Wall clock time and date at job start Tue Mar 31 2020 19:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50698 * 120.00385 * 2 1 4 4 C 1.50697 * 119.99805 * 180.02562 * 2 1 3 5 5 H 1.09001 * 109.48155 * 125.83708 * 4 2 1 6 6 O 1.42904 * 109.47962 * 5.80744 * 4 2 1 7 7 C 1.42911 * 114.09938 * 178.86018 * 6 4 2 8 8 C 1.53088 * 109.41278 * 61.15310 * 7 6 4 9 9 C 1.53171 * 109.16739 * 302.39624 * 8 7 6 10 10 C 1.53086 * 109.48133 * 245.86675 * 4 2 1 11 11 H 1.09000 * 109.51987 * 297.55612 * 10 4 2 12 12 C 1.50699 * 109.52447 * 57.68526 * 10 4 2 13 13 O 1.21273 * 120.00073 * 28.20193 * 12 10 4 14 14 N 1.34781 * 119.99792 * 208.20803 * 12 10 4 15 15 C 1.46500 * 119.99732 * 180.02562 * 14 12 10 16 16 C 1.52998 * 109.46994 * 179.97438 * 15 14 12 17 17 H 1.09001 * 109.58277 * 299.83370 * 16 15 14 18 18 C 1.53194 * 109.70606 * 179.47971 * 16 15 14 19 19 C 1.53036 * 109.31376 * 185.50623 * 18 16 15 20 20 C 1.53346 * 109.60806 * 61.37561 * 19 18 16 21 21 C 1.53198 * 109.14469 * 298.70905 * 20 19 18 22 22 N 1.46921 * 108.89532 * 54.58128 * 21 20 19 23 23 C 1.36937 * 120.63329 * 126.33744 * 22 21 20 24 24 H 1.07997 * 120.00340 * 206.26176 * 23 22 21 25 25 C 1.38818 * 119.99738 * 26.25934 * 23 22 21 26 26 N 1.31617 * 120.00140 * 21.34254 * 25 23 22 27 27 Si 1.86800 * 119.99789 * 201.35100 * 25 23 22 28 28 H 1.48500 * 109.47154 * 359.97438 * 27 25 23 29 29 H 1.48497 * 109.47342 * 119.99704 * 27 25 23 30 30 H 1.48506 * 109.46937 * 239.99873 * 27 25 23 31 31 H 1.08005 * 119.99786 * 359.97438 * 1 2 3 32 32 H 1.07999 * 120.00245 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.47351 * 184.85833 * 3 2 1 34 34 H 1.09001 * 109.47308 * 304.86695 * 3 2 1 35 35 H 1.09005 * 109.46785 * 64.86126 * 3 2 1 36 36 H 1.08997 * 109.48169 * 181.13917 * 7 6 4 37 37 H 1.09003 * 109.47871 * 301.17737 * 7 6 4 38 38 H 1.09006 * 109.51781 * 62.30377 * 8 7 6 39 39 H 1.09007 * 109.52215 * 182.42174 * 8 7 6 40 40 H 1.08999 * 109.54206 * 297.11099 * 9 8 7 41 41 H 1.09003 * 109.54379 * 176.84839 * 9 8 7 42 42 H 0.97002 * 120.00175 * 359.97438 * 14 12 10 43 43 H 1.08998 * 109.47350 * 59.99559 * 15 14 12 44 44 H 1.09003 * 109.46804 * 299.99398 * 15 14 12 45 45 H 1.09001 * 109.49300 * 305.46201 * 18 16 15 46 46 H 1.09004 * 109.49318 * 65.55370 * 18 16 15 47 47 H 1.09007 * 109.45647 * 181.38562 * 19 18 16 48 48 H 1.09007 * 109.46132 * 301.35434 * 19 18 16 49 49 H 1.09006 * 109.68270 * 178.75240 * 20 19 18 50 50 H 1.08993 * 109.47914 * 58.54906 * 20 19 18 51 51 H 1.09002 * 109.58974 * 294.71716 * 21 20 19 52 52 H 1.09009 * 109.58122 * 174.43951 * 21 20 19 53 53 H 0.96993 * 120.00022 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.0635 -1.3051 -0.0006 5 1 2.7663 -1.3188 -0.8337 6 8 1.1410 -2.3879 -0.1374 7 6 1.7561 -3.6773 -0.1754 8 6 2.5101 -3.9202 1.1345 9 6 3.5441 -2.8078 1.3333 10 6 2.8298 -1.4528 1.3164 11 1 3.5640 -0.6518 1.4024 12 6 1.8650 -1.3778 2.4716 13 8 0.7135 -1.7286 2.3238 14 7 2.2817 -0.9206 3.6691 15 6 1.3439 -0.8482 4.7923 16 6 2.0658 -0.2998 6.0248 17 1 2.8923 -0.9600 6.2880 18 6 1.0865 -0.2096 7.1994 19 6 1.7791 0.4662 8.3850 20 6 2.1968 1.8890 7.9942 21 6 3.1874 1.8193 6.8276 22 7 2.5824 1.0448 5.7354 23 6 2.5020 1.5661 4.4717 24 1 1.7280 1.2305 3.7974 25 6 3.4152 2.5260 4.0575 26 7 4.5747 2.6390 4.6700 27 14 2.9985 3.6575 2.6308 28 1 1.6444 3.3286 2.1174 29 1 3.0236 5.0681 3.0940 30 1 3.9964 3.4747 1.5463 31 1 -0.5400 0.9354 0.0004 32 1 -0.5400 -0.9353 0.0004 33 1 3.1320 1.1077 -0.0870 34 1 1.7366 1.9135 -0.8432 35 1 1.8672 1.8380 0.9304 36 1 0.9897 -4.4421 -0.3010 37 1 2.4549 -3.7221 -1.0108 38 1 1.8057 -3.9157 1.9664 39 1 3.0155 -4.8850 1.0904 40 1 4.2775 -2.8434 0.5278 41 1 4.0460 -2.9434 2.2914 42 1 3.2028 -0.6403 3.7874 43 1 0.9600 -1.8448 5.0099 44 1 0.5160 -0.1886 4.5323 45 1 0.2166 0.3768 6.9035 46 1 0.7694 -1.2122 7.4865 47 1 1.0921 0.5095 9.2303 48 1 2.6630 -0.1073 8.6644 49 1 2.6705 2.3793 8.8448 50 1 1.3167 2.4558 7.6907 51 1 4.1053 1.3320 7.1563 52 1 3.4133 2.8272 6.4794 53 1 5.2129 3.3094 4.3803 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024694581.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:38 Heat of formation + Delta-G solvation = -62.190857 kcal Electronic energy + Delta-G solvation = -32526.453702 eV Core-core repulsion = 28591.250697 eV Total energy + Delta-G solvation = -3935.203005 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.61183 -39.86850 -38.72913 -36.21984 -35.52196 -34.86917 -34.66898 -32.33291 -31.70251 -31.26230 -28.25336 -27.73927 -26.61170 -26.05352 -24.72549 -23.81533 -22.64749 -22.02745 -20.85281 -20.37675 -19.61865 -18.39748 -17.66548 -17.42689 -17.35024 -16.65630 -16.42110 -16.20370 -15.88499 -15.69921 -15.53782 -14.88926 -14.79998 -14.65256 -14.56956 -14.40847 -14.32100 -13.96318 -13.82100 -13.69576 -13.65657 -13.21629 -13.15602 -12.83366 -12.75526 -12.63687 -12.48632 -12.30459 -12.20049 -12.11645 -11.91414 -11.80411 -11.55910 -11.53227 -11.34150 -11.12215 -11.04363 -10.53944 -10.46941 -10.32472 -9.81505 -9.63423 -8.61129 -7.82116 -5.19890 1.32207 1.39471 1.47603 1.53295 1.95503 2.47579 2.53226 2.87760 3.32297 3.58593 3.66836 3.78554 3.86511 4.01363 4.05646 4.10702 4.15231 4.20110 4.24647 4.27236 4.43013 4.47789 4.49192 4.55094 4.56927 4.64901 4.66844 4.72270 4.77735 4.81555 4.87042 4.87929 4.97504 4.98849 5.02462 5.06740 5.13598 5.19889 5.23980 5.27118 5.32723 5.38613 5.45079 5.63051 5.71325 5.74332 5.81925 5.83777 5.91217 6.43536 6.47888 6.88549 7.20901 7.57691 7.91730 8.43353 9.23415 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.011964 B = 0.005055 C = 0.004068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2339.853379 B = 5537.880922 C = 6881.052061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.144 4.144 3 C -0.124 4.124 4 C 0.153 3.847 5 H 0.090 0.910 6 O -0.377 6.377 7 C 0.059 3.941 8 C -0.153 4.153 9 C -0.105 4.105 10 C -0.136 4.136 11 H 0.095 0.905 12 C 0.517 3.483 13 O -0.562 6.562 14 N -0.704 5.704 15 C 0.145 3.855 16 C 0.161 3.839 17 H 0.031 0.969 18 C -0.122 4.122 19 C -0.102 4.102 20 C -0.135 4.135 21 C 0.176 3.824 22 N -0.599 5.599 23 C -0.228 4.228 24 H 0.066 0.934 25 C -0.034 4.034 26 N -0.923 5.923 27 Si 0.921 3.079 28 H -0.269 1.269 29 H -0.307 1.307 30 H -0.281 1.281 31 H 0.091 0.909 32 H 0.100 0.900 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.047 0.953 36 H 0.098 0.902 37 H 0.069 0.931 38 H 0.046 0.954 39 H 0.098 0.902 40 H 0.100 0.900 41 H 0.072 0.928 42 H 0.407 0.593 43 H 0.065 0.935 44 H 0.037 0.963 45 H 0.051 0.949 46 H 0.080 0.920 47 H 0.073 0.927 48 H 0.058 0.942 49 H 0.065 0.935 50 H 0.044 0.956 51 H 0.001 0.999 52 H 0.050 0.950 53 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.270 -10.821 -4.612 11.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.144 4.144 3 C -0.180 4.180 4 C 0.095 3.905 5 H 0.108 0.892 6 O -0.296 6.296 7 C -0.018 4.018 8 C -0.190 4.190 9 C -0.143 4.143 10 C -0.158 4.158 11 H 0.113 0.887 12 C 0.304 3.696 13 O -0.441 6.441 14 N -0.354 5.354 15 C 0.021 3.979 16 C 0.055 3.945 17 H 0.049 0.951 18 C -0.162 4.162 19 C -0.139 4.139 20 C -0.174 4.174 21 C 0.050 3.950 22 N -0.324 5.324 23 C -0.359 4.359 24 H 0.084 0.916 25 C -0.230 4.230 26 N -0.570 5.570 27 Si 0.753 3.247 28 H -0.194 1.194 29 H -0.235 1.235 30 H -0.208 1.208 31 H 0.109 0.891 32 H 0.118 0.882 33 H 0.090 0.910 34 H 0.100 0.900 35 H 0.066 0.934 36 H 0.116 0.884 37 H 0.087 0.913 38 H 0.065 0.935 39 H 0.117 0.883 40 H 0.118 0.882 41 H 0.091 0.909 42 H 0.243 0.757 43 H 0.083 0.917 44 H 0.055 0.945 45 H 0.070 0.930 46 H 0.099 0.901 47 H 0.092 0.908 48 H 0.076 0.924 49 H 0.084 0.916 50 H 0.063 0.937 51 H 0.020 0.980 52 H 0.068 0.932 53 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -2.175 -10.958 -4.764 12.145 hybrid contribution 0.625 1.431 -0.345 1.600 sum -1.550 -9.527 -5.109 10.921 Atomic orbital electron populations 1.23551 0.95809 1.01288 0.99083 1.21563 0.95832 0.94285 1.02695 1.20968 1.00567 0.94422 1.02058 1.20581 0.90021 0.85503 0.94440 0.89247 1.87982 1.33449 1.14365 1.93785 1.22705 0.97996 0.84670 0.96400 1.22166 0.98273 0.99655 0.98941 1.21565 0.97655 0.90971 1.04125 1.21996 0.97938 1.01664 0.94213 0.88652 1.20528 0.88718 0.76591 0.83787 1.90642 1.19888 1.49916 1.83631 1.46113 1.14893 1.64120 1.10294 1.21096 0.91912 0.98884 0.86010 1.20858 0.94359 0.86506 0.92818 0.95105 1.21890 0.97958 1.00877 0.95436 1.21391 1.00057 0.95306 0.97172 1.22098 0.99505 0.97428 0.98390 1.20597 0.91871 0.95947 0.86578 1.44311 1.69975 1.12453 1.05639 1.19311 1.07586 1.18110 0.90872 0.91607 1.25277 0.94944 1.02961 0.99837 1.70176 1.06227 1.35884 1.44701 0.86006 0.78284 0.79421 0.81030 1.19388 1.23539 1.20802 0.89066 0.88155 0.91048 0.90013 0.93385 0.88366 0.91270 0.93485 0.88323 0.88167 0.90897 0.75736 0.91668 0.94460 0.93031 0.90137 0.90795 0.92352 0.91639 0.93716 0.98044 0.93198 0.94455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.56 12.79 67.78 0.87 -4.69 16 2 C -0.14 -4.76 4.49 -16.49 -0.07 -4.84 16 3 C -0.12 -4.01 9.76 71.24 0.70 -3.32 16 4 C 0.15 4.49 2.52 29.88 0.08 4.56 16 5 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 6 O -0.38 -11.52 7.39 -129.44 -0.96 -12.47 16 7 C 0.06 1.31 6.84 72.01 0.49 1.80 16 8 C -0.15 -3.42 5.78 30.68 0.18 -3.24 16 9 C -0.11 -2.42 5.52 30.71 0.17 -2.25 16 10 C -0.14 -4.09 2.47 -11.45 -0.03 -4.12 16 11 H 0.10 2.93 7.81 -2.39 -0.02 2.91 16 12 C 0.52 19.07 5.46 87.66 0.48 19.55 16 13 O -0.56 -23.59 13.30 16.53 0.22 -23.37 16 14 N -0.70 -26.76 3.75 -463.06 -1.74 -28.50 16 15 C 0.15 5.50 4.43 86.38 0.38 5.89 16 16 C 0.16 6.05 3.00 44.98 0.14 6.18 16 17 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 18 C -0.12 -3.85 5.38 30.67 0.17 -3.69 16 19 C -0.10 -3.04 5.89 30.72 0.18 -2.86 16 20 C -0.14 -4.82 6.11 30.78 0.19 -4.63 16 21 C 0.18 7.92 5.34 86.37 0.46 8.38 16 22 N -0.60 -27.18 2.99 -675.22 -2.02 -29.20 16 23 C -0.23 -11.38 7.13 84.03 0.60 -10.78 16 24 H 0.07 3.42 5.65 -2.91 -0.02 3.40 16 25 C -0.03 -1.78 4.81 84.86 0.41 -1.37 16 26 N -0.92 -50.62 11.35 21.65 0.25 -50.38 16 27 Si 0.92 43.03 27.70 68.60 1.90 44.93 16 28 H -0.27 -12.32 6.11 99.48 0.61 -11.71 16 29 H -0.31 -14.94 7.11 99.48 0.71 -14.23 16 30 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 31 H 0.09 3.00 8.05 -2.91 -0.02 2.97 16 32 H 0.10 3.69 6.86 -2.91 -0.02 3.67 16 33 H 0.07 2.11 7.81 -2.39 -0.02 2.09 16 34 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.05 1.85 4.74 -2.38 -0.01 1.84 16 36 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.05 1.36 6.91 -2.38 -0.02 1.34 16 39 H 0.10 1.62 8.14 -2.38 -0.02 1.60 16 40 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.41 16.30 7.39 -92.71 -0.68 15.61 16 43 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 44 H 0.04 1.60 7.45 -2.39 -0.02 1.59 16 45 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16 47 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 48 H 0.06 1.70 8.14 -2.38 -0.02 1.69 16 49 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 50 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 51 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 52 H 0.05 2.59 6.05 -2.38 -0.01 2.58 16 53 H 0.25 13.33 8.31 -92.71 -0.77 12.56 16 Total: -1.00 -61.89 391.83 3.13 -58.77 By element: Atomic # 1 Polarization: 39.56 SS G_CDS: 0.10 Total: 39.66 kcal Atomic # 6 Polarization: -4.81 SS G_CDS: 5.37 Total: 0.57 kcal Atomic # 7 Polarization: -104.56 SS G_CDS: -3.51 Total: -108.07 kcal Atomic # 8 Polarization: -35.11 SS G_CDS: -0.74 Total: -35.85 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 1.90 Total: 44.93 kcal Total: -61.89 3.13 -58.77 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024694581.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.424 kcal (2) G-P(sol) polarization free energy of solvation -61.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds