Wall clock time and date at job start Tue Mar 31 2020 19:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.46986 * 2 1 4 4 C 1.52997 * 109.47354 * 120.00348 * 2 1 3 5 5 H 1.08998 * 109.48238 * 60.01973 * 4 2 1 6 6 C 1.53091 * 109.47995 * 180.02562 * 4 2 1 7 7 C 1.53181 * 109.16158 * 177.59072 * 6 4 2 8 8 H 1.09006 * 109.61411 * 183.11210 * 7 6 4 9 9 C 1.50696 * 109.54136 * 62.88778 * 7 6 4 10 10 O 1.21270 * 120.00431 * 0.44410 * 9 7 6 11 11 N 1.34783 * 119.99704 * 180.44246 * 9 7 6 12 12 C 1.46495 * 120.00008 * 179.97438 * 11 9 7 13 13 C 1.50701 * 109.47392 * 179.97438 * 12 11 9 14 14 C 1.29452 * 117.69438 * 95.00010 * 13 12 11 15 15 C 1.50323 * 123.65213 * 180.58142 * 14 13 12 16 16 N 1.47008 * 109.16328 * 349.27916 * 15 14 13 17 17 C 1.36936 * 121.37243 * 222.92794 * 16 15 14 18 18 H 1.07999 * 119.99727 * 155.99077 * 17 16 15 19 19 C 1.38809 * 120.00130 * 335.98648 * 17 16 15 20 20 N 1.31621 * 120.00090 * 344.52120 * 19 17 16 21 21 Si 1.86802 * 119.99817 * 164.51964 * 19 17 16 22 22 H 1.48498 * 109.47383 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47150 * 120.00534 * 21 19 17 24 24 H 1.48507 * 109.47032 * 239.99909 * 21 19 17 25 25 C 1.47336 * 117.24995 * 42.94974 * 16 15 14 26 26 C 1.49969 * 117.68931 * 275.22570 * 13 12 11 27 27 C 1.53183 * 109.03725 * 303.01847 * 7 6 4 28 28 C 1.53095 * 109.15794 * 56.98236 * 27 7 6 29 29 O 1.42902 * 109.47882 * 299.99541 * 4 2 1 30 30 H 1.08998 * 109.47354 * 59.99381 * 1 2 3 31 31 H 1.08995 * 109.47075 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46391 * 299.99698 * 1 2 3 33 33 H 1.09002 * 109.46391 * 240.00302 * 2 1 3 34 34 H 1.09006 * 109.46849 * 180.02562 * 3 2 1 35 35 H 1.09006 * 109.47697 * 300.00126 * 3 2 1 36 36 H 1.08995 * 109.47686 * 60.00740 * 3 2 1 37 37 H 1.09003 * 109.52119 * 57.69041 * 6 4 2 38 38 H 1.08991 * 109.52457 * 297.49685 * 6 4 2 39 39 H 0.97003 * 120.00124 * 0.02562 * 11 9 7 40 40 H 1.09000 * 109.47181 * 60.00176 * 12 11 9 41 41 H 1.09000 * 109.47459 * 300.00481 * 12 11 9 42 42 H 1.08000 * 118.17241 * 0.85712 * 14 13 12 43 43 H 1.09002 * 109.52345 * 109.18830 * 15 14 13 44 44 H 1.08996 * 109.51812 * 229.31297 * 15 14 13 45 45 H 0.97006 * 119.99833 * 179.97438 * 20 19 17 46 46 H 1.09006 * 109.78036 * 57.80919 * 25 16 15 47 47 H 1.09000 * 109.78159 * 178.55985 * 25 16 15 48 48 H 1.08996 * 109.43675 * 40.81561 * 26 13 12 49 49 H 1.09002 * 109.12915 * 281.42473 * 26 13 12 50 50 H 1.09000 * 109.52087 * 176.88526 * 27 7 6 51 51 H 1.09001 * 109.52404 * 297.07888 * 27 7 6 52 52 H 1.08996 * 109.48330 * 62.37670 * 28 27 7 53 53 H 1.09003 * 109.47472 * 182.41020 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6772 -1.7491 1.2491 6 6 3.5710 -0.7208 1.2496 7 6 4.0736 -1.3911 2.5320 8 1 5.1622 -1.3456 2.5663 9 6 3.6281 -2.8305 2.5564 10 8 2.9799 -3.2804 1.6355 11 7 3.9502 -3.6180 3.6018 12 6 3.5167 -5.0171 3.6258 13 6 4.0034 -5.6722 4.8927 14 6 3.1911 -5.7119 5.8998 15 6 3.5413 -6.3204 7.2290 16 7 4.8045 -7.0616 7.1026 17 6 4.9674 -8.2953 7.6741 18 1 5.7013 -8.9814 7.2776 19 6 4.1895 -8.6641 8.7629 20 7 3.5236 -7.7497 9.4358 21 14 4.0876 -10.4582 9.2732 22 1 4.9231 -11.2804 8.3614 23 1 4.5827 -10.6057 10.6654 24 1 2.6764 -10.9146 9.1987 25 6 5.8882 -6.4221 6.3361 26 6 5.3964 -6.2275 4.8994 27 6 3.4917 -0.6540 3.7422 28 6 1.9638 -0.6571 3.6453 29 8 1.5640 -0.0478 2.4161 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3632 0.5138 0.8901 33 1 1.8933 -0.5138 -0.8901 34 1 3.1301 1.4424 -0.0005 35 1 1.6767 1.9564 -0.8900 36 1 1.6768 1.9563 0.8900 37 1 3.9349 0.3058 1.2085 38 1 3.9357 -1.2725 0.3833 39 1 4.4685 -3.2581 4.3386 40 1 3.9311 -5.5407 2.7642 41 1 2.4283 -5.0610 3.5885 42 1 2.2054 -5.2880 5.7769 43 1 3.6548 -5.5312 7.9724 44 1 2.7480 -7.0008 7.5384 45 1 2.9796 -8.0075 10.1965 46 1 6.1309 -5.4551 6.7770 47 1 6.7708 -7.0616 6.3413 48 1 6.0636 -5.5398 4.3799 49 1 5.4006 -7.1879 4.3838 50 1 3.7996 -1.1580 4.6583 51 1 3.8540 0.3740 3.7514 52 1 1.5996 -1.6839 3.6770 53 1 1.5455 -0.0969 4.4816 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001001337297.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:55 Heat of formation + Delta-G solvation = -81.595927 kcal Electronic energy + Delta-G solvation = -30206.218145 eV Core-core repulsion = 26270.173673 eV Total energy + Delta-G solvation = -3936.044472 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -41.78042 -39.88130 -39.11465 -36.45059 -36.18084 -34.84333 -34.36215 -32.57745 -31.44614 -30.95254 -28.77517 -28.02075 -26.77487 -25.65104 -24.55116 -24.37019 -23.23487 -22.59090 -21.04737 -20.60298 -19.48740 -18.06088 -17.55110 -17.25256 -17.19101 -16.99686 -16.72939 -16.28893 -15.82059 -15.77421 -15.40429 -15.27418 -15.06477 -14.99302 -14.73139 -14.43019 -14.20453 -14.00259 -13.77196 -13.49576 -13.31445 -13.24632 -13.11281 -12.91959 -12.83431 -12.77257 -12.62411 -12.55352 -12.32186 -12.21020 -12.09836 -11.81188 -11.72267 -11.63708 -11.47780 -11.30869 -11.24553 -10.78754 -10.70369 -10.22110 -10.06429 -9.65002 -8.76346 -7.89959 -5.30978 1.17164 1.45095 1.47449 1.57176 1.61552 2.41616 2.49802 2.88036 3.27403 3.54802 3.60949 3.71119 3.80827 3.86430 3.93680 3.95061 4.02795 4.17485 4.23740 4.32041 4.42065 4.45809 4.51696 4.60485 4.65002 4.71270 4.72548 4.77842 4.82287 4.83463 4.90201 4.90514 4.91865 4.97316 5.05323 5.08135 5.09422 5.12250 5.20041 5.21085 5.26769 5.36481 5.41967 5.47114 5.48286 5.56047 5.60636 5.75539 6.15067 6.32726 6.34494 6.55694 7.12349 7.23564 7.82385 8.35678 9.18647 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.027201 B = 0.002150 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.118886 B =13022.201824 C =13203.264251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.089 4.089 3 C -0.139 4.139 4 C 0.085 3.915 5 H 0.050 0.950 6 C -0.126 4.126 7 C -0.108 4.108 8 H 0.128 0.872 9 C 0.511 3.489 10 O -0.577 6.577 11 N -0.711 5.711 12 C 0.168 3.832 13 C -0.137 4.137 14 C -0.142 4.142 15 C 0.206 3.794 16 N -0.616 5.616 17 C -0.255 4.255 18 H 0.070 0.930 19 C -0.055 4.055 20 N -0.939 5.939 21 Si 0.966 3.034 22 H -0.267 1.267 23 H -0.292 1.292 24 H -0.292 1.292 25 C 0.139 3.861 26 C -0.084 4.084 27 C -0.140 4.140 28 C 0.053 3.947 29 O -0.385 6.385 30 H 0.066 0.934 31 H 0.040 0.960 32 H 0.053 0.947 33 H 0.082 0.918 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.054 0.946 37 H 0.098 0.902 38 H 0.072 0.928 39 H 0.412 0.588 40 H 0.066 0.934 41 H 0.056 0.944 42 H 0.110 0.890 43 H 0.015 0.985 44 H 0.055 0.945 45 H 0.249 0.751 46 H 0.029 0.971 47 H 0.059 0.941 48 H 0.090 0.910 49 H 0.061 0.939 50 H 0.091 0.909 51 H 0.103 0.897 52 H 0.025 0.975 53 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.809 19.382 -17.017 25.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.107 4.107 3 C -0.196 4.196 4 C 0.028 3.972 5 H 0.068 0.932 6 C -0.164 4.164 7 C -0.129 4.129 8 H 0.146 0.854 9 C 0.299 3.701 10 O -0.457 6.457 11 N -0.363 5.363 12 C 0.045 3.955 13 C -0.138 4.138 14 C -0.163 4.163 15 C 0.080 3.920 16 N -0.340 5.340 17 C -0.385 4.385 18 H 0.088 0.912 19 C -0.250 4.250 20 N -0.586 5.586 21 Si 0.795 3.205 22 H -0.192 1.192 23 H -0.219 1.219 24 H -0.219 1.219 25 C 0.014 3.986 26 C -0.122 4.122 27 C -0.178 4.178 28 C -0.023 4.023 29 O -0.304 6.304 30 H 0.085 0.915 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.100 0.900 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.117 0.883 38 H 0.091 0.909 39 H 0.248 0.752 40 H 0.085 0.915 41 H 0.074 0.926 42 H 0.128 0.872 43 H 0.033 0.967 44 H 0.074 0.926 45 H 0.059 0.941 46 H 0.048 0.952 47 H 0.077 0.923 48 H 0.108 0.892 49 H 0.080 0.920 50 H 0.109 0.891 51 H 0.121 0.879 52 H 0.043 0.957 53 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 0.165 19.166 -17.553 25.990 hybrid contribution -0.112 -1.490 1.201 1.918 sum 0.053 17.675 -16.352 24.079 Atomic orbital electron populations 1.21737 0.95041 1.01060 1.02052 1.21174 0.96371 0.97553 0.95622 1.21776 1.01261 0.94614 1.01939 1.22309 0.93464 0.95614 0.85815 0.93173 1.22047 0.95947 1.01862 0.96567 1.21513 1.03788 0.89505 0.98097 0.85385 1.21201 0.78730 0.88983 0.81180 1.90644 1.41034 1.76472 1.37596 1.46081 1.56286 1.10920 1.23005 1.20176 0.98374 0.81339 0.95622 1.20595 0.97191 1.01756 0.94244 1.22924 0.98930 0.98401 0.96005 1.19390 0.88580 0.93344 0.90642 1.44417 1.10041 1.18255 1.61253 1.19536 1.19785 0.91249 1.07917 0.91207 1.25730 1.01537 1.01393 0.96319 1.70167 1.35069 1.32762 1.20561 0.85214 0.77179 0.80636 0.77484 1.19158 1.21898 1.21906 1.21143 0.90764 0.95976 0.90763 1.20689 0.93271 1.00312 0.97948 1.22194 0.95675 1.02848 0.97063 1.22649 0.94963 0.97349 0.87366 1.87865 1.75186 1.53691 1.13708 0.91526 0.94079 0.92828 0.90008 0.91767 0.92068 0.92726 0.88329 0.90905 0.75193 0.91530 0.92581 0.87233 0.96710 0.92646 0.94135 0.95248 0.92263 0.89209 0.92041 0.89073 0.87903 0.95670 0.87302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 9.05 71.98 0.65 -1.91 16 2 C -0.09 -1.57 2.81 -10.79 -0.03 -1.60 16 3 C -0.14 -1.95 8.70 71.98 0.63 -1.33 16 4 C 0.09 1.79 2.09 30.62 0.06 1.85 16 5 H 0.05 1.40 5.82 -2.39 -0.01 1.38 16 6 C -0.13 -2.12 4.27 30.69 0.13 -1.99 16 7 C -0.11 -1.69 3.04 -11.42 -0.03 -1.73 16 8 H 0.13 1.37 8.14 -2.38 -0.02 1.35 16 9 C 0.51 11.70 5.82 87.65 0.51 12.21 16 10 O -0.58 -17.70 13.85 -3.00 -0.04 -17.74 16 11 N -0.71 -15.44 5.43 -466.80 -2.53 -17.98 16 12 C 0.17 4.51 5.66 85.63 0.48 4.99 16 13 C -0.14 -4.26 5.23 -15.14 -0.08 -4.34 16 14 C -0.14 -5.16 9.47 27.11 0.26 -4.90 16 15 C 0.21 9.71 5.22 85.42 0.45 10.16 16 16 N -0.62 -30.18 3.01 -703.39 -2.12 -32.30 16 17 C -0.25 -13.84 9.71 84.03 0.82 -13.02 16 18 H 0.07 3.69 7.88 -2.91 -0.02 3.67 16 19 C -0.05 -3.05 5.01 84.86 0.43 -2.62 16 20 N -0.94 -54.85 11.08 21.65 0.24 -54.61 16 21 Si 0.97 44.75 29.58 68.60 2.03 46.78 16 22 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 23 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 24 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 25 C 0.14 5.34 6.58 86.25 0.57 5.90 16 26 C -0.08 -2.58 5.94 29.65 0.18 -2.40 16 27 C -0.14 -1.89 5.57 30.69 0.17 -1.72 16 28 C 0.05 1.00 6.61 72.01 0.48 1.47 16 29 O -0.39 -8.26 9.06 -148.98 -1.35 -9.61 16 30 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.04 0.81 8.14 -2.39 -0.02 0.80 16 32 H 0.05 1.05 7.68 -2.39 -0.02 1.04 16 33 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.06 0.77 6.38 -2.38 -0.02 0.76 16 35 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 36 H 0.05 0.87 7.68 -2.39 -0.02 0.85 16 37 H 0.10 1.28 6.31 -2.39 -0.02 1.27 16 38 H 0.07 1.32 8.02 -2.39 -0.02 1.30 16 39 H 0.41 7.33 7.85 -92.71 -0.73 6.60 16 40 H 0.07 1.83 8.11 -2.39 -0.02 1.81 16 41 H 0.06 1.63 7.78 -2.39 -0.02 1.61 16 42 H 0.11 3.59 7.73 -2.91 -0.02 3.57 16 43 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.06 3.00 6.41 -2.39 -0.02 2.99 16 45 H 0.25 14.13 8.31 -92.70 -0.77 13.36 16 46 H 0.03 1.09 8.14 -2.38 -0.02 1.07 16 47 H 0.06 2.23 7.96 -2.39 -0.02 2.21 16 48 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 49 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 50 H 0.09 1.05 7.49 -2.39 -0.02 1.03 16 51 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 52 H 0.02 0.58 7.38 -2.39 -0.02 0.56 16 53 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -67.32 402.47 2.04 -65.28 By element: Atomic # 1 Polarization: 20.97 SS G_CDS: 0.16 Total: 21.12 kcal Atomic # 6 Polarization: -6.62 SS G_CDS: 5.66 Total: -0.96 kcal Atomic # 7 Polarization: -100.47 SS G_CDS: -4.41 Total: -104.88 kcal Atomic # 8 Polarization: -25.96 SS G_CDS: -1.39 Total: -27.35 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -67.32 2.04 -65.28 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001337297.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.315 kcal (2) G-P(sol) polarization free energy of solvation -67.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds