Wall clock time and date at job start Tue Mar 31 2020 19:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.46863 * 2 1 4 4 C 1.53000 * 109.47175 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.48694 * 305.02313 * 4 3 2 6 6 C 1.53091 * 109.47781 * 184.99971 * 4 3 2 7 7 C 1.53186 * 109.16008 * 182.40767 * 6 4 3 8 8 H 1.09002 * 109.54065 * 297.02105 * 7 6 4 9 9 C 1.50704 * 109.54367 * 176.84838 * 7 6 4 10 10 O 1.21280 * 120.00032 * 0.17310 * 9 7 6 11 11 N 1.34770 * 119.99846 * 180.17869 * 9 7 6 12 12 C 1.46502 * 119.99765 * 179.72346 * 11 9 7 13 13 C 1.50704 * 109.47325 * 180.27081 * 12 11 9 14 14 C 1.29459 * 117.68883 * 94.73849 * 13 12 11 15 15 C 1.50316 * 123.64879 * 180.59178 * 14 13 12 16 16 N 1.47001 * 109.20661 * 349.49581 * 15 14 13 17 17 C 1.36940 * 121.38143 * 222.72239 * 16 15 14 18 18 H 1.07994 * 120.00185 * 155.99326 * 17 16 15 19 19 C 1.38811 * 119.99525 * 335.99677 * 17 16 15 20 20 N 1.31622 * 120.00032 * 344.51158 * 19 17 16 21 21 Si 1.86798 * 119.99970 * 164.51351 * 19 17 16 22 22 H 1.48498 * 109.47150 * 89.99980 * 21 19 17 23 23 H 1.48504 * 109.47073 * 209.99788 * 21 19 17 24 24 H 1.48500 * 109.47040 * 329.99746 * 21 19 17 25 25 C 1.47341 * 117.24589 * 42.74094 * 16 15 14 26 26 C 1.49957 * 117.69472 * 275.00207 * 13 12 11 27 27 C 1.53171 * 109.11024 * 56.93173 * 7 6 4 28 28 C 1.53100 * 109.15962 * 303.15334 * 27 7 6 29 29 O 1.42902 * 109.48170 * 65.05410 * 4 3 2 30 30 H 1.09000 * 109.46957 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47462 * 300.00227 * 1 2 3 32 32 H 1.09001 * 109.47024 * 60.00567 * 1 2 3 33 33 H 1.08996 * 109.47462 * 239.99772 * 2 1 3 34 34 H 1.09001 * 109.47024 * 119.99433 * 2 1 3 35 35 H 1.08996 * 109.47267 * 59.99653 * 3 2 1 36 36 H 1.09001 * 109.46837 * 299.99547 * 3 2 1 37 37 H 1.08999 * 109.52581 * 62.50287 * 6 4 3 38 38 H 1.08998 * 109.52712 * 302.30596 * 6 4 3 39 39 H 0.97000 * 120.00717 * 359.97438 * 11 9 7 40 40 H 1.09001 * 109.47212 * 300.26890 * 12 11 9 41 41 H 1.09004 * 109.47192 * 60.27343 * 12 11 9 42 42 H 1.07993 * 118.17787 * 0.85432 * 14 13 12 43 43 H 1.09000 * 109.66889 * 229.47819 * 15 14 13 44 44 H 1.09006 * 109.33578 * 109.31370 * 15 14 13 45 45 H 0.97005 * 119.99734 * 180.02562 * 20 19 17 46 46 H 1.09002 * 109.78082 * 178.61654 * 25 16 15 47 47 H 1.09004 * 109.82539 * 57.83794 * 25 16 15 48 48 H 1.09000 * 109.31775 * 281.28453 * 26 13 12 49 49 H 1.08996 * 109.31977 * 40.90430 * 26 13 12 50 50 H 1.09000 * 109.51992 * 62.97204 * 27 7 6 51 51 H 1.09008 * 109.52023 * 183.15647 * 27 7 6 52 52 H 1.08994 * 109.40734 * 297.49036 * 28 27 7 53 53 H 1.08995 * 109.49049 * 177.50604 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9339 0.8528 0.8406 6 6 4.0803 2.8804 0.1251 7 6 5.6109 2.8778 0.0632 8 1 6.0092 2.3203 0.9110 9 6 6.1198 4.2956 0.1085 10 8 5.3369 5.2187 0.1861 11 7 7.4448 4.5378 0.0626 12 6 7.9391 5.9164 0.1005 13 6 9.4445 5.9124 0.0297 14 6 9.9924 6.0559 -1.1344 15 6 11.4784 6.0589 -1.3610 16 7 12.1652 6.1307 -0.0633 17 6 13.2501 6.9449 0.1252 18 1 13.5017 7.2880 1.1178 19 6 14.0262 7.3291 -0.9596 20 7 13.9206 6.6880 -2.1043 21 14 15.2205 8.7559 -0.7949 22 1 16.5415 8.2465 -0.3469 23 1 15.3700 9.4305 -2.1094 24 1 14.6995 9.7249 0.2025 25 6 11.6385 5.2902 1.0262 26 6 10.2020 5.7364 1.3119 27 6 6.0589 2.2140 -1.2425 28 6 5.4701 0.8026 -1.3164 29 8 4.0460 0.8746 -1.2224 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.6765 1.9564 0.8899 36 1 1.6766 1.9563 -0.8900 37 1 3.7550 3.3006 1.0768 38 1 3.6838 3.4808 -0.6937 39 1 8.0710 3.7996 0.0008 40 1 7.5370 6.4700 -0.7480 41 1 7.6203 6.3913 1.0284 42 1 9.3459 6.1847 -1.9899 43 1 11.7552 6.9209 -1.9678 44 1 11.7668 5.1422 -1.8755 45 1 14.4633 6.9563 -2.8623 46 1 12.2493 5.4189 1.9197 47 1 11.6459 4.2434 0.7222 48 1 10.2193 6.6823 1.8532 49 1 9.7074 4.9808 1.9221 50 1 5.7034 2.8004 -2.0898 51 1 7.1472 2.1580 -1.2679 52 1 5.8590 0.2044 -0.4924 53 1 5.7490 0.3414 -2.2637 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001001299380.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:36 Heat of formation + Delta-G solvation = -91.040526 kcal Electronic energy + Delta-G solvation = -29227.704938 eV Core-core repulsion = 25291.250917 eV Total energy + Delta-G solvation = -3936.454021 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.43601 -39.98328 -39.24179 -36.44506 -35.93843 -34.84568 -34.37765 -32.61408 -32.09300 -31.43222 -28.88516 -28.15327 -26.48249 -25.20273 -24.34598 -23.81028 -22.86629 -22.17286 -21.74769 -20.86701 -19.50130 -18.47721 -17.50789 -17.35653 -17.19237 -17.03310 -16.66735 -16.26487 -15.75556 -15.71133 -15.41495 -15.30922 -15.22437 -15.15413 -14.83654 -14.38365 -14.30020 -13.93957 -13.76278 -13.63996 -13.55451 -13.27575 -13.04817 -12.90824 -12.80068 -12.58857 -12.52697 -12.31663 -12.29627 -12.24457 -12.10822 -11.87099 -11.71875 -11.61446 -11.47576 -11.29559 -11.27904 -10.95851 -10.69019 -10.39161 -10.11312 -9.65553 -8.75286 -7.89345 -5.30155 1.16714 1.46221 1.48296 1.57251 1.58878 2.37919 2.50666 2.88225 3.28226 3.55504 3.60124 3.62115 3.76391 3.85702 3.92375 3.95569 4.11967 4.14772 4.28856 4.32340 4.38035 4.42333 4.50330 4.52517 4.60742 4.66105 4.69648 4.73502 4.78993 4.82390 4.82807 4.84938 4.91291 4.99656 5.06843 5.07633 5.09743 5.11932 5.20518 5.24891 5.31543 5.36081 5.40895 5.42401 5.47339 5.52028 5.60936 5.75705 6.15094 6.33259 6.34721 6.53906 7.13022 7.20780 7.83183 8.36516 9.19187 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.033023 B = 0.001836 C = 0.001800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.688981 B =15246.950975 C =15555.091348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C -0.112 4.112 4 C 0.094 3.906 5 H 0.075 0.925 6 C -0.125 4.125 7 C -0.102 4.102 8 H 0.124 0.876 9 C 0.515 3.485 10 O -0.586 6.586 11 N -0.710 5.710 12 C 0.167 3.833 13 C -0.138 4.138 14 C -0.142 4.142 15 C 0.205 3.795 16 N -0.615 5.615 17 C -0.258 4.258 18 H 0.070 0.930 19 C -0.053 4.053 20 N -0.939 5.939 21 Si 0.966 3.034 22 H -0.284 1.284 23 H -0.294 1.294 24 H -0.273 1.273 25 C 0.138 3.862 26 C -0.084 4.084 27 C -0.144 4.144 28 C 0.062 3.938 29 O -0.394 6.394 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.049 0.951 33 H 0.058 0.942 34 H 0.066 0.934 35 H 0.086 0.914 36 H 0.059 0.941 37 H 0.077 0.923 38 H 0.055 0.945 39 H 0.413 0.587 40 H 0.057 0.943 41 H 0.067 0.933 42 H 0.110 0.890 43 H 0.056 0.944 44 H 0.015 0.985 45 H 0.250 0.750 46 H 0.059 0.941 47 H 0.030 0.970 48 H 0.062 0.938 49 H 0.089 0.911 50 H 0.058 0.942 51 H 0.096 0.904 52 H 0.071 0.929 53 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.278 -15.227 5.609 27.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.149 4.149 4 C 0.036 3.964 5 H 0.092 0.908 6 C -0.164 4.164 7 C -0.123 4.123 8 H 0.142 0.858 9 C 0.303 3.697 10 O -0.466 6.466 11 N -0.362 5.362 12 C 0.043 3.957 13 C -0.139 4.139 14 C -0.162 4.162 15 C 0.080 3.920 16 N -0.339 5.339 17 C -0.388 4.388 18 H 0.088 0.912 19 C -0.248 4.248 20 N -0.585 5.585 21 Si 0.795 3.205 22 H -0.211 1.211 23 H -0.220 1.220 24 H -0.198 1.198 25 C 0.013 3.987 26 C -0.122 4.122 27 C -0.182 4.182 28 C -0.014 4.014 29 O -0.314 6.314 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.104 0.896 36 H 0.078 0.922 37 H 0.096 0.904 38 H 0.074 0.926 39 H 0.249 0.751 40 H 0.075 0.925 41 H 0.085 0.915 42 H 0.128 0.872 43 H 0.074 0.926 44 H 0.033 0.967 45 H 0.059 0.941 46 H 0.077 0.923 47 H 0.048 0.952 48 H 0.080 0.920 49 H 0.108 0.892 50 H 0.077 0.923 51 H 0.115 0.885 52 H 0.090 0.910 53 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -22.851 -14.582 5.403 27.641 hybrid contribution 1.493 0.979 -0.364 1.822 sum -21.358 -13.603 5.040 25.819 Atomic orbital electron populations 1.21779 0.95452 1.01951 1.01827 1.21441 0.96036 0.95911 1.02206 1.21656 0.92223 0.98191 1.02880 1.22208 0.95152 0.91734 0.87273 0.90750 1.21995 0.93271 0.97905 1.03183 1.21414 0.97418 0.91834 1.01670 0.85788 1.21118 0.81887 0.92023 0.74703 1.90679 1.56708 1.47710 1.51504 1.46056 1.07047 1.09038 1.74028 1.20209 0.90276 0.83536 1.01643 1.20600 0.93603 1.04300 0.95401 1.22938 0.97588 0.98096 0.97595 1.19396 0.86318 0.98751 0.87519 1.44391 1.32246 1.48444 1.08784 1.19505 1.03411 1.21641 0.94227 0.91228 1.25715 1.00102 1.02164 0.96809 1.70161 1.43714 1.41579 1.03077 0.85287 0.78975 0.79643 0.76621 1.21051 1.22022 1.19770 1.21151 0.93359 0.92959 0.91219 1.20693 0.95595 1.01525 0.94421 1.22208 1.02607 0.97834 0.95596 1.22683 0.80193 0.94671 1.03861 1.87933 1.21921 1.82308 1.39228 0.92262 0.92325 0.93148 0.92311 0.91500 0.89596 0.92234 0.90427 0.92629 0.75085 0.92456 0.91464 0.87180 0.92582 0.96725 0.94132 0.92260 0.95230 0.91970 0.89220 0.92269 0.88538 0.91043 0.87462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.91 71.98 0.71 -0.92 16 2 C -0.12 -1.44 5.83 30.59 0.18 -1.26 16 3 C -0.11 -1.53 4.92 30.60 0.15 -1.38 16 4 C 0.09 1.37 2.64 30.62 0.08 1.45 16 5 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 6 C -0.13 -2.24 4.02 30.69 0.12 -2.12 16 7 C -0.10 -1.68 2.61 -11.42 -0.03 -1.71 16 8 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 9 C 0.51 12.31 7.16 87.66 0.63 12.94 16 10 O -0.59 -19.10 15.97 -3.03 -0.05 -19.14 16 11 N -0.71 -15.78 5.46 -466.77 -2.55 -18.32 16 12 C 0.17 4.53 5.66 85.63 0.48 5.01 16 13 C -0.14 -4.32 5.23 -15.14 -0.08 -4.40 16 14 C -0.14 -5.15 9.47 27.10 0.26 -4.90 16 15 C 0.21 9.70 5.22 85.42 0.45 10.15 16 16 N -0.61 -30.10 3.01 -703.40 -2.12 -32.21 16 17 C -0.26 -13.99 9.71 84.03 0.82 -13.18 16 18 H 0.07 3.67 7.88 -2.91 -0.02 3.64 16 19 C -0.05 -2.93 5.01 84.86 0.43 -2.51 16 20 N -0.94 -54.73 11.08 21.65 0.24 -54.49 16 21 Si 0.97 44.63 29.58 68.60 2.03 46.66 16 22 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 23 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 24 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 25 C 0.14 5.32 6.58 86.25 0.57 5.89 16 26 C -0.08 -2.59 5.94 29.65 0.18 -2.41 16 27 C -0.14 -2.08 5.30 30.68 0.16 -1.92 16 28 C 0.06 0.78 6.84 72.02 0.49 1.27 16 29 O -0.39 -6.75 9.95 -148.98 -1.48 -8.23 16 30 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.06 0.85 7.82 -2.39 -0.02 0.83 16 34 H 0.07 0.70 8.14 -2.39 -0.02 0.69 16 35 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.05 1.27 8.03 -2.39 -0.02 1.25 16 39 H 0.41 7.41 7.96 -92.71 -0.74 6.67 16 40 H 0.06 1.69 7.79 -2.39 -0.02 1.67 16 41 H 0.07 1.86 8.11 -2.38 -0.02 1.84 16 42 H 0.11 3.62 7.74 -2.91 -0.02 3.59 16 43 H 0.06 3.04 6.41 -2.39 -0.02 3.02 16 44 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 45 H 0.25 14.14 8.31 -92.70 -0.77 13.37 16 46 H 0.06 2.23 7.96 -2.39 -0.02 2.21 16 47 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 48 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 49 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 50 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 51 H 0.10 1.10 7.68 -2.38 -0.02 1.09 16 52 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 53 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -68.23 414.37 1.79 -66.43 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: 0.13 Total: 19.31 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: 5.59 Total: 0.01 kcal Atomic # 7 Polarization: -100.61 SS G_CDS: -4.42 Total: -105.03 kcal Atomic # 8 Polarization: -25.84 SS G_CDS: -1.53 Total: -27.37 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -68.23 1.79 -66.43 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001299380.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.607 kcal (2) G-P(sol) polarization free energy of solvation -68.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds