Wall clock time and date at job start Tue Mar 31 2020 19:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47204 * 2 1 4 4 C 1.52997 * 109.47204 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.48064 * 305.02369 * 4 3 2 6 6 C 1.53089 * 109.48094 * 184.99521 * 4 3 2 7 7 C 1.53181 * 109.16186 * 182.39461 * 6 4 3 8 8 H 1.09004 * 109.54205 * 176.94132 * 7 6 4 9 9 C 1.50702 * 109.54490 * 297.11718 * 7 6 4 10 10 O 1.21278 * 119.99497 * 113.96739 * 9 7 6 11 11 N 1.34774 * 119.99931 * 293.96441 * 9 7 6 12 12 C 1.47161 * 120.70639 * 174.75327 * 11 9 7 13 13 C 1.53889 * 108.03021 * 132.76035 * 12 11 9 14 14 H 1.09002 * 112.09569 * 182.54580 * 13 12 11 15 15 C 1.54540 * 107.82682 * 306.50042 * 13 12 11 16 16 C 1.54285 * 104.84896 * 89.07704 * 15 13 12 17 17 C 1.54542 * 104.84895 * 359.97438 * 16 15 13 18 18 H 1.08994 * 112.18679 * 146.40909 * 17 16 15 19 19 C 1.47156 * 120.71241 * 354.47137 * 11 9 7 20 20 N 1.48309 * 104.35831 * 24.70326 * 17 16 15 21 21 C 1.36940 * 128.08172 * 139.07830 * 20 17 16 22 22 H 1.07997 * 120.00368 * 193.82569 * 21 20 17 23 23 C 1.38814 * 119.99236 * 13.82707 * 21 20 17 24 24 N 1.31615 * 120.00341 * 9.60153 * 23 21 20 25 25 Si 1.86806 * 119.99548 * 189.59594 * 23 21 20 26 26 H 1.48499 * 109.46809 * 60.00549 * 25 23 21 27 27 H 1.48507 * 109.46967 * 180.02562 * 25 23 21 28 28 H 1.48493 * 109.47048 * 300.00294 * 25 23 21 29 29 C 1.53177 * 109.10902 * 57.03223 * 7 6 4 30 30 C 1.53285 * 109.06188 * 303.05805 * 29 7 6 31 31 O 1.42899 * 109.46379 * 57.55292 * 30 29 7 32 32 H 1.09004 * 109.47157 * 60.00042 * 1 2 3 33 33 H 1.08999 * 109.47538 * 179.97438 * 1 2 3 34 34 H 1.09006 * 109.47492 * 300.00223 * 1 2 3 35 35 H 1.09003 * 109.46887 * 240.00200 * 2 1 3 36 36 H 1.08996 * 109.47185 * 119.99651 * 2 1 3 37 37 H 1.08994 * 109.47427 * 59.99803 * 3 2 1 38 38 H 1.09004 * 109.47030 * 300.00037 * 3 2 1 39 39 H 1.09004 * 109.51925 * 62.49244 * 6 4 3 40 40 H 1.08993 * 109.52669 * 302.30438 * 6 4 3 41 41 H 1.09007 * 109.74681 * 252.39192 * 12 11 9 42 42 H 1.08997 * 109.75273 * 13.07383 * 12 11 9 43 43 H 1.09003 * 110.36285 * 207.91451 * 15 13 12 44 44 H 1.08996 * 110.37013 * 330.12275 * 15 13 12 45 45 H 1.09000 * 110.36350 * 118.83913 * 16 15 13 46 46 H 1.09002 * 110.36315 * 241.04319 * 16 15 13 47 47 H 1.09005 * 109.75039 * 346.87306 * 19 11 9 48 48 H 1.08998 * 109.75121 * 107.60618 * 19 11 9 49 49 H 0.97004 * 120.00265 * 179.97438 * 24 23 21 50 50 H 1.08996 * 109.52326 * 62.87699 * 29 7 6 51 51 H 1.08996 * 109.52352 * 183.06535 * 29 7 6 52 52 H 1.09002 * 109.45674 * 297.55579 * 30 29 7 53 53 H 1.09000 * 109.46550 * 177.55887 * 30 29 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9331 0.8528 0.8424 6 6 4.0804 2.8803 0.1263 7 6 5.6111 2.8775 0.0660 8 1 5.9792 3.9029 0.1004 9 6 6.1604 2.1052 1.2378 10 8 6.7565 1.0654 1.0527 11 7 5.9891 2.5700 2.4911 12 6 6.4168 1.7743 3.6528 13 6 7.2056 2.6974 4.5982 14 1 7.5938 2.1619 5.4646 15 6 8.3287 3.3687 3.7758 16 6 7.6907 4.6552 3.2116 17 6 6.2398 4.6441 3.7438 18 1 5.8674 5.6485 3.9447 19 6 5.3760 3.8868 2.7271 20 7 6.3048 3.8146 4.9716 21 6 5.6794 4.0302 6.1706 22 1 5.9843 3.4762 7.0460 23 6 4.6534 4.9609 6.2606 24 7 4.1536 5.4973 5.1675 25 14 3.9821 5.4521 7.9333 26 1 5.0730 6.0405 8.7511 27 1 2.8994 6.4532 7.7576 28 1 3.4399 4.2526 8.6206 29 6 6.0602 2.2153 -1.2401 30 6 5.4714 0.8019 -1.3131 31 8 4.0473 0.8740 -1.2206 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 -0.3634 0.5139 0.8900 35 1 1.8933 -0.5138 -0.8900 36 1 1.8933 -0.5138 0.8900 37 1 1.6767 1.9564 0.8899 38 1 1.6766 1.9563 -0.8900 39 1 3.7542 3.3008 1.0776 40 1 3.6847 3.4803 -0.6931 41 1 5.5428 1.3778 4.1696 42 1 7.0533 0.9533 3.3227 43 1 9.1740 3.6149 4.4185 44 1 8.6478 2.7144 2.9646 45 1 8.2223 5.5339 3.5769 46 1 7.6966 4.6350 2.1218 47 1 5.3335 4.4462 1.7925 48 1 4.3700 3.7585 3.1264 49 1 3.4364 6.1474 5.2304 50 1 5.7044 2.8019 -2.0871 51 1 7.1485 2.1606 -1.2653 52 1 5.8595 0.2039 -0.4885 53 1 5.7513 0.3403 -2.2601 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029528359.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:22 Heat of formation + Delta-G solvation = -74.709518 kcal Electronic energy + Delta-G solvation = -32345.829867 eV Core-core repulsion = 28410.084012 eV Total energy + Delta-G solvation = -3935.745855 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.09327 -40.48314 -38.86768 -35.93827 -35.51858 -34.80038 -34.02960 -32.20619 -32.07689 -31.04881 -28.57488 -27.68333 -26.07116 -25.43942 -25.19380 -23.67072 -22.54864 -21.97340 -21.30904 -20.73716 -19.98431 -18.40675 -17.73145 -17.48242 -17.21978 -16.81143 -16.70684 -16.25319 -15.80878 -15.64518 -15.43041 -15.19712 -14.79625 -14.73158 -14.62961 -14.42404 -13.84860 -13.81013 -13.60552 -13.52695 -13.29734 -13.13550 -13.08375 -12.87929 -12.84282 -12.67919 -12.57705 -12.44370 -12.25633 -12.01267 -11.89508 -11.84832 -11.60648 -11.55323 -11.47727 -11.42280 -11.28780 -11.12681 -10.81703 -10.57607 -10.13706 -9.67445 -8.70363 -7.84547 -5.18388 1.50419 1.51581 1.57079 1.66670 2.12933 2.51825 2.85062 3.34518 3.45372 3.50404 3.57691 3.80357 3.85786 4.05301 4.09411 4.10396 4.13694 4.20670 4.26297 4.27943 4.32886 4.34248 4.43522 4.54569 4.61877 4.67853 4.71815 4.75101 4.79122 4.79706 4.82417 4.87795 4.92350 4.97142 5.00605 5.03757 5.05771 5.08785 5.10956 5.15112 5.20787 5.26794 5.34316 5.35287 5.36328 5.45304 5.54820 5.62390 5.84785 6.24370 6.31085 6.61428 7.09402 7.24581 7.73009 8.51960 9.26620 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.011622 B = 0.004270 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.563191 B = 6555.893008 C = 8096.996576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.120 4.120 3 C -0.107 4.107 4 C 0.095 3.905 5 H 0.023 0.977 6 C -0.139 4.139 7 C -0.109 4.109 8 H 0.114 0.886 9 C 0.512 3.488 10 O -0.581 6.581 11 N -0.589 5.589 12 C 0.108 3.892 13 C 0.130 3.870 14 H 0.080 0.920 15 C -0.112 4.112 16 C -0.127 4.127 17 C 0.161 3.839 18 H 0.092 0.908 19 C 0.122 3.878 20 N -0.604 5.604 21 C -0.237 4.237 22 H 0.072 0.928 23 C -0.046 4.046 24 N -0.931 5.931 25 Si 0.966 3.034 26 H -0.284 1.284 27 H -0.294 1.294 28 H -0.285 1.285 29 C -0.124 4.124 30 C 0.047 3.953 31 O -0.386 6.386 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.053 0.947 35 H 0.063 0.937 36 H 0.044 0.956 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.102 0.898 41 H 0.039 0.961 42 H 0.080 0.920 43 H 0.063 0.937 44 H 0.062 0.938 45 H 0.056 0.944 46 H 0.068 0.932 47 H 0.088 0.912 48 H 0.048 0.952 49 H 0.250 0.750 50 H 0.096 0.904 51 H 0.078 0.922 52 H 0.053 0.947 53 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.089 -4.200 -13.279 13.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.158 4.158 3 C -0.144 4.144 4 C 0.037 3.963 5 H 0.042 0.958 6 C -0.177 4.177 7 C -0.130 4.130 8 H 0.132 0.868 9 C 0.302 3.698 10 O -0.463 6.463 11 N -0.320 5.320 12 C -0.017 4.017 13 C 0.022 3.978 14 H 0.098 0.902 15 C -0.151 4.151 16 C -0.166 4.166 17 C 0.054 3.946 18 H 0.110 0.890 19 C -0.002 4.002 20 N -0.325 5.325 21 C -0.366 4.366 22 H 0.090 0.910 23 C -0.241 4.241 24 N -0.578 5.578 25 Si 0.796 3.204 26 H -0.210 1.210 27 H -0.220 1.220 28 H -0.211 1.211 29 C -0.162 4.162 30 C -0.030 4.030 31 O -0.305 6.305 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.063 0.937 37 H 0.093 0.907 38 H 0.101 0.899 39 H 0.093 0.907 40 H 0.121 0.879 41 H 0.057 0.943 42 H 0.098 0.902 43 H 0.082 0.918 44 H 0.081 0.919 45 H 0.075 0.925 46 H 0.086 0.914 47 H 0.106 0.894 48 H 0.066 0.934 49 H 0.059 0.941 50 H 0.114 0.886 51 H 0.096 0.904 52 H 0.071 0.929 53 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -0.109 -4.657 -13.348 14.137 hybrid contribution -0.256 0.313 1.620 1.670 sum -0.364 -4.344 -11.728 12.511 Atomic orbital electron populations 1.21749 0.94540 1.02099 1.02131 1.21437 0.96735 0.96183 1.01434 1.21622 0.91457 0.98132 1.03235 1.22018 0.95473 0.92537 0.86278 0.95849 1.22255 0.92980 0.98023 1.04428 1.21441 0.97104 1.01298 0.93109 0.86804 1.21038 0.78889 0.85530 0.84357 1.90548 1.44376 1.26136 1.85227 1.48172 1.59278 1.19417 1.05162 1.22148 0.98337 0.94284 0.86927 1.22100 0.90899 0.89759 0.95013 0.90218 1.22367 0.97252 0.96840 0.98686 1.22561 0.97246 0.97335 0.99475 1.21794 0.91955 0.96099 0.84798 0.89027 1.22219 0.96656 0.81995 0.99315 1.45316 1.53538 1.23458 1.10229 1.19205 1.11421 1.19806 0.86174 0.90991 1.25366 0.97743 1.01181 0.99778 1.69935 1.28512 1.32679 1.26721 0.85351 0.77388 0.77392 0.80270 1.21042 1.21965 1.21101 1.21967 1.01644 0.96969 0.95636 1.22903 0.80156 0.96911 1.02981 1.87842 1.21848 1.82691 1.38132 0.91860 0.92168 0.92835 0.91868 0.93680 0.90670 0.89878 0.90704 0.87910 0.94292 0.90214 0.91787 0.91920 0.92496 0.91380 0.89393 0.93398 0.94065 0.88552 0.90359 0.92915 0.87634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 9.91 71.98 0.71 -2.06 16 2 C -0.12 -2.76 5.83 30.59 0.18 -2.59 16 3 C -0.11 -2.54 4.92 30.59 0.15 -2.39 16 4 C 0.09 2.62 2.42 30.62 0.07 2.69 16 5 H 0.02 0.80 7.38 -2.38 -0.02 0.78 16 6 C -0.14 -3.51 4.62 30.68 0.14 -3.37 16 7 C -0.11 -2.82 2.19 -11.42 -0.02 -2.84 16 8 H 0.11 2.60 7.05 -2.38 -0.02 2.58 16 9 C 0.51 17.05 5.74 87.66 0.50 17.56 16 10 O -0.58 -21.94 13.13 -3.02 -0.04 -21.98 16 11 N -0.59 -21.12 2.26 -815.94 -1.85 -22.97 16 12 C 0.11 4.14 5.92 86.55 0.51 4.65 16 13 C 0.13 5.07 4.32 45.47 0.20 5.27 16 14 H 0.08 3.01 8.14 -2.39 -0.02 3.00 16 15 C -0.11 -3.83 6.18 31.55 0.20 -3.64 16 16 C -0.13 -4.42 6.18 31.55 0.20 -4.23 16 17 C 0.16 6.74 3.13 45.30 0.14 6.88 16 18 H 0.09 4.44 6.29 -2.39 -0.02 4.42 16 19 C 0.12 4.58 4.18 86.39 0.36 4.94 16 20 N -0.60 -28.01 2.81 -637.65 -1.79 -29.80 16 21 C -0.24 -12.28 10.37 84.03 0.87 -11.41 16 22 H 0.07 3.67 7.85 -2.91 -0.02 3.65 16 23 C -0.05 -2.38 5.42 84.86 0.46 -1.92 16 24 N -0.93 -49.35 10.46 21.65 0.23 -49.12 16 25 Si 0.97 43.02 29.56 68.60 2.03 45.05 16 26 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 27 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 28 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 29 C -0.12 -2.85 5.31 30.75 0.16 -2.69 16 30 C 0.05 1.22 6.56 72.08 0.47 1.69 16 31 O -0.39 -10.69 9.95 -148.98 -1.48 -12.17 16 32 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 33 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 35 H 0.06 1.50 7.83 -2.39 -0.02 1.48 16 36 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 39 H 0.07 2.10 5.94 -2.39 -0.01 2.09 16 40 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 41 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 42 H 0.08 2.96 7.08 -2.39 -0.02 2.94 16 43 H 0.06 2.05 8.14 -2.39 -0.02 2.04 16 44 H 0.06 2.06 7.84 -2.39 -0.02 2.04 16 45 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 46 H 0.07 2.09 7.83 -2.39 -0.02 2.08 16 47 H 0.09 2.78 5.47 -2.38 -0.01 2.77 16 48 H 0.05 2.14 7.69 -2.39 -0.02 2.13 16 49 H 0.25 13.06 8.31 -92.71 -0.77 12.29 16 50 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 51 H 0.08 1.79 8.10 -2.39 -0.02 1.77 16 52 H 0.05 1.70 5.61 -2.39 -0.01 1.68 16 53 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -58.69 388.79 3.27 -55.42 By element: Atomic # 1 Polarization: 28.14 SS G_CDS: 0.87 Total: 29.02 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: 5.31 Total: 6.56 kcal Atomic # 7 Polarization: -98.48 SS G_CDS: -3.41 Total: -101.89 kcal Atomic # 8 Polarization: -32.63 SS G_CDS: -1.52 Total: -34.15 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Total: -58.69 3.27 -55.42 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029528359.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.291 kcal (2) G-P(sol) polarization free energy of solvation -58.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds