Wall clock time and date at job start Tue Mar 31 2020 19:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47347 * 2 1 4 4 C 1.53002 * 109.47215 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.47796 * 305.02453 * 4 3 2 6 6 C 1.53091 * 109.48045 * 185.00191 * 4 3 2 7 7 C 1.53176 * 109.16510 * 182.39574 * 6 4 3 8 8 H 1.08997 * 109.54398 * 297.02833 * 7 6 4 9 9 C 1.50693 * 109.54751 * 176.84748 * 7 6 4 10 10 O 1.21281 * 119.99961 * 272.67651 * 9 7 6 11 11 N 1.34776 * 119.99998 * 92.67466 * 9 7 6 12 12 C 1.47169 * 120.71052 * 184.52991 * 11 9 7 13 13 C 1.53882 * 108.03456 * 132.78106 * 12 11 9 14 14 H 1.08995 * 112.09606 * 181.90997 * 13 12 11 15 15 C 1.54554 * 107.82871 * 306.50071 * 13 12 11 16 16 C 1.54828 * 104.74198 * 88.94056 * 15 13 12 17 17 C 1.54546 * 104.74455 * 0.02562 * 16 15 13 18 18 H 1.09005 * 112.68131 * 146.80493 * 17 16 15 19 19 C 1.47165 * 120.71105 * 4.54972 * 11 9 7 20 20 N 1.48303 * 107.20919 * 58.35600 * 13 12 11 21 21 C 1.36932 * 128.07812 * 106.70535 * 20 13 12 22 22 H 1.08007 * 120.00618 * 164.39460 * 21 20 13 23 23 C 1.38816 * 120.00199 * 344.39526 * 21 20 13 24 24 N 1.31616 * 119.99645 * 350.64049 * 23 21 20 25 25 Si 1.86796 * 120.00112 * 170.63733 * 23 21 20 26 26 H 1.48510 * 109.46763 * 180.02562 * 25 23 21 27 27 H 1.48500 * 109.47581 * 299.99967 * 25 23 21 28 28 H 1.48500 * 109.46919 * 60.00636 * 25 23 21 29 29 C 1.53183 * 109.10655 * 56.93522 * 7 6 4 30 30 C 1.53101 * 109.15657 * 303.15184 * 29 7 6 31 31 O 1.42901 * 109.48932 * 65.05173 * 4 3 2 32 32 H 1.09011 * 109.46981 * 299.99690 * 1 2 3 33 33 H 1.08996 * 109.47363 * 59.99253 * 1 2 3 34 34 H 1.09001 * 109.47496 * 179.97438 * 1 2 3 35 35 H 1.09011 * 109.46981 * 240.00310 * 2 1 3 36 36 H 1.08998 * 109.47582 * 120.00252 * 2 1 3 37 37 H 1.09004 * 109.46937 * 60.00594 * 3 2 1 38 38 H 1.08994 * 109.47520 * 300.00120 * 3 2 1 39 39 H 1.09001 * 109.52037 * 62.49342 * 6 4 3 40 40 H 1.09001 * 109.52211 * 302.30465 * 6 4 3 41 41 H 1.09002 * 109.74658 * 13.14231 * 12 11 9 42 42 H 1.08996 * 109.74594 * 252.41356 * 12 11 9 43 43 H 1.08998 * 110.36424 * 207.91131 * 15 13 12 44 44 H 1.09000 * 110.36186 * 330.22466 * 15 13 12 45 45 H 1.08991 * 110.31228 * 241.24605 * 16 15 13 46 46 H 1.09008 * 110.60718 * 118.91081 * 16 15 13 47 47 H 1.08995 * 109.74521 * 346.85957 * 19 11 9 48 48 H 1.09001 * 109.74873 * 107.53940 * 19 11 9 49 49 H 0.96999 * 120.00473 * 179.97438 * 24 23 21 50 50 H 1.09000 * 109.52124 * 62.96997 * 29 7 6 51 51 H 1.09000 * 109.52163 * 183.16140 * 29 7 6 52 52 H 1.08997 * 109.41193 * 297.49035 * 30 29 7 53 53 H 1.09008 * 109.47972 * 177.50153 * 30 29 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9338 0.8525 0.8406 6 6 4.0806 2.8802 0.1252 7 6 5.6111 2.8775 0.0636 8 1 6.0092 2.3199 0.9114 9 6 6.1201 4.2951 0.1089 10 8 6.2367 4.9306 -0.9175 11 7 6.4457 4.8568 1.2900 12 6 6.8495 6.2700 1.3642 13 6 6.0726 6.9276 2.5183 14 1 6.2981 7.9899 2.6116 15 6 4.5682 6.6554 2.2916 16 6 4.2999 5.3075 3.0046 17 6 5.6677 4.8952 3.5941 18 1 5.5737 4.3542 4.5357 19 6 6.4053 4.0699 2.5330 20 7 6.4005 6.1745 3.7531 21 6 7.1984 6.5666 4.7946 22 1 7.1552 6.0394 5.7363 23 6 8.0627 7.6418 4.6403 24 7 8.2530 8.1673 3.4487 25 14 8.9557 8.3428 6.1237 26 1 9.8121 9.4778 5.6951 27 1 7.9627 8.8209 7.1190 28 1 9.8019 7.2873 6.7363 29 6 6.0592 2.2136 -1.2422 30 6 5.4704 0.8023 -1.3161 31 8 4.0462 0.8744 -1.2224 32 1 -0.3633 0.5138 0.8901 33 1 -0.3634 0.5139 -0.8899 34 1 -0.3634 -1.0276 -0.0005 35 1 1.8933 -0.5138 -0.8901 36 1 1.8933 -0.5138 0.8899 37 1 1.6767 1.9563 0.8901 38 1 1.6767 1.9564 -0.8899 39 1 3.7552 3.3003 1.0769 40 1 3.6842 3.4805 -0.6937 41 1 6.6102 6.7712 0.4263 42 1 7.9204 6.3374 1.5557 43 1 3.9679 7.4490 2.7363 44 1 4.3548 6.5688 1.2262 45 1 3.9553 4.5623 2.2877 46 1 3.5665 5.4341 3.8011 47 1 5.8757 3.1334 2.3588 48 1 7.4207 3.8616 2.8701 49 1 8.8567 8.9188 3.3408 50 1 5.7040 2.8000 -2.0895 51 1 7.1475 2.1574 -1.2675 52 1 5.8591 0.2040 -0.4921 53 1 5.7494 0.3412 -2.2636 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029528361.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:30 Heat of formation + Delta-G solvation = -79.668472 kcal Electronic energy + Delta-G solvation = -31744.076945 eV Core-core repulsion = 27808.116054 eV Total energy + Delta-G solvation = -3935.960891 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.91145 -40.40061 -39.15054 -35.85278 -35.51612 -34.66831 -34.11458 -32.23728 -32.13820 -31.05194 -28.62905 -27.63649 -26.28628 -25.50084 -24.99973 -23.71025 -22.12052 -21.69496 -21.28787 -20.94887 -19.94564 -18.66492 -17.86124 -17.43392 -17.09508 -16.90610 -16.58665 -16.22474 -15.82316 -15.54143 -15.44385 -15.30937 -14.76146 -14.70342 -14.61538 -14.41084 -14.21634 -13.79168 -13.59238 -13.51256 -13.29437 -13.25348 -12.97489 -12.84045 -12.70139 -12.64058 -12.47732 -12.33696 -12.14873 -12.00064 -11.83947 -11.80053 -11.65092 -11.51589 -11.40999 -11.37073 -11.22024 -11.12670 -10.85268 -10.68418 -10.23948 -9.72739 -8.70891 -7.85646 -5.21674 1.48517 1.50219 1.56277 1.64288 2.09813 2.50782 2.89144 3.34032 3.41889 3.50769 3.68113 3.70971 3.90569 4.07042 4.09211 4.12749 4.20606 4.23554 4.25544 4.31331 4.33871 4.36625 4.44270 4.50944 4.59296 4.62760 4.64547 4.76124 4.77371 4.85416 4.86556 4.88320 4.97844 4.99672 5.06009 5.07326 5.08767 5.13623 5.15401 5.21013 5.29085 5.32255 5.36776 5.41522 5.46833 5.53482 5.57581 5.58084 5.83421 6.22530 6.36167 6.62003 7.04996 7.23789 7.73024 8.51765 9.25814 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.018663 B = 0.003134 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.958603 B = 8931.685797 C = 9630.790583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C -0.112 4.112 4 C 0.096 3.904 5 H 0.080 0.920 6 C -0.133 4.133 7 C -0.101 4.101 8 H 0.115 0.885 9 C 0.509 3.491 10 O -0.598 6.598 11 N -0.591 5.591 12 C 0.128 3.872 13 C 0.166 3.834 14 H 0.076 0.924 15 C -0.127 4.127 16 C -0.112 4.112 17 C 0.127 3.873 18 H 0.098 0.902 19 C 0.095 3.905 20 N -0.603 5.603 21 C -0.231 4.231 22 H 0.084 0.916 23 C -0.058 4.058 24 N -0.940 5.940 25 Si 0.971 3.029 26 H -0.302 1.302 27 H -0.280 1.280 28 H -0.278 1.278 29 C -0.137 4.137 30 C 0.069 3.931 31 O -0.391 6.391 32 H 0.058 0.942 33 H 0.049 0.951 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.068 0.932 37 H 0.090 0.910 38 H 0.059 0.941 39 H 0.092 0.908 40 H 0.056 0.944 41 H 0.050 0.950 42 H 0.036 0.964 43 H 0.054 0.946 44 H 0.051 0.949 45 H 0.081 0.919 46 H 0.072 0.928 47 H 0.116 0.884 48 H 0.049 0.951 49 H 0.246 0.754 50 H 0.057 0.943 51 H 0.074 0.926 52 H 0.071 0.929 53 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.336 -18.412 -4.227 22.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.149 4.149 4 C 0.039 3.961 5 H 0.098 0.902 6 C -0.171 4.171 7 C -0.122 4.122 8 H 0.132 0.868 9 C 0.299 3.701 10 O -0.480 6.480 11 N -0.322 5.322 12 C 0.004 3.996 13 C 0.058 3.942 14 H 0.094 0.906 15 C -0.167 4.167 16 C -0.151 4.151 17 C 0.020 3.980 18 H 0.116 0.884 19 C -0.029 4.029 20 N -0.325 5.325 21 C -0.360 4.360 22 H 0.102 0.898 23 C -0.252 4.252 24 N -0.587 5.587 25 Si 0.801 3.199 26 H -0.229 1.229 27 H -0.206 1.206 28 H -0.204 1.204 29 C -0.176 4.176 30 C -0.008 4.008 31 O -0.311 6.311 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.109 0.891 38 H 0.078 0.922 39 H 0.110 0.890 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.055 0.945 43 H 0.073 0.927 44 H 0.069 0.931 45 H 0.099 0.901 46 H 0.091 0.909 47 H 0.133 0.867 48 H 0.067 0.933 49 H 0.055 0.945 50 H 0.076 0.924 51 H 0.092 0.908 52 H 0.090 0.910 53 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -12.202 -17.971 -4.774 22.241 hybrid contribution 1.504 1.530 0.528 2.210 sum -10.698 -16.441 -4.246 20.069 Atomic orbital electron populations 1.21780 0.95490 1.01907 1.01836 1.21437 0.95976 0.95893 1.02258 1.21666 0.91799 0.98319 1.03107 1.22214 0.95299 0.91187 0.87404 0.90224 1.22214 0.91949 0.99336 1.03588 1.21412 0.98037 0.91392 1.01353 0.86763 1.21227 0.76810 0.89862 0.82244 1.90619 1.56871 1.65914 1.34593 1.48259 1.64932 1.11492 1.07502 1.21910 0.98358 0.80920 0.98460 1.21685 0.90788 0.96741 0.84989 0.90617 1.22580 0.96788 0.98385 0.98901 1.22589 0.96860 0.96152 0.99453 1.22142 0.91457 0.87808 0.96582 0.88419 1.22581 1.01066 0.94916 0.84308 1.45340 1.54254 1.13702 1.19207 1.19300 1.13401 1.12444 0.90862 0.89823 1.25574 0.99745 1.01185 0.98714 1.70038 1.40153 1.26666 1.21889 0.85265 0.78054 0.77447 0.79153 1.22872 1.20628 1.20376 1.22061 1.01405 0.97904 0.96187 1.22632 0.80359 0.93999 1.03781 1.87920 1.21534 1.82200 1.39434 0.92267 0.93208 0.92306 0.92374 0.91340 0.89125 0.92238 0.89005 0.92497 0.93161 0.94543 0.92718 0.93051 0.90067 0.90921 0.86667 0.93287 0.94508 0.92413 0.90779 0.91036 0.87358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.91 71.98 0.71 -1.12 16 2 C -0.12 -1.59 5.83 30.59 0.18 -1.41 16 3 C -0.11 -1.67 4.92 30.59 0.15 -1.52 16 4 C 0.10 1.63 2.64 30.63 0.08 1.71 16 5 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 6 C -0.13 -2.79 4.69 30.68 0.14 -2.64 16 7 C -0.10 -2.44 1.91 -11.42 -0.02 -2.46 16 8 H 0.11 2.21 5.99 -2.39 -0.01 2.20 16 9 C 0.51 17.86 6.73 87.65 0.59 18.45 16 10 O -0.60 -26.17 15.66 -3.03 -0.05 -26.22 16 11 N -0.59 -21.81 2.25 -816.08 -1.84 -23.65 16 12 C 0.13 5.90 5.78 86.55 0.50 6.40 16 13 C 0.17 7.65 3.14 45.47 0.14 7.79 16 14 H 0.08 4.13 6.37 -2.39 -0.02 4.11 16 15 C -0.13 -4.73 6.21 31.75 0.20 -4.53 16 16 C -0.11 -3.34 6.21 31.74 0.20 -3.14 16 17 C 0.13 4.33 4.28 45.28 0.19 4.53 16 18 H 0.10 2.97 8.14 -2.38 -0.02 2.95 16 19 C 0.10 2.96 5.65 86.36 0.49 3.45 16 20 N -0.60 -27.79 2.81 -637.76 -1.79 -29.58 16 21 C -0.23 -11.87 10.37 84.04 0.87 -11.00 16 22 H 0.08 4.07 7.85 -2.91 -0.02 4.04 16 23 C -0.06 -3.12 5.42 84.86 0.46 -2.66 16 24 N -0.94 -53.92 10.39 21.65 0.22 -53.70 16 25 Si 0.97 44.00 29.56 68.60 2.03 46.03 16 26 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 27 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 28 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 29 C -0.14 -3.18 5.11 30.69 0.16 -3.03 16 30 C 0.07 1.18 6.84 72.02 0.49 1.67 16 31 O -0.39 -7.86 9.95 -148.98 -1.48 -9.35 16 32 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 33 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.06 0.91 7.83 -2.38 -0.02 0.90 16 36 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.09 1.73 5.73 -2.39 -0.01 1.71 16 40 H 0.06 1.46 8.14 -2.39 -0.02 1.45 16 41 H 0.05 2.42 7.15 -2.39 -0.02 2.40 16 42 H 0.04 1.96 7.78 -2.39 -0.02 1.94 16 43 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 44 H 0.05 1.90 7.84 -2.39 -0.02 1.88 16 45 H 0.08 1.99 5.42 -2.39 -0.01 1.98 16 46 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 47 H 0.12 2.47 5.57 -2.39 -0.01 2.46 16 48 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 49 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 50 H 0.06 1.65 7.75 -2.39 -0.02 1.63 16 51 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 52 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 53 H 0.11 1.56 8.14 -2.38 -0.02 1.55 16 Total: -1.00 -67.47 393.31 3.50 -63.96 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: 0.87 Total: 22.03 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: 5.54 Total: 10.47 kcal Atomic # 7 Polarization: -103.52 SS G_CDS: -3.41 Total: -106.93 kcal Atomic # 8 Polarization: -34.03 SS G_CDS: -1.53 Total: -35.56 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -67.47 3.50 -63.96 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029528361.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.704 kcal (2) G-P(sol) polarization free energy of solvation -67.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds