Wall clock time and date at job start Tue Mar 31 2020 19:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50699 * 120.00321 * 2 1 4 4 C 1.50699 * 119.99583 * 179.97438 * 2 1 3 5 5 H 1.08997 * 109.47968 * 129.44978 * 4 2 1 6 6 O 1.42908 * 109.48278 * 9.41511 * 4 2 1 7 7 C 1.42907 * 114.09608 * 178.86175 * 6 4 2 8 8 C 1.53093 * 109.41753 * 61.15484 * 7 6 4 9 9 C 1.53177 * 109.16457 * 302.39040 * 8 7 6 10 10 C 1.53093 * 109.48270 * 249.46966 * 4 2 1 11 11 H 1.08999 * 109.52248 * 297.56508 * 10 4 2 12 12 C 1.50702 * 109.52126 * 57.68799 * 10 4 2 13 13 O 1.21289 * 120.00014 * 21.93280 * 12 10 4 14 14 N 1.34778 * 120.00385 * 201.94097 * 12 10 4 15 15 C 1.46506 * 119.99572 * 359.97438 * 14 12 10 16 16 C 1.46498 * 120.00362 * 179.97438 * 14 12 10 17 17 C 1.53041 * 109.45954 * 119.99496 * 16 14 12 18 18 C 1.53189 * 109.31261 * 181.38672 * 17 16 14 19 19 N 1.46925 * 108.77759 * 305.36488 * 18 17 16 20 20 C 1.36929 * 120.63275 * 233.59067 * 19 18 17 21 21 H 1.07999 * 120.00486 * 27.46916 * 20 19 18 22 22 C 1.38820 * 119.99912 * 207.47392 * 20 19 18 23 23 N 1.31619 * 120.00071 * 202.46728 * 22 20 19 24 24 Si 1.86798 * 120.00058 * 22.47446 * 22 20 19 25 25 H 1.48504 * 109.47074 * 270.00112 * 24 22 20 26 26 H 1.48507 * 109.46905 * 29.99690 * 24 22 20 27 27 H 1.48501 * 109.47414 * 149.99809 * 24 22 20 28 28 C 1.46936 * 118.73746 * 53.85787 * 19 18 17 29 29 C 1.53032 * 109.46036 * 240.06492 * 16 14 12 30 30 H 1.07999 * 120.00430 * 179.97438 * 1 2 3 31 31 H 1.07998 * 119.99545 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.46968 * 274.47147 * 3 2 1 33 33 H 1.08999 * 109.47112 * 34.47079 * 3 2 1 34 34 H 1.08992 * 109.47114 * 154.47217 * 3 2 1 35 35 H 1.08997 * 109.47697 * 181.14041 * 7 6 4 36 36 H 1.08999 * 109.47483 * 301.15831 * 7 6 4 37 37 H 1.09000 * 109.52087 * 62.29736 * 8 7 6 38 38 H 1.08998 * 109.51998 * 182.41756 * 8 7 6 39 39 H 1.08997 * 109.54281 * 297.11951 * 9 8 7 40 40 H 1.08996 * 109.54431 * 176.84550 * 9 8 7 41 41 H 1.08999 * 109.47431 * 270.00305 * 15 14 12 42 42 H 1.08998 * 109.47177 * 30.00842 * 15 14 12 43 43 H 1.09000 * 109.46522 * 150.00345 * 15 14 12 44 44 H 1.08999 * 109.44587 * 0.03163 * 16 14 12 45 45 H 1.09003 * 109.50167 * 61.43388 * 17 16 14 46 46 H 1.09005 * 109.49970 * 301.33538 * 17 16 14 47 47 H 1.08996 * 109.58988 * 185.57953 * 18 17 16 48 48 H 1.09003 * 109.58985 * 65.15243 * 18 17 16 49 49 H 0.96996 * 120.00135 * 354.92389 * 23 22 20 50 50 H 1.08997 * 109.58140 * 65.92767 * 28 19 18 51 51 H 1.08992 * 109.58640 * 186.35756 * 28 19 18 52 52 H 1.09012 * 109.49930 * 298.56429 * 29 16 14 53 53 H 1.09002 * 109.50247 * 58.62665 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.0634 -1.3051 0.0006 5 1 2.8106 -1.2939 -0.7929 6 8 1.1506 -2.3825 -0.2193 7 6 1.7680 -3.6706 -0.2631 8 6 2.4498 -3.9541 1.0780 9 6 3.4705 -2.8491 1.3667 10 6 2.7571 -1.4937 1.3523 11 1 3.4848 -0.6963 1.5026 12 6 1.7307 -1.4532 2.4550 13 8 0.5666 -1.6885 2.2089 14 7 2.1062 -1.1552 3.7146 15 6 3.5124 -0.8712 4.0119 16 6 1.1083 -1.1152 4.7865 17 6 1.4735 -2.1414 5.8616 18 6 0.4096 -2.1211 6.9635 19 7 0.2725 -0.7463 7.4634 20 6 0.3862 -0.4756 8.8008 21 1 0.9864 -1.1142 9.4320 22 6 -0.2700 0.6197 9.3455 23 7 0.1560 1.1483 10.4731 24 14 -1.7578 1.3434 8.4782 25 1 -1.3139 2.3953 7.5284 26 1 -2.4667 0.2716 7.7338 27 1 -2.6754 1.9387 9.4826 28 6 0.0052 0.3318 6.5014 29 6 1.0792 0.2847 5.4040 30 1 -0.5401 -0.9353 -0.0004 31 1 -0.5399 0.9353 -0.0004 32 1 2.1759 1.6597 -1.0246 33 1 1.5116 2.0433 0.5816 34 1 3.0483 1.1560 0.4428 35 1 1.0102 -4.4305 -0.4536 36 1 2.5112 -3.6904 -1.0603 37 1 1.7012 -3.9744 1.8700 38 1 2.9576 -4.9175 1.0320 39 1 4.2466 -2.8607 0.6015 40 1 3.9196 -3.0144 2.3460 41 1 4.0229 -1.7981 4.2733 42 1 3.9870 -0.4296 3.1357 43 1 3.5734 -0.1746 4.8480 44 1 0.1263 -1.3521 4.3771 45 1 2.4446 -1.8909 6.2888 46 1 1.5170 -3.1353 5.4161 47 1 0.7150 -2.7774 7.7784 48 1 -0.5438 -2.4589 6.5573 49 1 0.8815 0.7290 10.9616 50 1 -0.9805 0.1898 6.0583 51 1 0.0437 1.2943 7.0113 52 1 2.0540 0.5124 5.8355 53 1 0.8426 1.0177 4.6327 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001006103528.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:29 Heat of formation + Delta-G solvation = -56.764208 kcal Electronic energy + Delta-G solvation = -31953.849040 eV Core-core repulsion = 28018.881352 eV Total energy + Delta-G solvation = -3934.967688 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.88363 -40.10775 -38.68419 -36.57854 -36.10479 -34.98102 -34.19363 -32.19530 -31.99150 -31.16402 -28.09564 -27.89302 -26.78924 -26.05791 -25.07418 -24.43974 -23.43558 -22.21985 -20.83257 -19.99458 -19.39499 -19.26550 -18.10733 -17.53292 -17.21635 -16.66092 -16.55775 -16.12530 -16.10549 -15.80756 -15.42377 -15.32032 -15.13899 -14.75624 -14.47770 -14.40766 -14.14122 -14.11738 -13.91118 -13.83491 -13.73658 -13.44117 -13.26441 -13.15334 -13.04149 -12.62578 -12.55391 -12.44480 -12.27645 -12.10922 -12.03335 -11.82289 -11.71277 -11.53164 -11.41585 -11.33766 -11.23115 -10.65582 -10.51973 -10.37366 -9.78377 -9.47562 -9.16715 -8.51454 -5.54167 1.38324 1.38437 1.52622 1.70570 1.81981 2.04104 2.48429 2.85981 3.05332 3.33665 3.52096 3.67172 3.76310 3.81450 3.94873 3.99849 4.02560 4.15812 4.18232 4.21708 4.26171 4.31154 4.39011 4.47517 4.52327 4.55468 4.58445 4.65300 4.67306 4.72290 4.75558 4.83848 4.84271 4.87854 4.88458 4.91210 4.97594 4.99120 5.03397 5.07234 5.11286 5.16168 5.25803 5.28194 5.37737 5.62999 5.75459 5.77550 5.96989 6.24053 6.50286 6.55806 6.88345 7.37922 7.53193 8.05912 8.84665 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.017829 B = 0.003369 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.102742 B = 8310.128756 C = 8903.799221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.149 4.149 3 C -0.109 4.109 4 C 0.144 3.856 5 H 0.094 0.906 6 O -0.384 6.384 7 C 0.058 3.942 8 C -0.157 4.157 9 C -0.107 4.107 10 C -0.130 4.130 11 H 0.125 0.875 12 C 0.516 3.484 13 O -0.555 6.555 14 N -0.612 5.612 15 C 0.070 3.930 16 C 0.158 3.842 17 C -0.120 4.120 18 C 0.144 3.856 19 N -0.618 5.618 20 C -0.330 4.330 21 H 0.037 0.963 22 C -0.066 4.066 23 N -0.954 5.954 24 Si 1.100 2.900 25 H -0.269 1.269 26 H -0.276 1.276 27 H -0.304 1.304 28 C 0.123 3.877 29 C -0.125 4.125 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.058 0.942 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.072 0.928 37 H 0.038 0.962 38 H 0.094 0.906 39 H 0.107 0.893 40 H 0.079 0.921 41 H 0.067 0.933 42 H 0.098 0.902 43 H 0.067 0.933 44 H 0.071 0.929 45 H 0.064 0.936 46 H 0.070 0.930 47 H 0.054 0.946 48 H 0.024 0.976 49 H 0.250 0.750 50 H 0.029 0.971 51 H 0.059 0.941 52 H 0.067 0.933 53 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.214 -6.148 -26.750 30.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.149 4.149 3 C -0.166 4.166 4 C 0.086 3.914 5 H 0.112 0.888 6 O -0.303 6.303 7 C -0.018 4.018 8 C -0.195 4.195 9 C -0.144 4.144 10 C -0.151 4.151 11 H 0.143 0.857 12 C 0.305 3.695 13 O -0.431 6.431 14 N -0.345 5.345 15 C -0.072 4.072 16 C 0.054 3.946 17 C -0.160 4.160 18 C 0.018 3.982 19 N -0.343 5.343 20 C -0.460 4.460 21 H 0.055 0.945 22 C -0.261 4.261 23 N -0.597 5.597 24 Si 0.927 3.073 25 H -0.195 1.195 26 H -0.202 1.202 27 H -0.232 1.232 28 C -0.002 4.002 29 C -0.165 4.165 30 H 0.104 0.896 31 H 0.111 0.889 32 H 0.100 0.900 33 H 0.077 0.923 34 H 0.096 0.904 35 H 0.106 0.894 36 H 0.090 0.910 37 H 0.057 0.943 38 H 0.113 0.887 39 H 0.125 0.875 40 H 0.098 0.902 41 H 0.086 0.914 42 H 0.116 0.884 43 H 0.086 0.914 44 H 0.089 0.911 45 H 0.083 0.917 46 H 0.088 0.912 47 H 0.073 0.927 48 H 0.042 0.958 49 H 0.059 0.941 50 H 0.047 0.953 51 H 0.077 0.923 52 H 0.086 0.914 53 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 10.323 -5.059 -26.844 29.202 hybrid contribution 0.938 -1.421 1.068 2.010 sum 11.261 -6.480 -25.776 28.865 Atomic orbital electron populations 1.23577 0.96389 1.00938 0.99204 1.21729 0.95581 0.95003 1.02625 1.20787 1.00175 0.92600 1.03034 1.20731 0.90734 0.85576 0.94326 0.88806 1.88023 1.34755 1.14910 1.92625 1.22665 0.98052 0.84745 0.96352 1.22180 0.98736 1.00324 0.98269 1.21604 0.97598 0.90734 1.04494 1.22105 0.97372 1.02184 0.93458 0.85695 1.20917 0.89735 0.75616 0.83269 1.90716 1.20803 1.49169 1.82454 1.48079 1.09367 1.69627 1.07416 1.22028 0.80086 1.01919 1.03216 1.20647 0.92525 0.94767 0.86658 1.22121 0.99658 0.98574 0.95673 1.21021 0.96121 0.85765 0.95259 1.44480 1.84820 1.02498 1.02543 1.20126 1.25875 1.14585 0.85423 0.94521 1.27212 1.03233 0.97479 0.98195 1.71012 1.30559 1.38371 1.19729 0.83306 0.74033 0.76005 0.73992 1.19537 1.20203 1.23220 1.21449 0.96201 0.91956 0.90603 1.22247 1.00087 0.96757 0.97412 0.89586 0.88874 0.89969 0.92316 0.90368 0.89383 0.90950 0.94334 0.88724 0.87474 0.90188 0.91441 0.88411 0.91426 0.91117 0.91740 0.91158 0.92712 0.95787 0.94080 0.95344 0.92302 0.91430 0.91310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.32 12.32 67.78 0.84 -3.49 16 2 C -0.15 -3.18 4.51 -16.49 -0.07 -3.25 16 3 C -0.11 -1.63 9.98 71.24 0.71 -0.92 16 4 C 0.14 2.72 2.57 29.88 0.08 2.79 16 5 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 6 O -0.38 -9.24 7.49 -129.62 -0.97 -10.21 16 7 C 0.06 1.00 6.84 72.01 0.49 1.49 16 8 C -0.16 -2.58 5.85 30.68 0.18 -2.40 16 9 C -0.11 -1.33 5.46 30.71 0.17 -1.17 16 10 C -0.13 -2.18 1.77 -11.45 -0.02 -2.20 16 11 H 0.13 1.42 5.43 -2.39 -0.01 1.41 16 12 C 0.52 13.40 5.25 87.66 0.46 13.86 16 13 O -0.55 -19.31 12.31 16.30 0.20 -19.11 16 14 N -0.61 -15.46 2.76 -822.44 -2.27 -17.73 16 15 C 0.07 1.21 8.79 127.77 1.12 2.34 16 16 C 0.16 5.13 2.48 45.02 0.11 5.24 16 17 C -0.12 -3.95 5.34 30.67 0.16 -3.79 16 18 C 0.14 5.88 6.51 86.36 0.56 6.45 16 19 N -0.62 -29.97 2.76 -698.25 -1.92 -31.90 16 20 C -0.33 -19.00 9.88 84.04 0.83 -18.17 16 21 H 0.04 2.29 8.06 -2.91 -0.02 2.26 16 22 C -0.07 -3.91 5.19 84.86 0.44 -3.47 16 23 N -0.95 -60.84 13.70 21.65 0.30 -60.54 16 24 Si 1.10 54.60 24.78 68.60 1.70 56.30 16 25 H -0.27 -12.19 6.49 99.48 0.65 -11.54 16 26 H -0.28 -13.18 6.94 99.48 0.69 -12.49 16 27 H -0.30 -15.26 7.11 99.48 0.71 -14.55 16 28 C 0.12 5.40 4.25 86.51 0.37 5.77 16 29 C -0.13 -4.38 5.33 30.81 0.16 -4.21 16 30 H 0.09 2.74 6.68 -2.91 -0.02 2.72 16 31 H 0.09 2.25 8.05 -2.91 -0.02 2.22 16 32 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.06 0.98 8.10 -2.39 -0.02 0.96 16 34 H 0.08 0.86 7.26 -2.39 -0.02 0.84 16 35 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.04 0.93 7.14 -2.39 -0.02 0.91 16 38 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.08 0.94 7.26 -2.39 -0.02 0.93 16 41 H 0.07 1.01 7.81 -2.39 -0.02 0.99 16 42 H 0.10 1.08 5.90 -2.39 -0.01 1.07 16 43 H 0.07 1.33 6.46 -2.39 -0.02 1.32 16 44 H 0.07 2.69 6.90 -2.39 -0.02 2.68 16 45 H 0.06 2.10 7.72 -2.39 -0.02 2.08 16 46 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 47 H 0.05 2.26 7.93 -2.39 -0.02 2.24 16 48 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 49 H 0.25 15.97 8.73 -92.71 -0.81 15.16 16 50 H 0.03 1.24 7.28 -2.39 -0.02 1.23 16 51 H 0.06 2.78 4.53 -2.39 -0.01 2.77 16 52 H 0.07 2.34 6.73 -2.38 -0.02 2.32 16 53 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -75.68 387.90 4.39 -71.30 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: 0.76 Total: 17.03 kcal Atomic # 6 Polarization: -11.73 SS G_CDS: 6.59 Total: -5.13 kcal Atomic # 7 Polarization: -106.27 SS G_CDS: -3.90 Total: -110.17 kcal Atomic # 8 Polarization: -28.55 SS G_CDS: -0.77 Total: -29.32 kcal Atomic # 14 Polarization: 54.60 SS G_CDS: 1.70 Total: 56.30 kcal Total: -75.68 4.39 -71.30 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006103528.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.532 kcal (2) G-P(sol) polarization free energy of solvation -75.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds