Wall clock time and date at job start Tue Mar 31 2020 19:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46856 * 2 1 4 4 C 1.52998 * 109.46831 * 119.99998 * 2 1 3 5 5 H 1.08994 * 109.49451 * 303.15631 * 4 2 1 6 6 O 1.42911 * 109.47438 * 183.12947 * 4 2 1 7 7 C 1.42901 * 114.09426 * 178.86090 * 6 4 2 8 8 C 1.53093 * 109.41892 * 61.15682 * 7 6 4 9 9 C 1.53176 * 109.16264 * 302.39060 * 8 7 6 10 10 C 1.53089 * 109.48127 * 63.19036 * 4 2 1 11 11 H 1.08996 * 109.52179 * 297.55291 * 10 4 2 12 12 C 1.50699 * 109.52749 * 57.68177 * 10 4 2 13 13 O 1.21279 * 119.99940 * 31.34073 * 12 10 4 14 14 N 1.34777 * 119.99933 * 211.34768 * 12 10 4 15 15 C 1.46507 * 119.99594 * 179.97438 * 14 12 10 16 16 C 1.50699 * 109.46698 * 179.97438 * 15 14 12 17 17 C 1.29457 * 117.69188 * 94.99927 * 16 15 14 18 18 C 1.50323 * 123.65126 * 180.83475 * 17 16 15 19 19 N 1.47007 * 109.16660 * 349.02122 * 18 17 16 20 20 C 1.36932 * 121.37795 * 222.67767 * 19 18 17 21 21 H 1.07998 * 120.00001 * 147.89270 * 20 19 18 22 22 C 1.38810 * 120.00017 * 327.88769 * 20 19 18 23 23 N 1.31621 * 120.00115 * 161.80323 * 22 20 19 24 24 Si 1.86801 * 120.00157 * 341.80986 * 22 20 19 25 25 H 1.48499 * 109.47360 * 90.35832 * 24 22 20 26 26 H 1.48499 * 109.47308 * 210.36101 * 24 22 20 27 27 H 1.48501 * 109.46862 * 330.36312 * 24 22 20 28 28 C 1.47349 * 117.24888 * 42.94783 * 19 18 17 29 29 C 1.49958 * 117.69633 * 274.97717 * 16 15 14 30 30 H 1.09005 * 109.46962 * 299.99470 * 1 2 3 31 31 H 1.08995 * 109.47481 * 59.99879 * 1 2 3 32 32 H 1.09005 * 109.47062 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47009 * 240.00315 * 2 1 3 34 34 H 1.09002 * 109.46917 * 297.32327 * 3 2 1 35 35 H 1.09002 * 109.46949 * 57.32416 * 3 2 1 36 36 H 1.08997 * 109.46574 * 177.32526 * 3 2 1 37 37 H 1.08996 * 109.47946 * 181.13926 * 7 6 4 38 38 H 1.09002 * 109.48202 * 301.17468 * 7 6 4 39 39 H 1.09002 * 109.52276 * 62.29404 * 8 7 6 40 40 H 1.08999 * 109.52409 * 182.48499 * 8 7 6 41 41 H 1.08998 * 109.54630 * 297.11502 * 9 8 7 42 42 H 1.09005 * 109.54642 * 176.84194 * 9 8 7 43 43 H 0.97001 * 120.00108 * 359.97438 * 14 12 10 44 44 H 1.08999 * 109.47349 * 59.99596 * 15 14 12 45 45 H 1.09002 * 109.46966 * 299.99509 * 15 14 12 46 46 H 1.08000 * 118.17747 * 0.81337 * 17 16 15 47 47 H 1.08998 * 109.52094 * 229.11676 * 18 17 16 48 48 H 1.08998 * 109.52635 * 108.93083 * 18 17 16 49 49 H 0.97002 * 120.00009 * 180.02562 * 23 22 20 50 50 H 1.08999 * 109.77223 * 57.80950 * 28 19 18 51 51 H 1.08995 * 109.77729 * 178.61819 * 28 19 18 52 52 H 1.09000 * 109.31584 * 281.31173 * 29 16 15 53 53 H 1.09000 * 109.31876 * 40.93272 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 1.6313 -0.2414 2.1385 6 8 3.4672 -0.6580 1.2867 7 6 4.0489 -1.2825 2.4329 8 6 3.6860 -2.7698 2.4412 9 6 2.1612 -2.9153 2.4329 10 6 1.5964 -2.1859 1.2099 11 1 0.5077 -2.2373 1.2247 12 6 2.1142 -2.8355 -0.0474 13 8 3.1639 -2.4686 -0.5314 14 7 1.4106 -3.8241 -0.6341 15 6 1.9138 -4.4551 -1.8568 16 6 0.9485 -5.5219 -2.3053 17 6 0.0618 -5.1972 -3.1908 18 6 -0.9756 -6.1485 -3.7187 19 7 -0.6478 -7.5125 -3.2792 20 6 -0.7514 -8.5800 -4.1305 21 1 -0.0772 -9.4178 -4.0305 22 6 -1.7229 -8.5855 -5.1219 23 7 -1.6127 -9.4038 -6.1469 24 14 -3.1868 -7.4313 -5.0015 25 1 -2.8649 -6.1509 -5.6812 26 1 -4.3649 -8.0561 -5.6550 27 1 -3.4944 -7.1694 -3.5725 28 6 -0.2091 -7.6843 -1.8831 29 6 1.0830 -6.8849 -1.6946 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.7163 1.9423 -0.9130 35 1 1.6379 1.9700 0.8650 36 1 3.1289 1.4428 0.0480 37 1 5.1327 -1.1730 2.3956 38 1 3.6665 -0.8100 3.3377 39 1 4.1027 -3.2514 1.5566 40 1 4.0918 -3.2387 3.3376 41 1 1.7481 -2.4775 3.3415 42 1 1.8959 -3.9714 2.3822 43 1 0.5711 -4.1177 -0.2468 44 1 2.8866 -4.9055 -1.6594 45 1 2.0137 -3.7029 -2.6393 46 1 0.0675 -4.1865 -3.5714 47 1 -0.9852 -6.1092 -4.8079 48 1 -1.9563 -5.8678 -3.3345 49 1 -2.2914 -9.4073 -6.8399 50 1 -0.9770 -7.3092 -1.2065 51 1 -0.0229 -8.7393 -1.6822 52 1 1.9073 -7.4143 -2.1724 53 1 1.2889 -6.7839 -0.6290 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000701370.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:25 Heat of formation + Delta-G solvation = -79.065844 kcal Electronic energy + Delta-G solvation = -30688.183124 eV Core-core repulsion = 26752.248365 eV Total energy + Delta-G solvation = -3935.934759 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.76576 -39.92108 -38.99120 -36.41843 -36.26791 -34.81849 -34.38971 -32.92104 -31.92861 -31.28600 -28.71981 -28.06166 -26.07212 -25.87935 -25.00748 -24.48474 -22.97523 -22.47180 -21.19680 -20.68759 -19.67614 -18.16253 -17.72395 -17.43960 -17.20897 -16.97946 -16.72235 -16.32164 -16.06277 -15.58140 -15.41469 -15.27713 -15.15313 -14.93742 -14.63534 -14.43689 -14.39448 -14.18412 -13.72364 -13.65921 -13.52830 -13.42621 -13.22111 -13.08805 -12.93960 -12.91825 -12.56820 -12.42239 -12.22878 -12.14677 -12.13826 -12.00505 -11.72789 -11.63593 -11.41893 -11.36609 -11.22414 -10.74308 -10.63580 -10.25169 -10.01502 -9.79200 -8.88321 -8.18913 -5.56950 1.08464 1.31526 1.40618 1.50385 1.75860 2.41251 2.42267 2.93670 3.04876 3.30657 3.51998 3.71110 3.76363 3.84435 3.90352 4.03021 4.09821 4.13906 4.16333 4.33438 4.35975 4.41273 4.42616 4.53458 4.54714 4.63162 4.64936 4.66320 4.73065 4.75831 4.79130 4.81581 4.85563 4.87062 4.91623 4.98476 5.00844 5.04726 5.06454 5.14720 5.26089 5.28925 5.31021 5.41477 5.45842 5.49415 5.61814 5.87417 5.98341 6.15095 6.47484 6.65060 6.89288 7.37821 7.57997 8.03925 9.01358 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.019570 B = 0.002631 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.389872 B =10638.941340 C =11414.047907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.096 4.096 3 C -0.136 4.136 4 C 0.113 3.887 5 H 0.086 0.914 6 O -0.383 6.383 7 C 0.059 3.941 8 C -0.159 4.159 9 C -0.108 4.108 10 C -0.139 4.139 11 H 0.123 0.877 12 C 0.517 3.483 13 O -0.559 6.559 14 N -0.717 5.717 15 C 0.169 3.831 16 C -0.126 4.126 17 C -0.142 4.142 18 C 0.147 3.853 19 N -0.623 5.623 20 C -0.250 4.250 21 H 0.047 0.953 22 C -0.032 4.032 23 N -0.958 5.958 24 Si 0.949 3.051 25 H -0.272 1.272 26 H -0.309 1.309 27 H -0.257 1.257 28 C 0.140 3.860 29 C -0.088 4.088 30 H 0.075 0.925 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.049 0.951 34 H 0.053 0.947 35 H 0.067 0.933 36 H 0.045 0.955 37 H 0.087 0.913 38 H 0.068 0.932 39 H 0.044 0.956 40 H 0.091 0.909 41 H 0.102 0.898 42 H 0.078 0.922 43 H 0.410 0.590 44 H 0.061 0.939 45 H 0.058 0.942 46 H 0.122 0.878 47 H 0.055 0.945 48 H 0.044 0.956 49 H 0.263 0.737 50 H 0.048 0.952 51 H 0.059 0.941 52 H 0.058 0.942 53 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.816 21.116 23.028 31.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.115 4.115 3 C -0.194 4.194 4 C 0.055 3.945 5 H 0.103 0.897 6 O -0.302 6.302 7 C -0.018 4.018 8 C -0.197 4.197 9 C -0.145 4.145 10 C -0.160 4.160 11 H 0.141 0.859 12 C 0.304 3.696 13 O -0.437 6.437 14 N -0.370 5.370 15 C 0.045 3.955 16 C -0.127 4.127 17 C -0.163 4.163 18 C 0.022 3.978 19 N -0.348 5.348 20 C -0.380 4.380 21 H 0.065 0.935 22 C -0.227 4.227 23 N -0.604 5.604 24 Si 0.777 3.223 25 H -0.198 1.198 26 H -0.238 1.238 27 H -0.182 1.182 28 C 0.015 3.985 29 C -0.126 4.126 30 H 0.094 0.906 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.064 0.936 37 H 0.105 0.895 38 H 0.086 0.914 39 H 0.062 0.938 40 H 0.109 0.891 41 H 0.120 0.880 42 H 0.097 0.903 43 H 0.247 0.753 44 H 0.079 0.921 45 H 0.076 0.924 46 H 0.140 0.860 47 H 0.073 0.927 48 H 0.061 0.939 49 H 0.071 0.929 50 H 0.066 0.934 51 H 0.078 0.922 52 H 0.077 0.923 53 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.640 21.397 22.399 31.486 hybrid contribution -0.939 -0.526 -0.716 1.292 sum 4.702 20.871 21.683 30.461 Atomic orbital electron populations 1.21867 0.92709 1.02504 1.03115 1.21176 0.96606 0.96887 0.96800 1.21670 1.00870 0.94870 1.01961 1.22011 0.81778 0.91956 0.98745 0.89660 1.88028 1.19668 1.77297 1.45190 1.22624 0.98725 0.91876 0.88546 1.22197 0.96948 0.97990 1.02537 1.21582 0.95105 1.01298 0.96552 1.22181 1.03505 0.97241 0.93103 0.85893 1.20894 0.84016 0.79023 0.85643 1.90735 1.24241 1.63259 1.65451 1.46120 1.26262 1.37477 1.27174 1.20125 0.95651 0.92791 0.86887 1.20640 0.97011 0.95667 0.99350 1.22603 0.96621 0.99590 0.97437 1.20247 0.95562 0.84096 0.97877 1.44532 1.79700 1.01887 1.08660 1.18751 1.11169 0.98367 1.09668 0.93514 1.26080 1.00557 0.99472 0.96632 1.69960 1.36413 1.42939 1.11070 0.85843 0.79519 0.78464 0.78489 1.19759 1.23753 1.18180 1.21234 0.94328 0.98848 0.84061 1.20711 0.98674 0.92589 1.00632 0.90565 0.92191 0.92122 0.93286 0.92766 0.91407 0.93579 0.89465 0.91380 0.93754 0.89062 0.87952 0.90312 0.75349 0.92075 0.92355 0.86027 0.92717 0.93896 0.92855 0.93418 0.92190 0.92319 0.88787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 8.91 71.98 0.64 -1.22 16 2 C -0.10 -1.74 2.45 -10.79 -0.03 -1.77 16 3 C -0.14 -2.33 9.06 71.98 0.65 -1.68 16 4 C 0.11 1.88 1.81 30.62 0.06 1.94 16 5 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 6 O -0.38 -8.48 8.11 -129.45 -1.05 -9.53 16 7 C 0.06 0.95 6.84 72.01 0.49 1.44 16 8 C -0.16 -2.46 5.76 30.68 0.18 -2.29 16 9 C -0.11 -1.27 5.52 30.72 0.17 -1.10 16 10 C -0.14 -2.07 2.24 -11.45 -0.03 -2.10 16 11 H 0.12 1.20 6.64 -2.39 -0.02 1.19 16 12 C 0.52 11.66 5.17 87.66 0.45 12.11 16 13 O -0.56 -17.63 13.36 16.51 0.22 -17.41 16 14 N -0.72 -14.81 5.55 -466.78 -2.59 -17.40 16 15 C 0.17 4.34 5.66 85.63 0.48 4.82 16 16 C -0.13 -3.63 5.22 -15.14 -0.08 -3.71 16 17 C -0.14 -4.58 9.47 27.10 0.26 -4.32 16 18 C 0.15 6.00 4.44 85.42 0.38 6.38 16 19 N -0.62 -28.68 2.69 -703.37 -1.89 -30.57 16 20 C -0.25 -14.15 10.07 84.03 0.85 -13.31 16 21 H 0.05 2.92 8.06 -2.91 -0.02 2.90 16 22 C -0.03 -1.88 5.26 84.86 0.45 -1.43 16 23 N -0.96 -60.34 13.97 21.65 0.30 -60.03 16 24 Si 0.95 45.65 24.30 68.60 1.67 47.32 16 25 H -0.27 -12.30 6.78 99.48 0.67 -11.63 16 26 H -0.31 -15.14 7.11 99.48 0.71 -14.43 16 27 H -0.26 -11.64 6.65 99.48 0.66 -10.98 16 28 C 0.14 5.05 6.58 86.25 0.57 5.61 16 29 C -0.09 -2.58 5.94 29.65 0.18 -2.41 16 30 H 0.08 0.69 8.14 -2.38 -0.02 0.68 16 31 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.06 0.72 6.57 -2.38 -0.02 0.71 16 33 H 0.05 1.24 6.43 -2.39 -0.02 1.23 16 34 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.05 0.95 7.52 -2.39 -0.02 0.94 16 37 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.04 1.01 6.79 -2.39 -0.02 0.99 16 40 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 43 H 0.41 6.58 8.46 -92.71 -0.78 5.80 16 44 H 0.06 1.68 8.11 -2.39 -0.02 1.66 16 45 H 0.06 1.62 7.78 -2.39 -0.02 1.60 16 46 H 0.12 3.39 7.73 -2.91 -0.02 3.37 16 47 H 0.05 2.50 5.97 -2.39 -0.01 2.49 16 48 H 0.04 1.71 6.23 -2.39 -0.01 1.69 16 49 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 50 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 51 H 0.06 2.22 7.96 -2.39 -0.02 2.20 16 52 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 53 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -74.01 397.34 2.34 -71.66 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: 0.02 Total: 19.00 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: 5.67 Total: -3.03 kcal Atomic # 7 Polarization: -103.83 SS G_CDS: -4.18 Total: -108.01 kcal Atomic # 8 Polarization: -26.11 SS G_CDS: -0.83 Total: -26.94 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 1.67 Total: 47.32 kcal Total: -74.01 2.34 -71.66 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000701370.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.404 kcal (2) G-P(sol) polarization free energy of solvation -74.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds