Wall clock time and date at job start Tue Mar 31 2020 21:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.47183 * 2 1 4 4 H 1.08995 * 109.82410 * 54.42669 * 3 2 1 5 5 C 1.54375 * 109.90510 * 175.36826 * 3 2 1 6 6 C 1.55414 * 102.31301 * 140.84148 * 5 3 2 7 7 C 1.54951 * 100.89042 * 325.98690 * 6 5 3 8 8 H 1.09008 * 110.30774 * 277.36104 * 7 6 5 9 9 C 1.50692 * 110.30950 * 155.28864 * 7 6 5 10 10 O 1.21281 * 119.99875 * 246.38544 * 9 7 6 11 11 N 1.34772 * 120.00351 * 66.39459 * 9 7 6 12 12 C 1.48105 * 127.84995 * 179.97438 * 11 9 7 13 13 C 1.54320 * 104.71627 * 140.21785 * 12 11 9 14 14 C 1.53001 * 112.07193 * 146.94299 * 13 12 11 15 15 C 1.53757 * 109.08317 * 271.64184 * 13 12 11 16 16 N 1.47200 * 106.40394 * 93.19741 * 15 13 12 17 17 C 1.36938 * 126.70259 * 211.29495 * 16 15 13 18 18 H 1.07998 * 120.00147 * 15.00347 * 17 16 15 19 19 C 1.38813 * 119.99778 * 195.00646 * 17 16 15 20 20 N 1.31624 * 120.00328 * 8.82027 * 19 17 16 21 21 Si 1.86803 * 119.99875 * 188.82018 * 19 17 16 22 22 H 1.48504 * 109.46901 * 89.89967 * 21 19 17 23 23 H 1.48504 * 109.47303 * 209.89645 * 21 19 17 24 24 H 1.48501 * 109.46970 * 329.89888 * 21 19 17 25 25 C 1.47207 * 106.59283 * 31.55873 * 16 15 13 26 26 C 1.54028 * 106.26583 * 328.37065 * 25 16 15 27 27 C 1.53003 * 112.77196 * 141.67547 * 26 25 16 28 28 C 1.48110 * 127.84028 * 359.97438 * 11 9 7 29 29 O 1.43244 * 109.82643 * 293.54392 * 3 2 1 30 30 H 1.09000 * 109.46917 * 60.00501 * 1 2 3 31 31 H 1.08997 * 109.46993 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47000 * 300.00631 * 1 2 3 33 33 H 1.08999 * 109.47000 * 239.99368 * 2 1 3 34 34 H 1.09001 * 109.46444 * 119.99720 * 2 1 3 35 35 H 1.09004 * 110.84295 * 259.10024 * 5 3 2 36 36 H 1.09002 * 110.85326 * 22.51365 * 5 3 2 37 37 H 1.08995 * 111.21060 * 208.06184 * 6 5 3 38 38 H 1.08999 * 111.08697 * 83.86067 * 6 5 3 39 39 H 1.09000 * 110.38952 * 21.41425 * 12 11 9 40 40 H 1.08992 * 110.48938 * 259.07694 * 12 11 9 41 41 H 1.09006 * 109.46716 * 182.01070 * 14 13 12 42 42 H 1.08998 * 109.47684 * 302.01550 * 14 13 12 43 43 H 1.09008 * 109.46936 * 62.01911 * 14 13 12 44 44 H 1.09011 * 110.06915 * 333.96547 * 15 13 12 45 45 H 1.08999 * 110.07285 * 212.43663 * 15 13 12 46 46 H 0.97002 * 119.99924 * 180.02562 * 20 19 17 47 47 H 1.09002 * 110.06626 * 87.68360 * 25 16 15 48 48 H 1.09002 * 110.06793 * 209.21167 * 25 16 15 49 49 H 1.09004 * 109.46812 * 301.37848 * 27 26 25 50 50 H 1.08998 * 109.47111 * 61.38017 * 27 26 25 51 51 H 1.08998 * 109.47302 * 181.38271 * 27 26 25 52 52 H 1.09001 * 110.39643 * 338.59747 * 28 11 9 53 53 H 1.09005 * 110.39185 * 100.97975 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6009 1.9898 0.8340 5 6 3.5793 1.4558 0.1172 6 6 3.9751 2.6097 -0.8457 7 6 2.8863 2.4653 -1.9387 8 1 3.1692 1.6938 -2.6549 9 6 2.6755 3.7803 -2.6438 10 8 1.6208 4.3679 -2.5285 11 7 3.6588 4.3034 -3.4026 12 6 3.6400 5.5722 -4.1664 13 6 5.0475 6.1720 -3.9648 14 6 5.5214 6.9519 -5.1929 15 6 5.0475 7.0386 -2.6948 16 7 5.4927 6.1659 -1.5961 17 6 5.1155 6.2471 -0.2822 18 1 4.2553 6.8374 -0.0028 19 6 5.8388 5.5708 0.6906 20 7 6.9815 4.9960 0.3805 21 14 5.1902 5.4764 2.4399 22 1 4.3361 4.2705 2.5867 23 1 6.3310 5.3932 3.3870 24 1 4.3880 6.6904 2.7366 25 6 6.4275 5.1929 -2.1845 26 6 5.9516 4.9572 -3.6303 27 6 7.1102 4.8098 -4.6186 28 6 5.0037 3.7398 -3.6621 29 8 1.6946 2.0800 -1.2354 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 3.8886 1.6786 1.1384 36 1 4.0020 0.5080 -0.2162 37 1 4.9710 2.4533 -1.2602 38 1 3.9062 3.5769 -0.3479 39 1 2.8802 6.2443 -3.7675 40 1 3.4575 5.3786 -5.2233 41 1 6.5305 7.3255 -5.0188 42 1 5.5220 6.2950 -6.0626 43 1 4.8491 7.7911 -5.3719 44 1 4.0419 7.4087 -2.4944 45 1 5.7377 7.8741 -2.8119 46 1 7.4867 4.5231 1.0603 47 1 7.4394 5.5981 -2.1827 48 1 6.3972 4.2587 -1.6237 49 1 7.7268 5.7082 -4.5922 50 1 7.7150 3.9458 -4.3432 51 1 6.7142 4.6703 -5.6245 52 1 5.2740 3.0276 -2.8825 53 1 5.0326 3.2614 -4.6411 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982291189.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:49 Heat of formation + Delta-G solvation = -72.500617 kcal Electronic energy + Delta-G solvation = -32930.515394 eV Core-core repulsion = 28994.865325 eV Total energy + Delta-G solvation = -3935.650070 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.97525 -40.81677 -39.18160 -36.40618 -34.82899 -34.44786 -33.24583 -32.96475 -32.50000 -30.04931 -28.18013 -27.44435 -26.84831 -26.51259 -24.99896 -23.87261 -22.88339 -21.95648 -21.47273 -20.51180 -19.24806 -18.78454 -18.48187 -17.41625 -17.04107 -16.83918 -16.64568 -16.37563 -15.62223 -15.32090 -15.18966 -15.02229 -14.83665 -14.51766 -14.41916 -14.27565 -14.08129 -13.99016 -13.71735 -13.51396 -13.36332 -13.11127 -13.00355 -12.82587 -12.74830 -12.69529 -12.53434 -12.45063 -12.40516 -12.14803 -11.92184 -11.88649 -11.82240 -11.76650 -11.66336 -11.43995 -11.13580 -11.05864 -10.99107 -10.67347 -10.41385 -9.64682 -8.75579 -7.88911 -5.19650 1.35774 1.38479 1.45341 1.55116 1.79763 2.44744 2.85881 3.26425 3.32851 3.48425 3.59948 3.68547 3.73864 3.76143 3.92203 3.95050 4.04519 4.13748 4.21160 4.24849 4.39423 4.40141 4.42922 4.46926 4.59970 4.67218 4.71995 4.77447 4.81999 4.83852 4.84995 4.88605 4.95322 4.98732 5.01039 5.05580 5.08921 5.15796 5.17148 5.26810 5.28178 5.31618 5.37421 5.40531 5.43491 5.50220 5.58872 5.68792 5.85876 5.93358 6.24859 6.58782 7.12484 7.15707 7.77106 8.50018 9.22590 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.009959 B = 0.005923 C = 0.004366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2810.879223 B = 4726.015812 C = 6412.044349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C 0.071 3.929 4 H 0.060 0.940 5 C -0.140 4.140 6 C -0.130 4.130 7 C 0.078 3.922 8 H 0.122 0.878 9 C 0.532 3.468 10 O -0.587 6.587 11 N -0.605 5.605 12 C 0.122 3.878 13 C -0.074 4.074 14 C -0.117 4.117 15 C 0.138 3.862 16 N -0.606 5.606 17 C -0.229 4.229 18 H 0.047 0.953 19 C -0.030 4.030 20 N -0.927 5.927 21 Si 0.940 3.060 22 H -0.282 1.282 23 H -0.287 1.287 24 H -0.287 1.287 25 C 0.193 3.807 26 C -0.088 4.088 27 C -0.116 4.116 28 C 0.110 3.890 29 O -0.374 6.374 30 H 0.041 0.959 31 H 0.073 0.927 32 H 0.048 0.952 33 H 0.078 0.922 34 H 0.093 0.907 35 H 0.075 0.925 36 H 0.112 0.888 37 H 0.097 0.903 38 H 0.048 0.952 39 H 0.046 0.954 40 H 0.100 0.900 41 H 0.062 0.938 42 H 0.088 0.912 43 H 0.060 0.940 44 H 0.017 0.983 45 H 0.014 0.986 46 H 0.250 0.750 47 H -0.008 1.008 48 H 0.050 0.950 49 H 0.056 0.944 50 H 0.062 0.938 51 H 0.088 0.912 52 H 0.076 0.924 53 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.233 -10.356 -11.231 15.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.159 4.159 3 C 0.013 3.987 4 H 0.078 0.922 5 C -0.178 4.178 6 C -0.168 4.168 7 C 0.017 3.983 8 H 0.139 0.861 9 C 0.322 3.678 10 O -0.468 6.468 11 N -0.337 5.337 12 C 0.000 4.000 13 C -0.076 4.076 14 C -0.174 4.174 15 C 0.012 3.988 16 N -0.330 5.330 17 C -0.358 4.358 18 H 0.064 0.936 19 C -0.225 4.225 20 N -0.575 5.575 21 Si 0.769 3.231 22 H -0.208 1.208 23 H -0.213 1.213 24 H -0.213 1.213 25 C 0.067 3.933 26 C -0.090 4.090 27 C -0.173 4.173 28 C -0.012 4.012 29 O -0.293 6.293 30 H 0.060 0.940 31 H 0.092 0.908 32 H 0.067 0.933 33 H 0.096 0.904 34 H 0.111 0.889 35 H 0.094 0.906 36 H 0.130 0.870 37 H 0.116 0.884 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.118 0.882 41 H 0.081 0.919 42 H 0.107 0.893 43 H 0.079 0.921 44 H 0.036 0.964 45 H 0.032 0.968 46 H 0.059 0.941 47 H 0.010 0.990 48 H 0.069 0.931 49 H 0.075 0.925 50 H 0.081 0.919 51 H 0.106 0.894 52 H 0.095 0.905 53 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -2.041 -10.135 -10.928 15.044 hybrid contribution -0.231 0.830 1.965 2.146 sum -2.272 -9.305 -8.963 13.118 Atomic orbital electron populations 1.21702 0.95456 1.02128 1.01289 1.21865 0.96805 0.93408 1.03812 1.23016 0.94962 0.94818 0.85864 0.92164 1.23187 0.94473 0.99528 1.00567 1.23107 0.98499 0.99603 0.95590 1.22781 0.86409 0.93456 0.95654 0.86061 1.20465 0.82428 0.87293 0.77663 1.90625 1.28508 1.63887 1.63768 1.48629 1.14748 1.23309 1.47007 1.22439 0.96611 0.84919 0.96024 1.22279 0.93938 0.95465 0.95886 1.21614 1.01235 0.99643 0.94917 1.21554 0.95857 0.92930 0.88497 1.44466 1.52030 1.33358 1.03104 1.18908 1.06956 1.26968 0.83007 0.93555 1.25113 0.96263 1.01698 0.99445 1.70034 1.13898 1.40529 1.33035 0.85685 0.77293 0.77890 0.82200 1.20845 1.21305 1.21315 1.21072 0.89971 0.93117 0.89098 1.22540 0.95880 0.93562 0.97018 1.21596 0.95631 1.02201 0.97914 1.22825 0.79836 0.96023 1.02510 1.88472 1.28628 1.78269 1.33921 0.93981 0.90807 0.93305 0.90358 0.88865 0.90595 0.86981 0.88448 0.93265 0.93516 0.88184 0.91881 0.89305 0.92079 0.96444 0.96787 0.94063 0.99016 0.93116 0.92455 0.91920 0.89374 0.90550 0.87375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.28 9.82 71.98 0.71 -2.57 16 2 C -0.12 -2.65 5.51 30.60 0.17 -2.48 16 3 C 0.07 2.13 3.52 31.06 0.11 2.23 16 4 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 5 C -0.14 -4.03 6.55 31.89 0.21 -3.82 16 6 C -0.13 -4.67 5.96 32.09 0.19 -4.47 16 7 C 0.08 2.67 3.22 30.51 0.10 2.77 16 8 H 0.12 3.25 8.14 -2.38 -0.02 3.23 16 9 C 0.53 21.80 7.29 87.66 0.64 22.44 16 10 O -0.59 -29.48 16.81 15.46 0.26 -29.22 16 11 N -0.60 -20.99 3.31 -808.44 -2.68 -23.67 16 12 C 0.12 3.89 6.05 86.52 0.52 4.42 16 13 C -0.07 -2.25 1.08 -50.77 -0.05 -2.31 16 14 C -0.12 -2.50 7.54 71.98 0.54 -1.96 16 15 C 0.14 5.79 6.30 86.50 0.54 6.34 16 16 N -0.61 -30.15 3.38 -694.93 -2.35 -32.50 16 17 C -0.23 -12.95 10.28 84.03 0.86 -12.09 16 18 H 0.05 2.77 7.84 -2.91 -0.02 2.75 16 19 C -0.03 -1.65 5.39 84.86 0.46 -1.19 16 20 N -0.93 -51.72 10.87 21.65 0.24 -51.48 16 21 Si 0.94 45.79 29.56 68.60 2.03 47.82 16 22 H -0.28 -13.38 7.11 99.48 0.71 -12.68 16 23 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 24 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 25 C 0.19 8.39 4.72 86.59 0.41 8.80 16 26 C -0.09 -2.66 1.08 -50.67 -0.05 -2.72 16 27 C -0.12 -2.51 7.59 71.98 0.55 -1.96 16 28 C 0.11 3.05 5.83 86.52 0.50 3.55 16 29 O -0.37 -13.82 9.88 -130.49 -1.29 -15.11 16 30 H 0.04 1.09 7.88 -2.39 -0.02 1.07 16 31 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 36 H 0.11 2.42 7.85 -2.39 -0.02 2.40 16 37 H 0.10 3.31 5.93 -2.39 -0.01 3.30 16 38 H 0.05 2.32 8.05 -2.39 -0.02 2.30 16 39 H 0.05 1.78 7.16 -2.39 -0.02 1.76 16 40 H 0.10 2.44 7.97 -2.39 -0.02 2.42 16 41 H 0.06 1.38 7.20 -2.38 -0.02 1.36 16 42 H 0.09 1.37 7.21 -2.39 -0.02 1.35 16 43 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 44 H 0.02 0.79 7.38 -2.38 -0.02 0.77 16 45 H 0.01 0.61 7.89 -2.39 -0.02 0.59 16 46 H 0.25 13.60 8.31 -92.71 -0.77 12.83 16 47 H -0.01 -0.40 7.93 -2.39 -0.02 -0.41 16 48 H 0.05 2.44 5.80 -2.39 -0.01 2.42 16 49 H 0.06 1.31 7.18 -2.38 -0.02 1.29 16 50 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 51 H 0.09 1.33 7.21 -2.39 -0.02 1.31 16 52 H 0.08 2.22 4.42 -2.39 -0.01 2.21 16 53 H 0.11 2.11 7.96 -2.38 -0.02 2.09 16 Total: -1.00 -74.60 397.32 3.49 -71.12 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: 0.88 Total: 18.06 kcal Atomic # 6 Polarization: 8.58 SS G_CDS: 6.40 Total: 14.98 kcal Atomic # 7 Polarization: -102.86 SS G_CDS: -4.79 Total: -107.65 kcal Atomic # 8 Polarization: -43.30 SS G_CDS: -1.03 Total: -44.33 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -74.60 3.49 -71.12 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982291189.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.383 kcal (2) G-P(sol) polarization free energy of solvation -74.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds