366 -16.51263 -16.24380 -16.11029 -15.69618 -15.62026 -15.44478 -14.96542 -14.75019 -14.47994 -14.34260 -14.08503 -13.92339 -13.81182 -13.59464 -13.43414 -13.19865 -12.91234 -12.84627 -12.64572 -12.62430 -12.60169 -12.27711 -12.15847 -12.01440 -11.97010 -11.85950 -11.70341 -11.48962 -11.39053 -11.15665 -11.03592 -10.83805 -10.59151 -10.25761 -10.00403 -9.63331 -8.74520 -8.07219 -5.21500 1.33630 1.57343 1.59647 1.77758 1.79103 2.41236 2.66633 2.82825 3.27965 3.46218 3.52353 3.71697 3.84706 3.94494 4.01798 4.02441 4.15691 4.18717 4.20315 4.28313 4.32663 4.36276 4.39279 4.50487 4.54409 4.57210 4.64993 4.74919 4.77965 4.80730 4.86861 4.88955 4.96116 4.97199 5.02920 5.07302 5.09366 5.13524 5.15332 5.24099 5.34339 5.42448 5.52332 5.54615 5.63089 5.65032 5.72542 5.74894 6.04100 6.10633 6.58485 6.79197 7.24708 7.46123 7.94061 8.30325 9.17966 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.011600 B = 0.004766 C = 0.003792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2413.187904 B = 5873.108232 C = 7382.794568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.150 4.150 3 C -0.109 4.109 4 C 0.134 3.866 5 H 0.108 0.892 6 O -0.382 6.382 7 C 0.052 3.948 8 C -0.138 4.138 9 C -0.133 4.133 10 H 0.108 0.892 11 C 0.525 3.475 12 O -0.578 6.578 13 N -0.689 5.689 14 C 0.142 3.858 15 C 0.177 3.823 16 H 0.057 0.943 17 C -0.128 4.128 18 C -0.100 4.100 19 C -0.104 4.104 20 C -0.126 4.126 21 C 0.165 3.835 22 N -0.591 5.591 23 C -0.326 4.326 24 H 0.028 0.972 25 C -0.050 4.050 26 N -0.932 5.932 27 Si 1.082 2.918 28 H -0.292 1.292 29 H -0.291 1.291 30 H -0.296 1.296 31 H 0.103 0.897 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.068 0.932 35 H 0.056 0.944 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.051 0.949 40 H 0.401 0.599 41 H 0.031 0.969 42 H 0.059 0.941 43 H 0.069 0.931 44 H 0.037 0.963 45 H 0.063 0.937 46 H 0.061 0.939 47 H 0.066 0.934 48 H 0.040 0.960 49 H 0.065 0.935 50 H 0.065 0.935 51 H 0.032 0.968 52 H 0.005 0.995 53 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.926 6.035 -8.067 10.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.150 4.150 3 C -0.166 4.166 4 C 0.076 3.924 5 H 0.125 0.875 6 O -0.301 6.301 7 C -0.025 4.025 8 C -0.176 4.176 9 C -0.155 4.155 10 H 0.126 0.874 11 C 0.311 3.689 12 O -0.459 6.459 13 N -0.337 5.337 14 C 0.017 3.983 15 C 0.069 3.931 16 H 0.075 0.925 17 C -0.168 4.168 18 C -0.137 4.137 19 C -0.142 4.142 20 C -0.165 4.165 21 C 0.040 3.960 22 N -0.314 5.314 23 C -0.456 4.456 24 H 0.046 0.954 25 C -0.249 4.249 26 N -0.574 5.574 27 Si 0.912 3.088 28 H -0.218 1.218 29 H -0.218 1.218 30 H -0.223 1.223 31 H 0.121 0.879 32 H 0.106 0.894 33 H 0.105 0.895 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.108 0.892 37 H 0.117 0.883 38 H 0.117 0.883 39 H 0.070 0.930 40 H 0.236 0.764 41 H 0.049 0.951 42 H 0.077 0.923 43 H 0.088 0.912 44 H 0.055 0.945 45 H 0.082 0.918 46 H 0.080 0.920 47 H 0.084 0.916 48 H 0.058 0.942 49 H 0.083 0.917 50 H 0.084 0.916 51 H 0.050 0.950 52 H 0.023 0.977 53 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.137 4.602 -7.542 9.375 hybrid contribution -0.291 0.835 0.248 0.918 sum -3.427 5.437 -7.293 9.721 Atomic orbital electron populations 1.23578 0.95664 1.01415 0.98736 1.21597 0.95930 0.94573 1.02912 1.20800 1.00195 0.92914 1.02707 1.21774 0.90135 0.86091 0.94428 0.87504 1.89146 1.37347 1.18207 1.85401 1.23511 0.95501 0.89253 0.94207 1.22858 1.02404 0.92503 0.99814 1.22682 1.01374 0.96630 0.94773 0.87401 1.20364 0.86690 0.79283 0.82516 1.90628 1.16807 1.67227 1.71204 1.45715 1.12580 1.41704 1.33747 1.21278 0.94869 0.93338 0.88814 1.20626 0.87472 0.91651 0.93347 0.92492 1.21267 0.98799 0.98047 0.98731 1.20265 0.95533 0.97497 1.00402 1.20914 0.95446 1.00282 0.97544 1.21780 0.99442 0.96920 0.98361 1.20979 0.85233 0.93238 0.96520 1.43774 1.03372 1.09076 1.75195 1.19615 0.99204 0.86783 1.40005 0.95389 1.26135 0.96345 1.02039 1.00426 1.70898 1.37675 1.32068 1.16742 0.83242 0.75144 0.74844 0.75585 1.21768 1.21800 1.22276 0.87888 0.89378 0.89545 0.91263 0.92505 0.89157 0.88319 0.88323 0.93046 0.76395 0.95066 0.92297 0.91216 0.94458 0.91787 0.92038 0.91550 0.94160 0.91670 0.91627 0.94953 0.97708 0.92733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.76 12.80 67.78 0.87 -3.89 16 2 C -0.15 -4.28 3.67 -16.49 -0.06 -4.34 16 3 C -0.11 -2.57 9.91 71.24 0.71 -1.87 16 4 C 0.13 3.76 3.50 30.35 0.11 3.86 16 5 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 6 O -0.38 -11.77 9.83 -148.98 -1.46 -13.23 16 7 C 0.05 1.31 7.63 72.49 0.55 1.86 16 8 C -0.14 -4.19 6.68 31.61 0.21 -3.98 16 9 C -0.13 -4.19 3.32 -10.52 -0.03 -4.22 16 10 H 0.11 3.12 7.97 -2.39 -0.02 3.10 16 11 C 0.52 20.13 4.49 87.66 0.39 20.53 16 12 O -0.58 -25.88 15.30 -3.05 -0.05 -25.93 16 13 N -0.69 -26.19 4.31 -463.06 -2.00 -28.19 16 14 C 0.14 5.44 4.52 86.38 0.39 5.83 16 15 C 0.18 6.32 2.19 45.99 0.10 6.42 16 16 H 0.06 1.90 8.07 -2.39 -0.02 1.88 16 17 C -0.13 -4.09 5.06 29.39 0.15 -3.94 16 18 C -0.10 -2.75 5.15 28.61 0.15 -2.61 16 19 C -0.10 -3.20 5.50 29.76 0.16 -3.04 16 20 C -0.13 -3.99 5.71 30.10 0.17 -3.82 16 21 C 0.17 6.75 4.49 86.37 0.39 7.14 16 22 N -0.59 -24.85 1.64 -674.91 -1.11 -25.96 16 23 C -0.33 -16.17 7.53 84.03 0.63 -15.53 16 24 H 0.03 1.54 6.79 -2.91 -0.02 1.52 16 25 C -0.05 -2.60 4.54 84.86 0.39 -2.21 16 26 N -0.93 -49.67 12.61 21.65 0.27 -49.40 16 27 Si 1.08 50.03 29.99 68.60 2.06 52.09 16 28 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 29 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 30 H -0.30 -13.58 7.11 99.48 0.71 -12.87 16 31 H 0.10 2.75 7.84 -2.91 -0.02 2.73 16 32 H 0.09 2.97 6.89 -2.91 -0.02 2.95 16 33 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 34 H 0.07 1.53 7.79 -2.38 -0.02 1.51 16 35 H 0.06 1.46 6.94 -2.39 -0.02 1.44 16 36 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 37 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 38 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 39 H 0.05 1.88 7.68 -2.38 -0.02 1.86 16 40 H 0.40 15.53 7.96 -92.70 -0.74 14.79 16 41 H 0.03 1.41 6.82 -2.38 -0.02 1.40 16 42 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 43 H 0.07 1.94 8.11 -2.39 -0.02 1.92 16 44 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 45 H 0.06 1.59 7.36 -2.39 -0.02 1.57 16 46 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 47 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 48 H 0.04 1.52 7.48 -2.39 -0.02 1.51 16 49 H 0.06 1.85 7.32 -2.39 -0.02 1.83 16 50 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 51 H 0.03 1.55 6.73 -2.38 -0.02 1.53 16 52 H 0.01 0.21 7.17 -2.39 -0.02 0.20 16 53 H 0.26 13.73 6.37 -92.71 -0.59 13.14 16 Total: -1.00 -61.86 398.38 3.31 -58.56 By element: Atomic # 1 Polarization: 35.54 SS G_CDS: 0.32 Total: 35.87 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: 5.27 Total: -3.80 kcal Atomic # 7 Polarization: -100.72 SS G_CDS: -2.83 Total: -103.55 kcal Atomic # 8 Polarization: -37.65 SS G_CDS: -1.51 Total: -39.16 kcal Atomic # 14 Polarization: 50.03 SS G_CDS: 2.06 Total: 52.09 kcal Total: -61.86 3.31 -58.56 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969069915.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.398 kcal (2) G-P(sol) polarization free energy of solvation -61.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds